genome.fa.s8.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  151  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49039032--49039137	54	1.9	55	84	5	144	37	18	15	28	1.91
49039128--49039152	13	1.9	13	100	0	50	64	0	12	24	1.27
49039203--49039238	14	2.6	14	90	0	54	52	2	25	19	1.59
49039234--49039534	73	4.2	70	81	6	298	32	23	15	27	1.95
49040439--49040526	44	2.0	44	95	0	158	25	27	18	29	1.98
49057295--49057335	10	4.3	10	77	22	52	39	2	0	58	1.11
49057298--49057344	18	2.7	17	87	12	69	38	2	0	59	1.09
49058459--49058535	32	2.4	32	80	0	91	44	6	24	24	1.77
49062968--49063044	32	2.4	32	82	0	100	45	6	23	24	1.76
49065353--49065429	27	2.9	27	76	7	75	25	23	27	23	2.00
49065465--49065526	27	2.1	30	85	11	85	72	0	0	27	0.85
49071622--49071651	9	3.3	9	100	0	60	80	20	0	0	0.72
49073150--49073176	3	9.0	3	100	0	54	33	33	0	33	1.58
49077381--49077406	13	2.0	13	100	0	52	46	15	15	23	1.83
49085758--49085799	21	2.0	21	100	0	84	19	23	14	42	1.87
49085889--49085922	5	6.6	5	89	3	50	17	5	0	76	0.98
49089832--49089979	72	2.1	72	94	0	260	29	28	12	29	1.93
49094913--49094942	14	2.1	14	100	0	60	43	0	26	30	1.55
49113228--49113291	24	2.8	23	73	20	62	40	1	4	53	1.31
49130534--49130579	18	2.5	19	75	10	51	45	0	0	54	0.99
49130675--49130714	13	2.9	14	82	17	57	55	0	0	45	0.99
49131055--49131105	25	2.0	26	88	3	77	29	0	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49131667--49131763	33	3.1	33	70	22	109	35	0	11	53	1.37
49131651--49131784	60	2.2	61	88	4	200	31	0	11	56	1.35
49132064--49132116	27	2.0	27	92	7	90	22	28	32	16	1.96
49132065--49132122	27	2.1	27	87	6	82	24	31	29	15	1.95
49137883--49137956	29	2.5	30	80	4	87	31	5	21	41	1.76
49138715--49138780	22	3.0	21	70	12	60	37	1	9	51	1.43
49139435--49139471	5	7.8	5	85	8	51	83	0	0	16	0.64
49153754--49153800	17	2.9	16	84	9	51	8	0	14	76	1.01
49153764--49153800	16	2.2	18	86	13	53	8	0	10	81	0.89
49159859--49159903	12	3.6	12	84	6	54	57	2	2	37	1.23
49161280--49161356	28	2.7	29	87	4	111	29	7	18	44	1.78
49161552--49161591	19	2.0	20	85	9	55	55	7	0	37	1.29
49168159--49168193	15	2.3	15	95	0	61	82	0	14	2	0.77
49179572--49179605	13	2.4	14	90	9	52	0	47	0	52	1.00
49182002--49182026	11	2.3	11	100	0	50	44	8	28	20	1.79
49192671--49192753	41	2.0	41	97	0	157	26	20	16	36	1.94
49208740--49208766	13	2.1	13	100	0	54	29	40	7	22	1.81
49218730--49218813	28	3.0	28	87	8	125	19	3	29	47	1.66
49218757--49218827	23	2.8	24	74	24	74	16	4	32	46	1.67
49219017--49219103	21	4.1	21	82	7	104	16	21	25	36	1.94
49220185--49220371	46	3.9	48	75	15	163	25	14	28	31	1.95
49231405--49231429	12	2.1	12	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49236175--49236222	14	3.2	14	82	11	51	60	8	2	29	1.37
49236253--49236321	31	2.3	31	83	14	83	46	10	18	24	1.80
49247092--49247122	16	1.9	16	93	0	53	35	12	0	51	1.40
49249219--49249269	21	2.4	21	83	0	66	15	31	29	23	1.95
49250039--49250068	15	1.9	16	93	6	53	53	0	16	30	1.44
49254311--49254335	11	2.3	11	100	0	50	8	0	0	92	0.40
49256636--49256689	24	2.2	25	86	3	74	66	12	1	18	1.33
49258117--49258205	39	2.3	38	83	9	101	57	2	1	39	1.19
49258191--49258223	16	1.9	18	88	11	52	69	0	0	30	0.88
49259632--49259659	3	9.3	3	100	0	56	35	32	0	32	1.58
49263415--49263451	16	2.3	16	90	9	58	56	5	27	10	1.55
49267681--49267821	75	1.9	75	85	5	196	23	41	17	17	1.89
49267725--49267919	99	2.0	99	86	2	275	24	40	16	18	1.91
49267800--49267845	24	1.9	24	90	0	74	26	41	13	19	1.88
49267853--49268183	93	3.6	93	77	6	319	23	41	16	19	1.90
49279410--49279450	17	2.3	19	83	8	50	36	0	4	58	1.20
