genome.fa.s8.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  216  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70673542--70673638	49	2.0	48	97	0	176	22	23	26	25	1.99
70676567--70676775	37	5.7	37	82	0	222	40	27	11	21	1.87
70682751--70682797	19	2.2	21	85	14	62	55	4	0	40	1.19
70683377--70683430	28	1.9	28	88	0	81	24	11	1	62	1.37
70694032--70694258	49	4.6	49	85	2	292	26	18	26	28	1.98
70694032--70694266	99	2.4	100	86	2	321	25	19	26	28	1.99
70696821--70696912	40	2.3	40	86	3	123	22	14	23	39	1.91
70700262--70700295	10	3.3	10	88	8	50	58	17	20	2	1.51
70709264--70709335	36	2.0	36	91	2	119	27	15	8	48	1.73
70712339--70712370	15	2.0	17	88	11	50	62	0	6	31	1.20
70713469--70713514	18	2.4	18	82	7	56	39	2	6	52	1.40
70713588--70713660	38	2.0	37	86	7	105	49	6	16	27	1.71
70714146--70714251	53	2.0	53	100	0	212	30	9	28	32	1.88
70736377--70736409	16	2.1	16	100	0	66	51	30	0	18	1.46
70739120--70739195	35	2.2	35	82	0	89	22	22	25	30	1.99
70742387--70742450	25	2.7	22	75	13	56	45	1	7	45	1.42
70744866--70744905	20	2.0	20	100	0	80	10	0	30	60	1.30
70755515--70755544	2	15.0	2	92	0	51	46	0	3	50	1.18
70755998--70756092	27	3.4	28	89	2	129	26	12	28	32	1.93
70756023--70756106	27	3.0	27	87	5	96	29	11	25	33	1.91
70758126--70758167	22	1.9	22	95	0	75	35	19	23	21	1.96
70767417--70767486	24	2.8	25	87	6	90	52	1	31	14	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70768394--70768457	11	5.9	11	83	3	76	42	18	0	39	1.51
70768591--70768723	47	2.8	47	83	8	162	33	7	6	52	1.54
70769705--70769737	7	4.7	7	100	0	66	27	0	15	57	1.38
70769712--70769757	14	3.3	14	82	14	51	28	2	15	54	1.53
70773875--70774376	126	4.0	126	90	0	801	28	19	17	34	1.94
70774905--70774975	19	3.8	19	81	12	85	42	18	1	38	1.59
70774905--70774949	20	2.3	20	92	3	74	44	13	2	40	1.56
70775083--70775124	15	2.7	16	82	13	52	47	26	0	26	1.52
70776034--70776103	31	2.3	31	87	5	97	45	10	8	35	1.68
70780866--70780906	21	2.0	21	90	0	64	29	21	29	19	1.98
70785256--70785311	25	2.3	26	81	12	73	14	19	10	55	1.68
70785705--70785765	30	2.0	32	87	6	90	50	8	3	37	1.48
70794235--70794261	6	4.5	6	100	0	54	51	33	0	14	1.43
70796006--70796053	26	1.9	24	87	8	69	29	0	6	64	1.18
70805473--70805648	46	3.8	46	78	11	180	19	20	29	30	1.97
70805469--70805641	93	1.9	93	90	2	276	20	20	30	28	1.98
70810529--70810562	12	2.8	12	95	0	59	14	11	44	29	1.81
70815209--70815328	43	2.7	44	80	6	136	37	15	19	27	1.92
70817297--70817335	17	2.4	17	86	4	53	23	0	2	74	0.94
70821955--70822062	26	4.2	26	91	2	164	34	7	22	36	1.82
70829029--70829126	26	3.8	26	93	0	160	32	9	22	35	1.86
70832448--70832483	8	4.4	8	93	6	63	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70839388--70839458	28	2.5	28	88	0	97	29	28	11	30	1.91
70844428--70844525	28	3.5	28	77	2	115	28	34	20	16	1.94
70844397--70844527	57	2.3	57	90	0	208	28	35	17	18	1.93
70844398--70844497	29	3.4	29	72	5	94	29	37	17	17	1.92
70846493--70846552	28	2.2	26	77	11	66	26	26	11	35	1.91
70846507--70846578	28	2.6	28	88	0	99	29	27	12	30	1.93
70848461--70848495	16	2.1	17	89	5	54	45	0	11	42	1.40
70849977--70850201	40	5.7	40	86	5	287	25	27	22	24	2.00
70849977--70850201	79	2.8	79	87	5	319	25	27	22	24	2.00
70849977--70850201	119	1.9	120	86	6	323	25	27	22	24	2.00
70856824--70856856	15	2.1	16	88	5	50	30	6	12	51	1.63
70858578--70858671	33	2.9	33	72	18	99	31	26	18	23	1.97
70858609--70858663	29	1.9	28	85	3	74	32	27	18	21	1.96
70858677--70858759	31	2.7	31	92	3	134	27	24	16	31	1.97
70858970--70859021	25	2.1	25	89	3	79	26	21	19	32	1.97
70858977--70859046	25	2.8	25	86	0	95	25	24	22	27	2.00
