genome.fa.s8.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  200  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65429833--65429874	21	2.0	21	90	4	68	28	11	2	57	1.47
65436875--65437056	35	5.2	35	84	7	217	35	22	13	28	1.92
65442868--65442979	57	2.0	57	96	0	206	41	14	8	34	1.77
65452788--65452855	35	1.9	35	87	0	100	16	19	26	38	1.92
65463189--65463229	21	2.0	21	85	0	55	43	0	0	56	0.99
65463462--65463521	30	2.0	30	90	0	93	16	5	6	71	1.25
65481612--65481710	50	2.1	47	83	11	121	39	3	5	52	1.39
65486107--65486194	42	2.1	42	93	2	151	39	10	10	39	1.73
65487937--65488008	23	3.1	23	66	4	63	44	8	12	34	1.72
65500079--65500188	29	3.1	35	68	26	106	37	22	19	20	1.94
65499945--65500233	70	4.1	70	80	5	296	34	21	21	22	1.97
65499922--65500240	140	2.3	140	79	3	347	34	21	20	23	1.97
65500501--65500552	23	2.4	21	75	15	52	65	5	5	23	1.36
65501734--65501953	70	3.1	68	80	6	228	33	22	20	23	1.97
65501913--65501982	29	2.4	29	92	0	113	40	24	15	20	1.91
65502376--65502479	38	2.7	38	76	8	95	33	16	19	30	1.94
65503443--65503570	62	2.1	62	82	2	150	25	11	14	48	1.78
65504001--65504065	32	2.0	32	93	0	112	21	21	12	44	1.85
65506409--65506448	20	2.0	20	90	4	64	47	5	7	40	1.54
65508169--65508294	42	3.0	42	84	2	155	31	25	12	30	1.93
65508236--65508341	49	2.2	48	89	3	158	32	27	13	27	1.94
65508252--65508372	49	2.5	48	82	6	149	29	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65508394--65508573	31	5.8	31	88	2	272	25	27	20	27	1.99
65508549--65508725	50	3.5	50	89	0	264	25	20	16	36	1.94
65516051--65516162	42	2.7	42	90	0	161	33	26	12	27	1.92
65516107--65516243	49	2.9	48	86	4	179	30	27	13	28	1.94
65516265--65516413	31	4.8	31	85	3	219	26	26	18	27	1.98
65516639--65516673	18	1.9	18	100	0	70	40	20	5	34	1.76
65517549--65517583	16	2.1	18	89	10	56	37	14	2	45	1.59
65523737--65523889	23	6.5	23	69	10	67	36	22	24	16	1.94
65523812--65523892	24	3.4	24	79	5	92	40	23	23	12	1.88
65528238--65528272	12	2.9	12	91	0	52	34	0	0	65	0.93
65530946--65530993	3	16.0	3	100	0	96	33	0	0	66	0.92
65534617--65534654	19	2.1	19	90	5	60	31	0	15	52	1.43
65554349--65554806	44	10.3	44	77	3	364	34	16	19	29	1.94
65554375--65554806	89	4.9	89	82	5	421	34	16	18	30	1.93
65554351--65554806	178	2.6	178	80	5	505	34	16	19	29	1.94
65558382--65558459	40	2.0	39	87	2	111	35	20	21	21	1.96
65558514--65558614	40	2.8	37	83	10	111	22	20	25	30	1.98
65558925--65558968	22	2.0	22	86	8	63	20	0	27	52	1.47
65559541--65559588	25	1.9	25	83	8	62	47	2	4	45	1.33
65559918--65559971	7	7.9	7	95	4	101	87	0	0	12	0.56
65559918--65559971	20	2.7	20	97	2	99	87	0	0	12	0.56
65563431--65565047	23	70.7	23	82	7	1730	33	4	24	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65565608--65565814	82	2.5	82	78	8	186	24	11	24	39	1.88
65569704--65569782	20	4.0	20	85	9	108	10	30	18	40	1.84
65569706--65569792	20	4.3	20	81	4	86	10	32	19	37	1.86
65569706--65569792	40	2.2	40	89	0	129	10	32	19	37	1.86
65574521--65574565	23	2.0	22	82	4	54	48	2	8	40	1.47
65580870--65580982	47	2.4	47	92	0	190	15	12	23	48	1.79
65580870--65581007	47	2.9	47	86	4	145	18	13	21	47	1.82
65597171--65597349	86	2.1	87	97	1	342	60	7	6	24	1.48
65601436--65601492	25	2.3	24	82	14	71	35	0	0	64	0.93
65602784--65602940	43	3.6	43	76	10	140	33	16	24	25	1.96
65602759--65602949	88	2.2	88	84	3	242	31	18	24	25	1.97
65604854--65604912	25	2.4	25	88	0	82	35	15	27	22	1.94
65606748--65606782	10	3.5	10	92	0	52	48	5	34	11	1.63
65608303--65608346	19	2.3	19	88	7	63	34	0	0	65	0.93
65608280--65608372	27	3.5	26	78	9	91	32	0	2	65	1.04
65608271--65608371	26	3.9	24	77	12	85	30	0	2	65	1.14
