Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  150  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48674373--48674431
19
2.9
19
82
12
66
8
18
0
72
1.09
48674372--48674430
26
2.2
26
91
8
93
8
18
0
72
1.09
48674379--48674431
7
7.9
7
84
14
67
9
16
0
73
1.08
48674371--48674450
13
5.8
14
71
17
53
7
22
0
70
1.12
48678362--48678410
24
2.0
24
92
0
80
40
4
34
20
1.71
48678373--48678425
24
2.2
24
82
0
61
41
7
37
13
1.72
48679204--48679241
2
19.0
2
100
0
76
0
50
0
50
1.00
48688648--48688810
85
1.9
85
97
0
308
22
14
17
44
1.85
48693665--48693709
22
2.0
22
91
0
72
48
15
2
33
1.57
48705882--48705931
24
2.1
24
100
0
100
28
8
16
48
1.74
48707018--48707069
3
17.3
3
91
0
68
61
30
5
1
1.30
48713444--48713503
29
2.1
29
100
0
120
40
3
23
33
1.71
48722973--48723015
18
2.4
17
81
11
50
13
11
6
67
1.41
48723645--48723688
21
2.0
22
83
12
56
29
6
2
61
1.34
48726536--48727127
202
2.9
200
86
2
808
30
22
15
31
1.95
48729282--48729321
20
2.0
20
90
0
62
27
22
22
27
1.99
48731189--48731434
101
2.4
102
90
1
377
30
23
14
32
1.94
48732088--48732147
31
1.9
31
82
0
75
30
13
16
40
1.87
48739944--48739970
14
1.9
14
100
0
54
51
3
7
37
1.48
48741766--48741799
12
2.8
12
95
0
59
2
44
26
26
1.69
48741813--48741996
66
2.8
65
81
5
210
24
24
27
23
2.00
48746296--48746339
11
4.4
11
75
21
51
61
0
2
36
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48746296--48746355
29
2.0
30
87
9
88
60
0
1
38
1.07
48746294--48746328
18
1.9
18
100
0
70
65
0
0
34
0.93
48746297--48746355
28
2.0
28
87
12
84
59
0
1
38
1.08
48751772--48751820
10
5.0
10
78
16
50
51
4
0
44
1.20
48756116--48756143
14
2.0
14
100
0
56
35
14
0
50
1.43
48761169--48761210
22
2.0
20
86
13
59
38
0
9
52
1.34
48762773--48762808
3
12.0
3
87
0
54
66
0
2
30
1.06
48763496--48763534
21
1.9
20
94
5
69
5
0
48
46
1.24
48764176--48764410
126
1.9
126
98
0
452
34
21
17
27
1.95
48768743--48768786
9
5.1
9
89
10
74
56
11
0
31
1.35
48768752--48768789
16
2.4
16
95
0
67
55
10
0
34
1.34
48768859--48768900
16
2.6
16
92
0
66
42
7
2
47
1.43
48771156--48771184
3
9.7
3
100
0
58
31
0
34
34
1.58
48781766--48781830
33
2.0
33
96
0
121
33
26
9
30
1.88
48783472--48783506
11
3.1
11
84
8
52
28
0
2
68
1.04
48783980--48784033
16
3.4
16
89
0
81
29
0
35
35
1.58
48784247--48784288
15
2.7
16
82
14
52
52
2
0
45
1.13
48784256--48784297
15
2.9
15
82
10
52
52
0
0
47
1.00
48784282--48784468
61
3.1
60
69
14
186
48
6
2
42
1.42
48784250--48784468
120
1.8
120
97
0
420
49
6
1
42
1.39
48784366--48784417
15
3.6
15
80
12
56
53
1
0
44
1.11
48784285--48784469
59
3.1
59
67
20
166
48
7
2
42
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48789629--48789659
15
2.0
16
93
6
55
22
0
6
70
1.09
48799912--48799940
9
3.2
9
100
0
58
31
10
10
48
1.71
48807857--48808017
81
2.0
81
88
2
243
26
24
17
31
1.97
48811083--48811140
29
2.0
29
89
0
89
36
10
24
29
1.88
48819403--48819428
3
8.7
3
100
0
52
30
0
0
69
0.89
48823760--48823794
3
11.7
3
100
0
70
31
0
0
68
0.90
48843424--48843470
20
2.2
22
81
7
62
70
4
8
17
1.29
48843425--48843473
23
2.2
22
81
3
53
73
4
8
14
1.21
48843776--48843815
16
2.6
16
88
4
55
32
0
0
67
0.91
48845991--48846087
33
2.8
35
72
20
89
45
3
1
50
1.24
48846266--48846318
13
4.1
13
77
0
61
35
28
5
30
1.80
48847124--48847157
16
2.1
16
88
0
50
50
14
17
17
1.79
48849958--48849998
21
2.0
21
90
0
64
29
21
29
19
1.98
48851904--48851937
16
2.1
16
88
0
50
50
14
17
17
1.79
48854062--48855082
508
2.0
507
96
0
1880
40
19
12
28
1.87
48855406--48855459
27
2.0
27
85
3
74
29
1
1
