Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  111  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35073021--35073055
18
2.0
17
88
5
52
54
0
0
45
0.99
35073383--35073417
18
2.0
17
88
5
52
54
0
0
45
0.99
35073503--35073537
18
2.0
17
88
5
52
54
0
0
45
0.99
35073744--35073778
18
2.0
17
88
5
52
54
0
0
45
0.99
35073864--35073898
18
2.0
17
88
5
52
54
0
0
45
0.99
35074226--35074260
18
2.0
17
88
5
52
54
0
0
45
0.99
35074346--35074380
18
2.0
17
88
5
52
54
0
0
45
0.99
35074466--35074500
18
2.0
17
88
5
52
54
0
0
45
0.99
35074947--35074981
18
2.0
17
88
5
52
54
0
0
45
0.99
35075187--35075221
18
2.0
17
88
5
52
54
0
0
45
0.99
35075307--35075341
18
2.0
17
88
5
52
54
0
0
45
0.99
35078599--35078861
76
3.5
76
100
0
526
41
22
11
24
1.87
35085297--35085480
30
6.1
30
96
0
323
26
23
6
43
1.78
35090050--35090143
30
3.1
30
90
1
143
25
24
6
43
1.78
35090060--35090137
15
5.2
15
67
11
61
25
21
7
44
1.79
35091552--35091607
24
2.3
24
87
0
85
42
0
1
55
1.10
35092509--35092574
32
2.1
32
83
10
84
56
7
3
33
1.43
35101136--35101207
31
2.3
32
80
7
85
33
16
25
25
1.96
35114101--35114177
37
2.1
37
97
0
145
41
6
2
49
1.42
35125028--35125066
17
2.3
17
86
0
51
46
12
2
38
1.56
35126326--35126379
16
3.4
16
86
0
81
31
1
35
31
1.69
35126358--35126448
45
2.0
44
85
2
119
30
5
28
35
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35126591--35126628
16
2.4
17
82
13
53
52
2
0
44
1.14
35126574--35126860
22
14.0
21
65
21
92
53
3
1
41
1.25
35126674--35126714
13
3.2
12
80
12
55
58
0
0
41
0.98
35126702--35126737
18
2.0
18
100
0
72
66
0
0
33
0.92
35126825--35126859
18
2.0
17
94
5
61
57
0
0
42
0.99
35126629--35126920
59
4.8
60
69
15
192
52
4
1
41
1.33
35126629--35126936
121
2.6
120
94
1
528
52
4
1
40
1.32
35128421--35128450
13
2.3
13
94
0
51
30
13
6
50
1.67
35132168--35132250
18
4.5
18
76
13
80
62
2
1
33
1.16
35132188--35132250
10
6.7
10
72
20
55
63
1
0
34
1.04
35132288--35132329
17
2.5
17
85
11
52
57
4
0
38
1.20
35134441--35134474
4
8.5
4
86
0
50
26
2
26
44
1.69
35135554--35135603
16
3.1
17
76
21
54
40
0
0
60
0.97
35137969--35138040
31
2.3
32
76
9
87
48
11
4
36
1.58
35147630--35147679
25
2.0
25
92
0
82
38
6
18
38
1.75
35152304--35152354
25
2.0
25
88
0
75
39
7
17
35
1.79
35152933--35152963
7
4.4
7
100
0
62
16
25
41
16
1.88
35155271--35155429
32
5.0
32
88
0
239
44
10
11
33
1.76
35155269--35155429
64
2.5
64
92
1
270
44
10
11
33
1.76
35168357--35168400
16
2.8
15
82
6
52
13
4
18
63
1.46
35168357--35168395
16
2.4
16
83
8
53
15
2
20
61
1.45
35170354--35170407
21
2.6
21
77
8
65
31
33
7
27
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35171845--35171900
21
2.7
21
91
0
94
25
8
37
28
1.86
35179452--35179497
23
2.0
23
84
12
60
45
10
6
36
1.65
35183326--35183396
36
2.0
36
85
0
97
32
22
23
21
1.98
35196675--35196728
18
3.0
17
78
10
54
40
11
5
42
1.64
35196746--35196804
18
3.3
18
78
4
57
33
20
16
28
1.95
35198236--35198264
15
2.0
15
93
6
51
51
0
0
48
1.00
35198354--35198422
25
2.9
23
79
8
75
2
31
18
46
1.64
35200083--35201204
28
40.1
28
97
0
2016
48
28
0
22
1.52
35201734--35201987
71
3.6
71
100
0
508
31
11
16
39
1.85
35201819--35201936
41
3.1
41
59
25
96
29
11
18
40
1.85
35203973--35204275
167
1.8
168
88
0
473
34
12
17
35
1.88
35211001--35211044
19
2.2
20
88
4
63
52
4
18
25
1.64
35222142--35222174
16
2.1
16
94
0
57
63
15
15
6
1.49
35229662--35229714
16
3.4
15
74
25
56
56
3
1
37
1.28
35235578--35235625
23
2.1
23
100
0
96
41
12
20
25
1.87
35237830--35237855
7
3.7
7
100
0
52
42
0
11
46
1.40