65608389--65608428	16	2.5	15	84	8	53	27	2	2	67	1.16
65609171--65609218	23	2.1	23	100	0	96	54	8	16	20	1.68
65614030--65614147	42	2.7	42	79	11	123	22	21	25	31	1.98
65616030--65616458	36	11.9	36	100	0	858	25	27	8	38	1.84
65633784--65633897	56	2.0	56	98	0	219	17	22	10	49	1.77
65636784--65636883	50	2.0	50	88	0	146	46	7	26	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65645075--65645252	27	6.6	27	81	5	171	28	28	16	26	1.97
65645096--65645251	82	1.9	81	86	3	224	28	28	16	26	1.97
65659852--65659881	10	3.0	10	90	0	51	40	0	3	56	1.16
65667318--65667608	71	3.9	72	82	9	327	31	16	20	30	1.95
65667321--65667608	73	3.9	72	82	6	310	31	16	21	30	1.95
65667554--65667669	58	2.0	58	86	3	162	26	18	24	31	1.97
65667483--65667744	133	2.0	129	89	4	400	29	16	21	32	1.96
65667612--65668001	75	4.9	76	80	13	405	26	17	20	34	1.95
65667894--65667923	15	2.0	15	100	0	60	13	13	6	66	1.43
65667755--65668091	88	3.9	85	83	9	378	25	19	20	34	1.96
65667980--65668014	14	2.5	14	90	0	52	20	17	5	57	1.60
65667755--65668367	177	3.5	172	77	17	539	25	18	19	36	1.94
65667993--65668163	75	2.2	77	85	5	231	25	21	20	32	1.97
65668248--65668279	14	2.3	14	94	0	55	15	12	6	65	1.44
65668197--65668367	87	2.0	87	79	6	186	25	16	19	38	1.92
65669160--65669280	30	4.0	30	96	0	224	26	49	3	20	1.64
65669177--65669259	18	5.3	18	61	31	55	24	49	3	22	1.66
65669161--65669312	30	5.1	29	88	4	205	26	47	3	23	1.67
65669810--65669939	23	5.5	23	69	17	72	35	4	3	56	1.35
65669875--65669946	25	2.8	26	79	6	85	36	5	2	55	1.38
65669961--65670019	25	2.5	24	78	10	68	33	8	6	50	1.59
65669977--65670025	25	2.0	25	91	0	80	34	8	6	51	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65670005--65670063	23	2.8	20	72	16	57	32	6	5	55	1.48
65670178--65670212	16	2.3	15	90	5	52	31	2	2	62	1.24
65680058--65680133	24	3.2	22	67	17	53	32	26	13	27	1.93
65682125--65682163	15	2.5	15	91	4	60	56	15	12	15	1.68
65690575--65690603	5	5.8	5	100	0	58	0	17	0	82	0.66
65692270--65692323	26	2.1	26	96	0	99	22	7	16	53	1.67
65698033--65698088	18	3.1	18	80	14	71	26	0	3	69	1.04
65698450--65698497	21	2.1	21	85	11	60	66	0	2	31	1.03
65698689--65698746	10	5.9	10	76	11	57	58	5	0	36	1.20
65698692--65698769	39	2.0	39	80	14	90	60	6	0	33	1.22
65698681--65698757	31	2.4	32	83	12	104	58	6	0	35	1.24
65698743--65698910	3	55.0	3	70	16	89	62	2	4	30	1.27
65698745--65698795	23	2.2	23	82	0	57	60	3	3	31	1.33
65698790--65698830	16	2.5	17	80	11	50	63	0	4	31	1.15
65698840--65698912	26	3.0	25	78	11	71	63	0	4	32	1.14
65698838--65698912	23	3.1	24	80	14	75	62	0	4	33	1.14
65698878--65698933	22	2.6	21	85	5	67	53	0	5	41	1.24
65699472--65699505	14	2.4	14	90	0	50	5	2	11	79	1.02
65699618--65699663	19	2.3	19	85	7	56	10	13	23	52	1.71
65700686--65701047	78	4.8	76	83	4	444	34	19	15	30	1.93
65701912--65702006	46	2.1	46	83	0	118	23	21	13	42	1.88
65716131--65716191	23	2.7	22	82	7	68	67	4	1	26	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65716155--65716264	43	2.6	42	82	13	136	60	5	4	29	1.39
65716329--65716553	6	37.0	6	71	15	80	60	3	3	33	1.30
65722524--65722548	13	1.9	13	100	0	50	48	16	8	28	1.74
65725723--65725976	43	5.9	43	92	0	427	29	20	28	22	1.98
65726049--65726114	30	2.2	30	83	8	80	56	19	6	18	1.62
65726350--65726411	21	3.0	21	87	0	97	0	50	20	29	1.49
65726823--65726851	14	2.1	14	93	6	51	58	6	0	34	1.25
65727018--65727056	17	2.4	17	86	4	53	48	0	10	41	1.37
65732062--65732251	9	20.6	9	72	11	107	37	1	13	47	1.52
65732062--65732224	71	2.3	69	84	4	202	38	1	12	47	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279