genome.fa.s8.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  46  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15423325--15424140	40	20.4	40	99	0	1605	27	7	12	52	1.65
15424244--15424438	55	3.6	53	76	8	178	35	17	25	22	1.95
15424251--15424451	108	1.8	110	85	4	282	34	17	24	22	1.96
15426644--15426682	6	6.5	6	96	0	69	17	20	15	46	1.84
15426650--15426688	18	2.2	18	90	0	60	17	23	12	46	1.83
15426826--15426860	18	1.9	18	88	0	52	45	14	17	22	1.84
15429442--15429492	22	2.4	22	96	3	95	11	35	37	15	1.84
15435128--15435333	46	4.5	44	73	15	159	24	29	19	26	1.99
15435128--15435390	138	1.9	138	83	7	347	24	29	20	26	1.99
15444216--15444248	17	1.9	17	100	0	66	39	0	6	54	1.25
15444225--15444255	13	2.4	13	100	0	62	38	0	6	54	1.26
15447035--15447183	76	2.0	75	98	1	289	34	24	16	25	1.95
15447439--15447581	71	2.0	71	91	0	232	29	26	27	16	1.97
15450006--15450173	86	2.0	86	93	0	291	32	33	10	24	1.89
15452708--15452750	22	2.0	22	90	9	70	37	0	11	51	1.39
15455715--15455748	16	2.1	17	88	5	52	76	8	0	14	1.01
15466078--15466145	29	2.2	29	78	14	75	35	20	0	44	1.52
15475321--15475355	13	2.8	13	86	4	54	0	25	0	74	0.82
15479108--15479165	29	2.0	30	89	3	91	50	0	0	50	1.00
15479422--15479464	19	2.3	19	79	0	50	30	2	2	65	1.18
15482252--15482296	17	2.6	18	89	10	76	51	8	8	31	1.64
15483208--15483247	11	3.9	11	75	18	50	65	0	35	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15484622--15484864	80	2.9	88	82	8	256	35	20	15	29	1.93
15484710--15487056	72	30.9	74	83	8	2038	33	20	16	29	1.95
15484863--15485031	86	2.0	85	87	5	245	34	19	17	28	1.94
15485255--15485433	90	2.0	90	91	2	288	36	17	16	29	1.92
15485338--15487717	72	32.0	74	85	8	2578	32	21	17	29	1.96
15485338--15487715	144	16.0	145	89	5	3060	32	21	17	29	1.96
15486389--15486553	86	1.9	84	87	4	242	33	20	16	29	1.95
15486998--15487114	58	2.0	59	88	1	173	30	23	18	26	1.98
15488761--15488798	7	5.7	7	81	12	53	0	15	0	84	0.63
15488759--15488800	12	3.5	12	87	6	50	0	16	0	83	0.65
15488762--15488798	19	1.9	19	94	0	65	0	16	0	83	0.64
15498024--15498117	17	5.1	18	72	22	70	47	10	11	29	1.74
15498668--15498699	15	2.0	17	88	11	50	62	6	0	31	1.20
15499208--15499249	11	3.9	11	75	6	50	66	0	33	0	0.92
15512466--15512559	34	2.8	34	81	0	107	29	23	24	22	1.99
15527403--15527427	13	1.9	13	100	0	50	32	16	16	36	1.90
15529108--15529277	47	3.6	47	86	3	241	33	8	30	27	1.86
15533119--15533217	52	1.9	52	95	0	180	45	18	10	26	1.80
15537446--15537521	31	2.5	31	86	6	109	26	25	18	30	1.98
15537727--15537888	26	6.3	26	88	2	233	27	22	20	28	1.99
15538690--15538776	27	3.2	27	90	3	122	18	25	20	35	1.95
15538807--15539165	27	13.3	27	76	7	275	31	9	20	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15538919--15539151	81	2.9	78	85	6	306	30	8	20	41	1.81
15539142--15539273	27	4.9	27	81	5	142	40	7	22	29	1.82
15539251--15539303	27	2.0	27	92	0	88	28	1	22	47	1.62
15539154--15539273	54	2.2	54	90	0	195	40	8	23	27	1.83
15539154--15539300	54	2.7	54	86	0	177	38	6	23	31	1.81
15539254--15539312	27	2.2	27	84	0	73	32	3	18	45	1.66
15553157--15553217	27	2.3	27	94	0	104	40	22	8	27	1.82
15552180--15553173	27	36.8	27	97	0	1819	40	21	8	30	1.82
15552315--15553282	81	12.0	81	96	1	263	39	22	7	29	1.82
15553157--15553282	27	4.7	26	76	7	101	37	23	8	30	1.85
15553272--15553346	27	2.8	27	93	0	123	36	18	22	22	1.95
15554005--15554055	27	1.9	26	84	4	66	17	27	19	35	1.94
15564978--15565206	41	5.6	41	78	3	201	35	14	29	20	1.92
15565076--15565170	40	2.3	40	85	3	118	30	15	32	21	1.94
15566730--15566863	41	3.2	41	88	3	178	29	25	17	27	1.98
15568200--15568258	26	2.3	26	93	0	100	27	37	18	16	1.93