35238187--35238235
22
2.3
22
82
3
55
48
2
4
44
1.33
35242622--35242659
17
2.3
17
86
4
51
81
0
7
10
0.87
35253297--35253442
73
2.0
73
98
0
283
35
5
7
51
1.53
35253519--35253593
32
2.3
32
84
13
93
40
1
8
50
1.40
35253730--35253763
15
2.2
16
89
5
52
70
5
2
20
1.21
35254915--35254965
25
2.0
25
100
0
102
15
19
31
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35257693--35257761
21
3.4
21
71
15
72
36
1
7
55
1.37
35257748--35257778
15
2.1
14
94
5
53
35
3
6
54
1.42
35263511--35263561
19
2.7
19
93
0
84
25
27
19
27
1.99
35270394--35270467
33
2.3
32
86
11
98
40
0
8
51
1.32
35270412--35270487
31
2.4
32
82
8
84
44
0
7
47
1.32
35272807--35272929
37
3.1
39
74
14
119
31
23
17
26
1.97
35273856--35274012
5
31.4
5
100
0
314
59
0
0
40
0.97
35273848--35274036
10
19.0
10
92
4
60
56
0
0
42
1.03
35274023--35274065
19
2.2
20
87
4
61
37
6
6
48
1.57
35278424--35278468
13
3.3
14
77
22
51
60
0
4
35
1.17
35278507--35278544
12
3.2
12
81
11
51
68
0
31
0
0.90
35281313--35281361
5
10.8
5
75
20
54
16
14
0
69
1.19
35281317--35281360
9
5.0
9
91
5
72
18
11
0
70
1.16
35281313--35281368
13
4.2
13
84
11
78
16
12
0
71
1.15
35284280--35284328
25
2.0
25
84
4
64
36
20
20
22
1.95
35284288--35284339
25
2.1
25
82
7
61
40
21
19
19
1.92
35285584--35285624
21
2.1
18
86
13
55
46
0
4
48
1.23
35285679--35285719
11
3.5
12
84
12
50
68
2
29
0
1.03
35285697--35285739
19
2.3
19
84
8
52
72
2
23
2
1.08
35285706--35285743
18
2.1
18
95
0
67
71
5
18
5
1.25
35286596--35286683
25
3.4
25
87
3
122
18
20
20
40
1.91
35286665--35286728
22
2.9
22
80
0
83
15
25
17
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35290433--35290563
21
6.3
21
84
3
176
14
22
17
45
1.85
35290433--35290563
61
2.1
63
91
2
212
14
22
17
45
1.85
35290736--35290784
21
2.4
20
86
6
71
40
8
28
22
1.82
35295215--35295243
9
3.2
9
100
0
58
20
10
44
24
1.82
35310316--35310380
29
2.2
29
83
5
78
53
3
1
41
1.25
35312344--35312407
25
2.5
25
77
10
67
29
12
4
53
1.59
35315805--35315912
44
2.4
45
84
3
137
31
23
12
33
1.91
35325644--35325699
28
2.0
28
96
0
103
21
14
16
48
1.81
35328010--35328067
29
2.0
29
86
6
82
48
6
3
41
1.47
35328814--35328870
25
2.4
25
85
5
73
40
0
5
54
1.23
35332004--35332212
103
2.0
104
95
2
375
43
21
12
22
1.87
35332576--35332604
5
5.8
5
100
0
58
82
0
17
0
0.66
35333356--35333515
45
3.4
45
67
17
126
30
23
17
28
1.97
35333354--35333583
97
2.4
95
95
1
406
30
22
18
28
1.97
35333608--35334206
44
13.6
44
73
8
466
30
25
16
28
1.97
35333669--35334003
178
1.9
178
96
0
625
28
25
17
29
1.97
35333847--35334179
132
2.5
132
97
0
621
28
26
16
28
1.97
35333608--35334206
132
4.5
133
83
3
611
30
25
16
28
1.97
35345454--35345602
75
2.0
75
97
0
280
32
22
26
17
1.96
35345529--35345921
197
2.0
197
98
0
759
36
14
21
27
1.92
35346004--35346283
140
2.0
140
98
0
542
27
15
20
36
1.93
35346708--35346813
37
2.8
38
77
16
105
50
0
13
34
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35349008--35349164
79
2.0
79
88
0
233
33
7
15
43
1.74
35355036--35355080
20
2.2
20
88
0
63
15
2
2
80
0.92
35357037--35357093
6
9.7
6
78
14
57
80
0
15
3
0.84
35357038--35357093
5
10.8
5
83
9
60
80
0
16
3
0.85
35357246--35357288
20
2.1
21
95
4
79
18
16
16
48
1.81
35359853--35359962
55
2.0
55
96
0
202
26
15
26
31
1.96
35360394--35360448
23
2.3
24
75
3
58
21
10
1
65
1.33
35360570--35360634
3
21.3
3
80
9
69
32
4
1
61
1.26
35360570--35360622
15
3.5
15
89
0
79
33
3
1
60
1.26
35376817--35376884
25
2.8
24
81
16
77
55
1
5
36
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279