Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  124  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39217741--39217768
6
4.7
6
100
0
56
0
46
0
53
1.00
39225151--39225189
20
2.0
20
90
10
62
51
15
10
23
1.73
39225554--39225605
24
2.2
24
89
0
77
55
9
1
32
1.43
39237781--39237827
13
3.4
14
77
11
53
65
0
0
34
0.93
39237754--39237823
31
2.3
31
82
5
88
67
1
1
30
1.08
39254561--39254591
16
1.9
16
93
0
53
32
12
0
54
1.38
39259217--39259295
3
26.3
3
97
0
149
68
0
31
0
0.90
39263764--39263806
11
3.8
11
85
14
61
6
9
6
76
1.15
39263764--39263808
13
3.7
13
75
24
53
6
8
6
77
1.11
39268583--39268607
1
25.0
1
100
0
50
0
0
0
100
0.00
39274237--39274293
26
2.2
26
96
0
105
26
8
24
40
1.84
39278026--39278068
11
3.9
11
84
0
59
27
4
0
67
1.10
39278026--39278127
22
4.5
22
71
8
69
25
4
3
65
1.30
39278026--39278123
36
2.9
36
78
13
109
25
5
4
65
1.31
39285152--39285177
9
2.9
9
100
0
52
57
0
7
34
1.27
39295056--39295109
27
2.0
27
96
0
99
55
27
0
16
1.42
39301725--39301749
6
4.2
6
100
0
50
16
0
36
48
1.46
39302789--39302840
26
2.0
26
96
0
95
32
7
17
42
1.77
39305023--39305105
26
3.2
26
78
0
76
42
19
15
22
1.89
39305153--39305304
65
2.3
65
89
0
223
34
23
20
21
1.96
39306735--39306773
19
2.0
20
95
5
71
17
0
5
76
0.96
39306735--39306773
20
2.0
19
90
5
60
17
0
5
76
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39306736--39306800
19
2.9
23
84
13
66
26
0
6
67
1.13
39309575--39309632
29
2.0
29
100
0
116
34
0
20
44
1.52
39309581--39309642
29
2.1
29
88
5
90
38
0
17
43
1.49
39346660--39346735
38
2.0
40
86
5
111
40
14
9
35
1.78
39350177--39350304
35
3.5
35
75
14
116
32
13
22
32
1.92
39350657--39350740
25
3.4
24
73
14
89
44
1
19
35
1.58
39356031--39356068
17
2.2
18
90
4
60
31
10
0
57
1.32
39357990--39358388
46
8.7
47
85
0
447
20
25
13
40
1.89
39358005--39358404
92
4.4
92
90
1
527
21
25
12
41
1.88
39357990--39358384
138
2.9
138
85
0
495
20
25
13
40
1.89
39360187--39360238
25
2.2
23
82
6
59
61
5
0
32
1.20
39365801--39365839
19
2.1
19
95
0
69
43
10
28
17
1.82
39369421--39369470
25
2.0
25
100
0
100
40
16
8
36
1.77
39371953--39371992
21
1.9
21
84
0
53
52
2
0
45
1.14
39373777--39374862
544
2.0
544
97
0
2064
22
26
19
30
1.98
39392148--39392186
16
2.4
16
100
0
78
28
17
20
33
1.96
39393966--39394162
102
2.0
102
89
3
310
34
18
24
22
1.96
39398837--39398870
16
2.1
16
94
0
59
32
2
0
64
1.08
39409493--39409536
20
2.2
20
87
0
61
54
9
2
34
1.44
39409968--39409992
7
3.6
7
100
0
50
48
0
12
40
1.40
39411021--39411045
13
1.9
13
100
0
50
84
0
16
0
0.63
39413985--39414037
11
4.3
12
77
17
56
79
5
9
5
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39422023--39422057
5
6.8
5
87
6
52
0
17
2
80
0.84
39425398--39425423
13
2.0
13
100
0
52
53
15
0
30
1.42
39427303--39427339
19
1.9
19
94
0
65
40
0
8
51
1.32
39427676--39427821
70
2.1
71
80
3
161
36
25
15
21
1.93
39429755--39429822
16
4.2
16
92
0
109
29
0
35
35
1.58
39429803--39429893
45
2.0
44
85
2
119
30
5
28
35
1.80
39430058--39430094
19
2.0
19
94
5
67
48
0
0
51
1.00
39429945--39430261
157
2.0
157
94
1
555
43
3
5
48
1.41
39430195--39430236
15
2.7
16
82
14
52
52
2
0
45
1.13
39430204--39430245
15
2.9
15
82
10
52
52
0
0
47
1.00
39430198--39430490
120
2.4
121
94
2
502
50
4
3
41
1.39
39430324--39430365
15
2.9
15
82
10
52
52
0
0
47
1.00
39443849--39443921
35
2.1
35
94
0
128
38
5
5
50
1.49
39450379--39450446
34
2.0
34
100
0
136
44
11
8
35
1.72
39454120--39454150
16
1.9
16
93
0
53
61
0
0
38
0.96
39454338--39454474
31
4.5
31
63
21
90
32
9
