Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  112  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35376817--35376897
25
3.4
24
77
15
71
55
2
6
35
1.38
35376853--35376901
22
2.3
21
86
13
66
55
4
4
36
1.38
35391623--35391669
4
11.8
4
90
0
58
68
0
6
25
1.13
35394893--35395044
43
3.4
43
87
4
196
28
16
25
28
1.97
35397867--35397931
4
17.0
4
81
9
55
75
4
4
15
1.13
35397867--35397931
30
2.1
31
85
2
87
75
4
4
15
1.13
35407615--35407712
49
2.0
49
95
0
178
44
13
7
34
1.71
35416356--35416414
29
2.0
29
96
0
109
32
3
37
27
1.73
35416620--35416672
27
2.0
27
85
10
74
39
1
0
58
1.09
35418571--35418611
6
6.8
6
94
0
55
17
31
26
24
1.97
35418574--35418608
12
2.9
12
91
0
61
17
34
22
25
1.96
35423735--35423760
2
13.0
2
100
0
52
50
0
50
0
1.00
35424217--35424256
19
2.0
21
85
14
57
65
2
5
27
1.27
35424260--35424291
14
2.3
14
94
0
55
28
15
15
40
1.88
35428856--35428952
48
2.0
48
97
0
185
25
12
36
25
1.91
35431925--35431968
21
2.2
20
83
4
52
52
15
0
31
1.44
35433198--35433297
38
2.5
39
90
8
157
13
17
0
70
1.18
35434483--35434522
21
2.0
21
85
5
55
30
7
12
50
1.68
35434713--35434740
5
5.6
5
100
0
56
0
64
0
35
0.94
35444495--35444535
20
2.0
20
95
0
73
46
17
14
21
1.84
35452841--35452875
17
2.1
17
88
0
52
22
8
2
65
1.34
35455026--35455059
15
2.3
15
89
0
50
14
11
11
61
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35456142--35456174
17
2.0
17
94
5
59
36
15
0
48
1.45
35456435--35456581
46
3.2
46
82
2
118
19
24
14
41
1.89
35456455--35456588
46
2.9
46
85
0
169
19
26
14
40
1.89
35463008--35463044
9
4.1
9
92
0
65
45
13
10
29
1.77
35485101--35485158
29
2.0
29
86
3
80
18
46
0
34
1.50
35485511--35485557
17
2.8
17
76
20
53
36
4
6
53
1.46
35487434--35487529
49
2.0
49
80
0
111
28
17
26
28
1.98
35489536--35489579
21
2.1
21
100
0
88
45
4
9
40
1.56
35490379--35490408
15
2.0
15
93
0
51
26
23
6
43
1.78
35502272--35502597
158
2.1
158
90
1
510
36
15
10
36
1.82
35504358--35504384
9
3.0
9
100
0
54
11
44
33
11
1.75
35505252--35505308
22
2.5
23
85
2
71
29
3
31
35
1.75
35505259--35505308
23
2.2
22
85
3
64
30
2
32
36
1.69
35505477--35505589
54
2.1
54
94
0
199
28
18
30
22
1.97
35505967--35506078
39
2.8
39
91
1
179
48
3
17
30
1.65
35510525--35510555
15
2.1
15
100
0
62
54
0
38
6
1.26
35521285--35521329
17
2.6
18
82
13
58
17
4
6
71
1.25
35524947--35525028
42
2.0
42
95
4
148
23
13
23
40
1.89
35525686--35525710
6
4.2
6
100
0
50
16
0
32
52
1.44
35535892--35535916
3
8.3
3
100
0
50
68
0
0
32
0.90
35536990--35537042
26
2.0
26
96
0
97
39
3
28
28
1.74
35539627--35539671
3
16.7
3
82
17
55
24
0
0
75
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35539624--35539672
5
8.8
5
87
12
53
24
0
0
75
0.80
35540457--35540487
6
5.2
6
92
0
53
48
16
19
16
1.81
35540510--35540534
12
2.1
12
100
0
50
40
20
24
16
1.91
35541775--35541842
32
2.1
32
100
0
136
27
22
0
50
1.49
35542414--35542497
38
2.2
38
89
0
132
30
27
21
20
1.98
35550961--35551194
96
2.4
96
87
2
319
22
29
20
26
1.99
35550973--35551295
144
2.2
143
81
4
373
24
30
19
26
1.98
35550962--35551295
48
7.0
48
74
6
273
24
30
19
26
1.98
35556665--35556732
24
2.8
23
79
18
75
4
27
7
60
1.43
35557244--35557289
22
2.1
22
84
8
58
52
0
2
45
1.13
35562392--35562535
46
3.1
46
69
11
123
29
29
20
20
1.98
35562573--35562667
49
1.9
49
95
0
172
22
30
14
32
1.94
35590681--35590721
21
2.0
21
90
0
64
29
21
29
19
1.98
35596230--35596300
29
2.4
28
81
11
72
21
12
4
61
1.47
35599015--35599041
2
13.5
2
100
0
54
51
0
48
0
1.00
35601517--35601576
29
2.1
29
84
12
79
23
6
6
63
1.43