49280565--49280603	20	1.9	21	89	5	62	33	2	5	58	1.33
49285189--49285301	58	1.9	58	81	0	136	46	15	14	24	1.82
49285617--49285641	5	5.0	5	100	0	50	80	0	0	20	0.72
49288490--49288522	16	1.9	18	88	11	52	18	6	3	72	1.18
49294548--49294584	5	7.2	5	93	6	65	21	2	0	75	0.92
49300212--49300261	24	2.1	24	85	7	66	50	0	4	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49309780--49309835	10	5.8	10	76	16	64	37	3	0	58	1.15
49309780--49309837	19	3.1	19	89	0	89	36	3	0	60	1.14
49309779--49309835	29	2.0	28	83	13	71	38	3	0	57	1.16
49318596--49318639	15	2.9	15	79	3	52	38	2	4	54	1.33
49322089--49322282	94	2.1	93	94	1	343	41	18	9	30	1.81
49334756--49334816	21	2.7	24	75	15	65	54	1	0	44	1.10
49340201--49340231	6	5.3	6	96	3	55	87	0	12	0	0.55
49347392--49347576	61	3.0	61	95	0	325	22	25	17	35	1.95
49348750--49348861	18	6.2	18	76	0	107	37	15	11	35	1.83
49348744--49348861	36	3.3	35	80	2	119	36	15	11	37	1.83
49349026--49349117	44	2.1	44	85	4	123	35	21	19	22	1.96
49349811--49349851	12	3.5	11	90	6	55	26	17	0	56	1.41
49350351--49350394	13	3.2	13	87	6	52	54	2	0	43	1.12
49352957--49353166	46	4.6	44	76	13	149	25	30	18	26	1.98
49356211--49356254	22	2.0	22	100	0	88	45	4	9	40	1.56
49356388--49356519	52	2.5	52	93	0	219	24	20	27	28	1.99
49367116--49367255	70	2.0	70	98	0	271	32	12	23	31	1.92
49375917--49375951	4	9.2	4	87	12	56	74	0	25	0	0.82
49378468--49378492	13	1.9	13	100	0	50	44	16	8	32	1.76
49380541--49380628	46	2.0	44	88	4	131	31	14	25	28	1.95
49380543--49380667	44	2.8	45	79	7	128	32	15	24	28	1.95
49381562--49381717	77	2.0	77	97	0	294	39	12	21	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49383966--49384103	68	2.0	68	100	0	276	27	23	4	44	1.72
49383992--49384101	34	3.2	34	63	14	91	30	22	2	44	1.67
49389798--49389948	53	2.8	53	87	4	196	29	27	17	26	1.97
49391614--49391740	42	3.0	42	82	8	145	28	26	14	29	1.96
49391699--49391822	47	2.7	46	84	2	158	29	26	16	28	1.97
49391840--49392019	31	5.8	31	88	5	265	26	27	19	27	1.99
49399315--49399341	13	2.1	13	100	0	54	22	14	22	40	1.90
49399686--49399725	20	2.0	20	100	0	80	65	10	10	15	1.48
49403314--49403372	23	2.5	23	88	5	82	28	0	13	57	1.37
49419800--49419827	10	2.8	10	100	0	56	0	57	0	42	0.99
49420995--49421041	24	2.0	24	83	8	60	48	8	4	38	1.53
49421116--49421158	21	2.0	22	90	4	70	44	0	2	53	1.13
49421576--49421634	28	2.1	28	81	12	68	50	6	5	37	1.51
49422009--49422062	27	2.0	27	82	7	65	38	3	0	57	1.17
49424409--49424438	9	3.2	9	90	9	51	43	0	13	43	1.43
49424409--49424448	19	2.1	19	85	0	53	40	0	12	47	1.41
49424958--49425005	24	2.0	24	100	0	96	45	4	16	33	1.67
49428012--49428053	19	2.4	17	81	14	50	33	0	14	52	1.42
49431901--49431928	6	4.7	6	100	0	56	17	35	17	28	1.93
49433500--49433576	38	2.0	38	94	0	136	45	7	16	29	1.76
49440586--49440645	26	2.4	25	81	13	61	45	3	1	50	1.28
49441928--49441978	23	2.3	23	86	6	70	66	0	3	29	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49444093--49444132	2	20.0	2	100	0	80	0	50	0	50	1.00
49447220--49447265	15	2.8	16	83	12	58	19	10	0	69	1.17
49450141--49450199	16	3.6	17	74	19	63	57	3	3	35	1.32
49451211--49452098	48	18.5	48	100	0	1776	37	18	0	43	1.51
49453696--49453723	5	5.6	5	100	0	56	60	0	0	39	0.97
49456351--49456411	31	2.0	31	96	0	113	37	11	6	44	1.67
49458254--49458295	20	2.1	20	86	8	59	42	2	0	54	1.13
49458260--49458317	25	2.3	25	85	8	82	43	1	0	55	1.10
49459413--49459462	25	2.0	25	84	7	66	26	2	4	68	1.18
49459581--49459940	150	2.4	150	91	3	634	38	3	9	48	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279