70859842--70859902	27	2.3	28	83	10	76	27	22	19	29	1.98
70859975--70860072	27	3.6	27	81	13	110	34	9	16	39	1.80
70860049--70860194	27	5.4	27	74	8	127	29	10	19	39	1.86
70859979--70860136	54	2.9	54	80	6	158	31	8	18	41	1.81
70860193--70860284	27	3.4	27	83	3	114	42	7	20	29	1.80
70862580--70862677	40	2.5	40	89	0	142	24	17	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70862586--70862716	40	3.3	40	84	2	138	25	15	24	35	1.94
70862701--70862756	28	2.0	28	92	0	94	28	10	28	32	1.90
70864105--70864148	22	2.0	23	86	4	63	34	6	20	38	1.79
70881099--70882414	652	2.0	653	97	0	2481	27	20	22	30	1.98
70883287--70883526	117	2.1	117	98	0	462	29	13	21	35	1.91
70888929--70889059	51	2.6	50	83	4	158	25	19	26	29	1.98
70888929--70889070	49	2.9	48	81	4	167	26	19	26	28	1.99
70890861--70890994	40	3.4	39	85	4	160	22	15	26	35	1.94
70893811--70893850	21	1.9	21	90	10	64	62	0	10	27	1.27
70894771--70894934	35	4.6	35	72	0	130	15	7	31	45	1.74
70897707--70897742	19	1.9	19	88	5	56	44	11	0	44	1.39
70898038--70898098	30	2.0	30	83	0	77	31	22	8	37	1.84
70907136--70907223	27	3.2	27	81	1	104	35	20	21	22	1.96
70914958--70915035	27	2.9	27	90	1	122	34	21	23	20	1.97
70916254--70916323	18	3.9	18	79	5	63	64	1	30	4	1.21
70925640--70925737	40	2.5	40	91	0	169	23	18	26	31	1.97
70931066--70931210	73	2.0	73	87	2	211	41	13	18	26	1.87
70933927--70933969	22	2.0	21	86	4	59	48	0	0	51	1.00
70933939--70933982	13	3.3	14	81	6	56	54	0	0	45	0.99
70933943--70934156	31	6.6	31	67	23	88	51	1	3	43	1.28
70934467--70934500	16	2.1	17	88	5	52	29	14	0	55	1.40
70936460--70936517	30	2.0	29	82	3	71	34	22	5	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70936684--70936809	27	4.8	27	78	6	107	30	25	21	22	1.98
70936684--70936787	27	3.9	27	86	5	122	31	26	18	23	1.97
70939219--70939479	46	5.6	46	77	8	233	22	29	20	27	1.98
70939265--70939479	94	2.3	94	100	0	430	22	30	20	26	1.98
70939171--70939434	140	1.9	142	82	6	340	23	29	19	28	1.98
70943018--70943287	136	2.0	136	97	1	506	34	20	15	28	1.94
70946910--70946943	18	1.9	18	88	5	52	23	11	17	47	1.81
70954364--70954405	15	2.8	15	81	0	57	57	4	14	23	1.56
70954394--70954428	15	2.3	15	95	0	61	48	0	14	37	1.44
70958306--70958355	9	5.6	9	87	0	73	46	18	10	26	1.80
70958375--70958415	6	6.5	6	89	10	64	17	0	2	80	0.82
70958375--70958412	14	2.9	13	92	7	60	18	0	2	78	0.86
70963599--70964027	40	10.7	40	97	0	786	32	20	25	22	1.98
70969155--70969191	9	4.1	9	86	13	58	45	10	10	32	1.74
70969684--70969729	23	2.0	23	91	0	74	36	2	2	58	1.22
70972487--70972544	30	1.9	30	92	0	98	32	12	25	29	1.92
70972869--70973125	47	5.6	48	75	13	161	28	19	28	22	1.98
70979551--70979607	29	1.9	30	89	3	89	31	12	26	29	1.92
70979947--70980211	47	5.7	46	74	12	175	27	20	30	22	1.98
70983776--70983847	33	2.2	33	84	0	99	22	31	25	20	1.98
70987968--70988028	30	2.0	30	93	0	104	29	4	24	40	1.76
70988340--70988428	28	3.1	28	82	3	97	28	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70988353--70988428	29	2.7	28	89	2	107	25	13	31	30	1.93
70988353--70988438	28	3.0	26	78	20	84	26	11	30	31	1.92
70993330--70993408	40	2.0	39	82	2	95	30	30	21	17	1.96
70993486--70993641	47	3.3	47	82	4	156	25	30	11	32	1.91
70993886--70993969	41	2.0	41	93	0	141	15	28	9	46	1.77
70996979--70997080	29	3.6	28	80	11	100	25	14	29	30	1.95
71014154--71015414	47	26.8	47	96	0	2240	33	8	29	28	1.87
71015555--71015628	37	2.0	37	86	5	105	22	16	31	29	1.96
71017485--71017630	43	3.4	43	96	0	274	22	15	35	26	1.94
71017612--71017685	29	2.6	29	84	4	96	25	17	32	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279