35605274--35605333
27
2.2
27
79
5
68
23
21
30
25
1.99
35605381--35606163
104
7.5
104
97
1
1432
52
16
0
31
1.45
35607321--35607389
33
2.1
33
94
0
120
44
11
15
27
1.81
35609319--35609351
15
2.2
15
100
0
66
60
6
33
0
1.21
35614901--35615095
48
4.0
49
77
12
186
40
13
23
22
1.89
35615618--35615669
16
3.1
16
72
8
50
51
1
9
36
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35615608--35615650
22
2.0
22
85
0
59
53
0
6
39
1.28
35616847--35616878
5
6.6
5
92
7
57
81
0
0
18
0.70
35616848--35616878
9
3.3
9
95
4
53
80
0
0
19
0.71
35621299--35621330
5
6.6
5
92
7
57
81
0
0
18
0.70
35621300--35621330
9
3.3
9
95
4
53
80
0
0
19
0.71
35622846--35623166
90
3.6
88
76
10
267
56
13
4
25
1.55
35623647--35623707
27
2.3
27
91
0
104
47
31
0
21
1.51
35623838--35624058
51
4.4
51
75
13
217
24
24
16
33
1.95
35623840--35624017
96
1.9
97
84
3
245
24
25
17
32
1.97
35623937--35624077
51
2.7
51
83
5
133
23
23
16
36
1.94
35625191--35625325
48
2.8
47
75
7
137
19
27
15
37
1.92
35627129--35627234
34
3.2
32
75
11
88
42
0
14
43
1.45
35627304--35627795
126
3.9
126
84
3
566
38
15
16
28
1.90
35630154--35630200
21
2.3
20
82
7
58
2
14
48
34
1.56
35630448--35630490
18
2.4
18
88
0
59
44
9
25
20
1.81
35630812--35630840
14
2.1
14
93
6
51
17
13
20
48
1.81
35631929--35631969
21
2.0
22
90
9
68
60
4
7
26
1.43
35631997--35632043
21
2.1
22
84
7
60
48
0
4
46
1.21
35634609--35634778
46
3.7
45
87
3
198
43
14
21
20
1.87
35636039--35636090
25
2.1
24
82
10
61
69
1
0
28
0.99
35636268--35636316
21
2.4
21
86
3
64
32
2
30
34
1.69
35636277--35636322
21
2.1
22
92
4
76
26
4
30
39
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35636277--35636332
21
2.7
21
86
5
60
28
3
28
39
1.73
35639516--35639558
22
2.0
22
81
9
52
55
4
11
27
1.55
35655761--35655789
14
2.0
15
93
6
51
51
20
0
27
1.47
35660684--35660736
25
2.1
25
96
0
97
49
24
9
16
1.76
35662614--35662781
43
4.0
43
79
7
173
29
26
18
25
1.98
35663893--35663921
14
2.0
15
93
6
51
51
20
0
27
1.47
35669526--35669566
20
2.0
20
100
0
82
29
9
9
51
1.67
35676121--35676160
20
2.0
20
90
9
64
35
5
2
57
1.34
35677073--35677130
29
2.0
29
100
0
116
24
10
17
48
1.78
35682222--35682311
28
3.2
28
74
14
103
60
4
7
27
1.44
35682222--35682333
57
2.0
57
98
0
215
60
5
7
26
1.44
35682235--35682336
29
3.6
29
77
13
122
62
4
5
26
1.38
35683806--35683858
29
1.9
29
88
11
85
47
0
0
52
1.00
35683844--35683912
35
2.0
35
86
8
97
30
1
4
63
1.22
35683834--35683901
18
3.8
18
75
9
77
35
1
1
61
1.14
35687570--35687645
26
2.8
27
92
6
111
23
3
11
60
1.48
35687586--35687645
26
2.3
26
100
0
120
25
5
11
58
1.53
35688116--35688155
21
2.0
21
85
5
55
47
2
15
35
1.58
35694202--35694237
14
2.6
15
83
16
51
61
2
0
36
1.11
35694815--35694860
23
2.0
23
100
0
92
56
13
0
30
1.37
35695007--35695056
19
2.6
19
87
0
73
18
34
30
18
1.94
35703256--35703317
23
2.5
25
79
12
74
17
29
24
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35703272--35703323
23
2.2
23
86
3
68
13
30
25
30
1.94
35703789--35704144
46
7.7
46
93
0
516
41
14
22
21
1.89
35705059--35705088
14
2.1
14
93
0
51
46
36
0
16
1.47
35711676--35711705
14
2.1
14
93
0
51
46
36
0
16
1.47
35725358--35725488
49
2.7
49
78
5
142
29
27
16
26
1.97
35725463--35725717
46
5.5
46
74
20
185
24
29
17
29
1.97
35731102--35731166
32
2.0
32
96
0
121
38
16
9
35
1.81
35736275--35736385
43
2.6
42
78
12
109
30
26
19
23
1.98
35736275--35736362
43
2.1
44
83
10
112
32
25
20
21
1.97
35743820--35743930
27
4.1
26
85
5
123
34
24
24
17
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279