Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  102  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32610266--32610335
28
2.4
28
77
13
79
31
8
2
57
1.44
32610244--32610314
13
4.9
14
73
17
56
29
4
4
61
1.33
32610937--32610982
17
2.6
17
86
10
58
30
0
10
58
1.32
32623193--32623313
61
2.0
60
88
3
181
30
21
21
26
1.98
32623126--32623532
145
2.9
135
79
11
385
31
18
20
30
1.96
32623265--32623709
74
6.0
74
84
6
505
31
17
19
31
1.95
32623265--32623709
149
3.0
145
81
8
499
31
17
19
31
1.95
32623265--32623709
223
2.0
219
83
6
560
31
17
19
31
1.95
32623633--32623860
87
2.6
88
80
5
230
29
17
20
32
1.95
32623772--32623805
13
2.6
13
85
0
50
17
8
5
67
1.37
32625648--32625683
3
12.0
3
100
0
72
33
0
0
66
0.92
32625874--32625914
13
2.9
15
78
10
50
34
7
2
56
1.40
32626524--32626569
17
2.6
17
86
10
58
30
0
10
58
1.32
32628393--32628439
22
2.1
22
100
0
94
36
4
21
38
1.73
32628598--32628701
43
2.4
43
91
0
163
27
32
19
20
1.96
32628951--32628991
19
2.2
19
86
4
57
70
4
2
21
1.18
32628917--32628990
31
2.4
31
78
13
82
64
4
4
27
1.29
32633552--32633610
22
2.7
22
82
10
68
42
37
0
20
1.52
32633689--32633791
7
14.1
7
72
8
53
42
28
0
28
1.62
32633692--32633796
14
7.2
14
68
8
66
44
25
0
28
1.60
32633704--32633783
21
3.6
21
71
12
70
43
26
1
28
1.62
32633954--32634295
41
8.4
41
88
1
499
19
22
23
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32633954--32634295
122
2.8
123
88
2
519
19
22
23
33
1.97
32633954--32634367
41
10.1
40
86
3
465
19
22
22
34
1.97
32633954--32634366
122
3.4
124
82
5
491
19
22
23
34
1.96
32633954--32634366
163
2.5
163
85
4
492
19
22
23
34
1.96
32644933--32645001
34
2.0
33
81
15
79
52
2
8
36
1.47
32645071--32645155
31
2.8
31
83
5
93
55
1
2
41
1.20
32645095--32645157
31
2.0
31
90
0
99
55
0
3
41
1.16
32646377--32646410
17
2.0
17
88
11
52
11
17
17
52
1.73
32648540--32648581
6
7.0
6
97
0
66
16
0
45
38
1.48
32651357--32651427
35
2.0
35
100
0
142
28
35
5
30
1.80
32659365--32659663
95
3.1
95
94
0
490
23
18
20
38
1.94
32661428--32661464
18
2.1
18
89
0
56
32
27
16
24
1.96
32661428--32661668
114
2.1
114
96
0
448
35
18
14
31
1.91
32668841--32668890
23
2.1
24
96
3
93
20
32
4
44
1.70
32670148--32670173
11
2.4
11
100
0
52
7
30
0
61
1.24
32670233--32670297
30
2.2
30
91
5
105
27
3
9
60
1.43
32670372--32670410
20
1.9
19
85
10
51
20
0
15
64
1.30
32670878--32670907
11
2.7
11
94
0
51
60
3
0
36
1.14
32674148--32674186
13
2.9
13
84
3
51
56
2
0
41
1.13
32674783--32674888
29
3.7
29
76
2
88
45
4
16
33
1.69
32674982--32675041
28
2.1
28
82
11
70
43
0
16
40
1.48
32676083--32676209
59
2.2
59
88
0
182
52
6
6
34
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32678487--32678563
40
1.9
40
91
0
127
23
24
25
25
2.00
32678994--32679044
21
2.4
21
93
0
75
33
15
7
43
1.76
32681197--32681246
27
1.9
25
88
8
73
50
4
6
40
1.46
32681324--32681354
16
1.9
16
93
0
53
32
0
3
64
1.09
32689229--32689269
21
1.9
22
85
5
57
29
7
17
46
1.74
32692843--32692879
17
2.1
17
90
10
56
75
2
5
16
1.10
32693655--32693740
40
2.2
40
84
0
109
33
9
16
40
1.80
32693936--32694044
45
2.6
41
75
12
105
22
20
16
41
1.90
32693949--32694044
45
2.1
45
86
0
129
22
18
15
42
1.88
32697349--32697391
22
1.9
23
85
4
61
13
32
4
48
1.63
32699471--32699579
45
2.4
45
85
1
137
30
22
13
33
1.93
32708623--32708869
9
27.8
9
68
19
85
64
1
1
32
1.11
32708681--32708786
28
3.9
26
76
11
90
61
1
0
35
1.13
32708681--32708843
26
5.6
28
72
16
100
61
2
1
34
1.17
32708626--32708862
19
12.8
18
69
19
107
64
1
1
32
1.11
32708627--32708762
36
3.6
37
77
11
109
65