6
51
1.60
39454313--39454498
92
2.0
92
98
0
363
34
11
7
46
1.68
39455996--39456035
19
2.0
20
85
4
55
55
5
0
40
1.22
39458257--39458291
17
2.0
18
94
5
63
45
8
11
34
1.71
39472539--39472646
56
1.9
56
98
0
207
50
14
13
21
1.78
39478363--39478419
26
2.2
26
96
0
105
68
15
8
7
1.37
39479732--39479761
11
2.9
10
90
9
51
13
0
0
86
0.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39485929--39486110
58
3.2
57
79
3
197
40
15
15
28
1.88
39489499--39489527
13
2.3
13
94
5
51
86
0
0
13
0.58
39495467--39495497
6
5.2
6
96
0
53
12
0
3
83
0.75
39503964--39504034
31
2.3
31
85
4
90
42
14
18
25
1.87
39507378--39507425
24
2.0
24
88
8
71
70
2
0
27
0.98
39507416--39507464
20
2.5
20
80
3
55
65
10
0
24
1.23
39507408--39507464
19
3.0
20
76
7
64
66
8
0
24
1.20
39508104--39508177
20
3.8
21
74
15
77
24
1
8
66
1.27
39517126--39517157
6
5.3
6
96
0
55
18
46
0
34
1.49
39530054--39530084
12
2.5
13
94
5
55
32
22
0
45
1.53
39530119--39530150
13
2.5
13
94
0
55
15
12
6
65
1.44
39530431--39530516
21
4.0
23
77
11
83
37
22
22
18
1.94
39530934--39531084
72
2.1
73
82
8
184
37
18
1
43
1.59
39531399--39531432
17
1.9
18
88
5
52
35
23
0
41
1.55
39532207--39532548
171
2.0
171
98
0
666
43
9
2
44
1.49
39532701--39532747
19
2.4
19
76
20
51
36
19
4
40
1.71
39535107--39535260
41
3.8
41
98
0
290
25
28
21
24
1.99
39546288--39546397
42
2.6
42
85
7
145
31
24
13
30
1.94
39546393--39546574
47
3.9
47
97
0
337
31
24
14
29
1.95
39555168--39555424
122
2.1
122
96
1
471
44
13
13
29
1.81
39585155--39585216
23
2.8
22
75
18
65
33
1
1
62
1.14
39585935--39585973
19
2.0
20
90
5
62
17
2
10
69
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39585954--39586002
26
2.0
26
88
8
75
30
0
8
61
1.25
39587686--39587738
24
2.2
24
96
0
97
45
28
7
18
1.77
39592348--39592374
14
1.9
14
100
0
54
40
0
0
59
0.98
39595347--39595371
3
8.3
3
100
0
50
36
0
64
0
0.94
39602243--39602362
43
2.8
42
83
5
152
30
16
25
27
1.97
39604710--39604771
30
2.1
30
93
6
108
38
14
14
32
1.86
39619354--39619382
7
4.1
7
100
0
58
68
0
0
31
0.89
39619735--39619784
26
1.9
26
84
8
66
52
0
2
46
1.12
39619955--39620004
23
2.1
23
81
7
55
42
2
2
54
1.23
39625769--39625851
30
2.6
31
81
11
80
31
4
3
60
1.35
39626386--39626422
18
2.1
18
94
0
65
35
18
18
27
1.95
39627236--39627263
6
4.7
6
100
0
56
85
0
0
14
0.59
39628106--39628386
130
2.2
128
92
2
465
45
11
13
29
1.77
39629204--39629278
37
2.0
38
97
2
143
46
16
2
34
1.61
39639878--39639904
4
6.8
4
100
0
54
22
0
0
77
0.76
39641781--39641927
25
6.0
25
70
21
73
44
1
1
53
1.17
39641807--39641892
21
4.3
20
68
24
65
45
0
0
54
0.99
39641764--39641859
28
3.6
28
73
17
80
40
1
2
56
1.18
39641759--39641884
52
2.5
49
77
16
125
42
0
1
55
1.15
39641853--39641892
21
1.9
22
90
10
66
52
0
0
47
1.00
39641807--39641932
59
2.1
59
80
15
145
46
1
0
51
1.10
39646263--39646324
32
1.9
32
96
0
115
51
4
16
27
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39646960--39647279
46
7.0
46
93
0
507
38
15
23
22
1.92
39648041--39648072
14
2.3
14
94
0
55
62
9
0
28
1.26
39648522--39648578
15
3.6
15
74
19
53
43
0
1
54
1.10
39648606--39648642
16
2.3
16
86
13
58
40
0
0
59
0.97
39648683--39648714
16
1.9
17
93
6
57
43
0
0
56
0.99
39649572--39649700
60
2.2
59
80
4
150
33
8
17
41
1.79
39651187--39651221
9
4.1
9
85
14
56
25
0
0
74
0.82
39651191--39651222
16
2.0
16
100
0
64
25
0
0
75
0.81
39651189--39651242
18
3.1
18
81
2
56
37
0
0
62
0.95
39663426--39663481
25
2.3
24
78
9
69
39
1
8
50
1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279