66
1.12
48856480--48856525
5
9.6
5
81
9
51
50
6
0
43
1.28
48856479--48856513
18
1.9
18
94
0
61
51
2
0
45
1.16
48871401--48871483
38
2.2
37
82
2
103
24
3
6
66
1.31
48884965--48884995
4
7.8
4
100
0
62
74
0
25
0
0.82
48890659--48890704
24
1.9
24
90
0
74
41
13
10
34
1.79
48892111--48892160
6
7.9
7
89
10
65
16
24
0
60
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48895786--48895884
50
2.0
50
84
4
128
38
11
17
33
1.85
48902149--48902210
21
3.0
21
92
0
106
45
17
22
14
1.85
48920439--48920488
24
2.0
24
84
7
64
44
18
12
26
1.84
48924169--48924197
11
2.6
11
100
0
58
20
37
20
20
1.94
48931740--48931773
12
2.9
12
86
4
52
32
0
0
67
0.91
48934667--48934712
23
2.0
23
83
8
58
41
10
13
34
1.79
48934825--48934878
20
2.7
20
85
5
74
57
7
0
35
1.27
48936663--48936771
55
2.0
55
92
0
182
20
28
17
33
1.95
48938478--48938526
21
2.5
20
77
16
57
30
26
24
18
1.98
48939379--48939403
6
4.2
6
100
0
50
0
16
0
84
0.63
48939447--48939485
20
2.0
20
90
10
62
10
12
5
71
1.28
48939789--48939826
14
2.4
17
87
12
55
52
0
0
47
1.00
48939806--48939844
12
3.4
11
80
13
51
46
2
0
51
1.14
48939830--48939863
17
2.0
17
88
0
50
50
2
0
47
1.16
48946884--48946908
4
6.2
4
100
0
50
24
24
0
52
1.48
48948375--48948414
16
2.4
18
80
19
52
45
0
2
52
1.14
48957076--48957210
41
3.4
40
76
11
134
32
25
15
26
1.95
48957369--48957415
24
2.0
24
84
16
62
51
14
0
34
1.43
48958080--48958118
13
2.6
16
76
23
57
0
30
0
69
0.89
48958083--48958115
13
2.6
13
95
4
59
0
30
0
69
0.88
48958107--48958162
24
2.4
22
80
16
60
8
19
1
69
1.24
48958206--48958244
20
2.0
20
95
5
71
43
5
0
51
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48958209--48958259
21
2.5
20
84
6
59
39
7
1
50
1.42
48959250--48959303
26
2.2
25
83
9
67
31
1
0
66
1.02
48959277--48959327
22
2.3
22
83
10
59
31
1
1
64
1.15
48959239--48959327
45
2.0
46
81
2
108
31
2
2
64
1.18
48967140--48967174
11
3.2
11
88
11
54
0
54
0
45
0.99
48983180--48983214
11
3.2
11
88
11
54
0
54
0
45
0.99
48985971--48986368
47
8.4
47
85
7
520
25
31
9
32
1.89
48985992--48986357
94
3.9
94
96
0
642
25
32
10
31
1.90
48990370--48990438
32
2.2
32
79
7
79
47
1
2
47
1.25
48990442--48990515
11
6.7
11
71
10
53
72
1
21
4
1.08
48990464--48990522
29
2.0
29
83
6
75
69
1
25
3
1.13
48991346--48991486
40
3.6
39
73
10
110
28
17
21
32
1.96
48994983--48995026
14
3.1
15
78
21
51
72
0
6
20
1.07
48995008--48995492
157
3.1
157
87
5
676
55
8
8
27
1.58
48995507--48995807
160
1.9
161
86
6
432
26
8
9
54
1.62
48995909--48995978
27
2.6
27
86
0
104
8
31
34
25
1.86
48998656--48998745
43
2.1
43
97
0
171
47
17
6
27
1.73
49002140--49002311
72
2.4
74
81
9
212
39
1
34
25
1.63
49002259--49002309
19
2.7
19
93
3
86
43
0
31
25
1.55
49002260--49002316
19
3.0
19
87
5
53
40
0
31
28
1.57
49004485--49004517
16
2.1
16
100
0
66
18
30
12
39
1.87
49005994--49006061
20
3.4
20
80
8
75
32
8
23
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49005987--49006078
40
2.3
40
76
10
98
32
9
22
34
1.87
49007290--49007331
21
2.0
20
90
4
66
7
19
2
71
1.20
49011549--49011584
17
2.1
17
89
5
54
19
2
11
66
1.35
49015579--49015621
21
2.0
21
86
8
61
34
0
6
58
1.25
49018086--49018124
19
2.0
19
85
5
51
30
0
5
64
1.15
49029950--49029995
23
2.0
23
87
8
67
45
10
0
43
1.39
49029995--49030054
20
2.8
22
78
17
72
43
0
1
55
1.10
49031051--49031109
16
3.7
15
80
8
64
38
1
27
32
1.67
49033325--49033419
26
3.7
26
85
1
129
38
23
11
26
1.89
49038842--49039224
128
2.9
128
89
5
525
34
18
17
29
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279