1
0
33
1.02
32708712--32708795
35
2.4
34
84
11
100
66
1
1
30
1.07
32708752--32708824
35
2.1
35
78
17
62
61
1
2
34
1.19
32708829--32708869
20
2.0
20
86
13
57
75
0
2
21
0.92
32709296--32709556
9
27.6
9
68
15
91
36
2
3
57
1.29
32709285--32709375
20
4.2
20
68
26
60
29
1
4
64
1.20
32709296--32709556
19
13.8
18
66
15
91
36
2
3
57
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32710531--32710572
22
1.9
22
90
0
66
47
11
11
28
1.76
32715440--32715481
22
1.9
22
90
0
66
28
11
11
47
1.76
32723579--32723644
31
2.1
31
94
0
114
28
16
10
43
1.81
32730583--32730640
25
2.3
25
87
0
80
15
24
17
43
1.87
32730595--32730656
25
2.5
25
81
5
72
19
20
20
38
1.93
32730780--32730853
33
2.2
33
95
0
130
29
4
18
47
1.67
32732120--32732154
9
3.8
9
85
7
52
0
37
0
62
0.95
32733633--32733672
20
2.0
20
90
0
62
25
20
27
27
1.99
32736469--32736579
51
2.2
52
91
1
179
45
6
19
27
1.74
32737920--32737969
10
5.0
10
79
13
50
68
2
6
24
1.23
32739127--32739167
20
2.0
20
100
0
82
34
17
0
48
1.47
32741423--32741522
20
5.3
19
68
23
68
68
1
4
27
1.14
32741423--32741544
8
13.9
9
68
22
57
68
0
4
26
1.16
32741425--32741522
28
3.6
26
81
12
110
67
1
4
27
1.15
32751105--32751191
43
2.0
43
84
8
115
28
27
18
25
1.98
32762969--32762998
6
5.0
6
95
0
51
66
20
0
13
1.24
32764137--32764200
32
2.0
32
100
0
128
43
18
12
25
1.85
32767367--32767397
15
2.1
15
100
0
62
19
16
19
45
1.86
32768877--32768941
29
2.3
27
81
5
67
43
4
6
46
1.49
32769100--32769161
30
2.1
30
84
0
79
38
0
8
53
1.31
32771331--32771365
16
2.2
16
100
0
70
20
40
22
17
1.92
32772403--32772469
30
2.2
30
86
5
91
55
5
0
38
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32774891--32774919
11
2.6
11
100
0
58
37
6
10
44
1.65
32775254--32775296
22
2.0
22
90
0
68
48
11
6
32
1.66
32780260--32780575
130
2.4
129
88
4
478
34
19
18
28
1.95
32781478--32781664
75
2.5
75
99
0
365
48
11
11
28
1.74
32783016--32783066
18
2.9
17
83
11
68
19
0
5
74
1.02
32783737--32784558
88
9.3
88
78
3
740
23
24
20
31
1.98
32783784--32783918
44
3.1
44
71
8
121
19
26
22
31
1.97
32783739--32784516
264
3.0
265
85
2
935
23
23
20
32
1.98
32789965--32790082
59
2.0
59
83
0
146
25
16
27
31
1.96
32795559--32795678
53
2.3
53
89
0
186
27
19
25
27
1.99
32795565--32795709
53
2.7
53
86
4
184
27
16
27
28
1.97
32798089--32798255
84
2.0
84
92
0
280
34
24
14
25
1.94
32798326--32798657
166
2.0
165
92
1
558
34
18
19
26
1.96
32798502--32798817
130
2.4
129
87
4
460
34
18
18
28
1.95
32805681--32805713
12
2.8
12
95
0
57
63
0
9
27
1.24
32806628--32806683
10
5.7
9
80
16
58
69
1
5
23
1.18
32806624--32806683
20
3.0
19
87
4
84
70
1
6
21
1.20
32806622--32806681
30
2.0
31
84
15
81
70
1
6
21
1.20
32810436--32810460
6
4.2
6
100
0
50
32
0
0
68
0.90
32810759--32810800
22
1.9
22
85
9
59
69
4
0
26
1.08
32813346--32813415
30
2.5
27
80
13
86
40
18
0
41
1.51
32813351--32813409
30
2.0
30
100
0
118
42
20
0
37
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32814451--32814486
18
2.0
18
88
0
54
27
0
2
69
1.02
32819650--32819685
13
2.8
14
84
16
51
27
25
0
47
1.52
32819637--32819677
18
2.2
19
87
12
59
29
24
0
46
1.53
32819782--32819839
23
2.5
23
97
0
107
44
43
5
6
1.53
32820207--32820258
15
3.4
15
81
2
68
50
11
1
36
1.50
32821181--32821244
32
2.0
32
85
8
87
46
7
0
45
1.32
32821758--32821786
13
2.1
14
93
6
51
44
3
0
51
1.18
32822915--32823368
44
10.4
44
80
5
431
29
22
17
30
1.96
32827657--32827697
12
3.3
13
76
10
50
41
7
2
48
1.44
32832107--32832136
10
3.0
10
95
0
51
66
0
13
20
1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279