15571860--15571884	12	2.1	12	100	0	50	32	0	0	68	0.90
15572683--15572965	115	2.5	113	79	8	283	38	21	13	26	1.91
15576751--15576958	14	14.7	14	72	11	66	43	33	0	22	1.60
15576721--15576849	7	18.1	7	75	9	73	36	39	0	24	1.55
15576767--15576869	21	4.9	21	80	4	91	38	40	0	20	1.53
15576857--15576895	7	5.6	7	90	0	51	51	25	0	23	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15579976--15580172	98	2.0	97	90	1	304	32	22	9	36	1.86
15580221--15580256	3	12.0	3	100	0	72	33	0	0	66	0.92
15580721--15580778	13	4.4	13	72	10	55	39	29	8	22	1.84
15585443--15585476	17	2.0	17	94	0	59	50	0	20	29	1.49
15585445--15585485	17	2.4	17	87	0	55	56	0	12	31	1.36
15586777--15586813	18	2.1	18	100	0	74	21	24	16	37	1.93
15587197--15587461	40	6.7	40	87	4	340	24	21	28	25	1.99
15587197--15587494	119	2.5	118	81	6	316	25	21	28	25	1.99
15588220--15588319	50	2.0	50	100	0	200	52	6	18	24	1.67
15594461--15594645	79	2.3	81	84	7	236	24	22	27	25	2.00
15594462--15594645	40	4.6	40	83	9	216	24	22	27	25	2.00
15594462--15594678	79	2.7	79	81	7	201	25	22	27	24	2.00
15602482--15602706	40	5.7	40	82	8	255	24	21	27	25	1.99
15621275--15621308	17	2.0	17	88	0	50	47	0	20	32	1.51
15622165--15622247	43	1.9	43	85	4	114	25	12	26	36	1.91
15655091--15655144	27	2.0	27	96	0	99	50	18	5	25	1.69
15666961--15667183	47	4.7	47	78	8	206	24	30	18	27	1.98
15667010--15667181	94	1.8	94	87	2	256	25	30	17	26	1.97
15668300--15668393	49	1.9	49	95	0	170	42	12	6	38	1.69
15671291--15671485	40	4.9	39	85	6	257	25	27	21	25	1.99
15676964--15677021	28	2.0	29	87	9	84	15	41	22	20	1.90
15680037--15680143	53	2.0	53	96	0	196	25	16	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15684649--15684905	46	5.5	47	77	9	186	22	29	19	28	1.98
15684742--15684945	46	4.4	45	77	13	157	23	28	19	28	1.98
15689656--15689681	3	8.7	3	100	0	52	65	0	34	0	0.93
15692228--15692330	40	2.5	41	82	1	109	33	27	14	25	1.94
15697037--15697074	20	1.9	20	88	0	58	36	31	13	18	1.89
15727187--15727265	37	2.1	37	90	0	122	25	31	18	24	1.98
15727384--15727640	47	5.5	47	93	0	415	28	29	8	33	1.87
15735749--15735806	27	2.2	26	84	9	73	51	13	5	29	1.63
15739838--15739914	39	2.0	39	94	5	138	25	18	10	45	1.81
15746637--15746699	30	2.1	30	93	0	108	25	3	14	57	1.52
15748740--15748807	33	2.1	33	100	0	136	32	17	20	29	1.96
15752905--15752986	40	2.0	40	100	0	164	14	24	23	37	1.92
15755068--15755127	24	2.5	24	83	5	68	28	3	6	61	1.37
15756441--15756495	26	2.1	27	86	3	76	52	38	1	7	1.40
15757619--15757656	15	2.5	15	86	0	58	28	7	2	60	1.38
15757760--15757794	3	11.7	3	87	0	52	31	2	0	65	1.07
15757952--15757999	24	2.1	22	84	7	60	22	8	8	60	1.52
15758437--15758484	24	2.1	22	84	7	60	22	10	10	56	1.63
15761498--15761679	91	2.0	91	96	0	337	33	21	24	20	1.97
15773324--15773580	44	5.8	44	79	4	239	32	16	20	30	1.95
15773355--15773614	132	2.0	132	80	3	290	32	17	21	28	1.96
15773340--15773614	88	3.1	88	76	9	272	32	17	21	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15773330--15773614	44	6.5	44	77	5	155	32	17	21	29	1.96
15775312--15775349	4	9.8	4	82	5	51	18	0	5	76	0.97
15782538--15782581	22	2.0	22	100	0	88	27	22	9	40	1.84
15784211--15784249	18	2.2	18	86	9	53	76	2	0	20	0.90
15796780--15796993	47	4.6	47	91	0	329	31	8	30	28	1.87
15800805--15801022	81	2.7	79	79	8	215	42	10	14	33	1.79
15800867--15801348	87	5.6	87	78	6	441	42	9	14	33	1.78
15801581--15801624	22	2.0	23	86	4	63	65	2	0	31	1.05
15801580--15801633	22	2.6	21	75	11	58	66	1	0	31	1.02
15803152--15803185	17	2.0	17	88	11	52	52	14	2	29	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279