genome.fa.s7.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  104  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35750408--35750509	44	2.4	44	82	12	117	33	2	0	63	1.09
35750647--35750698	17	3.0	17	73	21	54	40	5	3	50	1.45
35750849--35750879	14	2.2	14	94	0	53	32	0	6	61	1.21
35754544--35754602	2	29.5	2	85	0	82	50	0	47	1	1.11
35754542--35754608	16	4.2	16	88	0	80	55	0	43	1	1.09
35757777--35757874	23	4.3	23	89	2	153	31	25	21	21	1.98
35757784--35757872	45	2.0	45	93	0	151	31	25	22	20	1.98
35765149--35765246	23	4.3	23	90	2	162	31	26	21	20	1.98
35765156--35765244	45	2.0	45	95	0	160	31	26	22	19	1.97
35772616--35773539	90	10.5	90	88	4	1265	30	15	27	26	1.96
35772572--35773449	45	20.0	45	66	16	403	30	15	27	26	1.96
35773314--35773467	78	2.0	78	96	0	281	31	14	26	27	1.95
35773224--35773539	168	1.9	168	89	1	490	31	13	26	27	1.94
35774972--35775033	25	2.5	24	77	10	63	33	4	0	61	1.17
35774995--35775038	14	3.2	14	80	3	54	38	0	0	61	0.96
35774989--35775042	25	2.1	25	86	10	74	37	0	0	62	0.95
35775342--35775422	40	2.0	40	85	0	108	62	9	2	24	1.38
35775439--35775480	6	7.2	6	86	5	59	69	0	0	30	0.89
35775439--35775480	17	2.4	17	88	4	57	69	0	0	30	0.89
35775679--35775759	7	11.7	7	74	17	62	34	2	0	62	1.08
35775679--35775759	25	3.2	26	79	17	82	34	2	0	62	1.08
35775679--35775760	22	4.0	21	76	16	73	34	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35775702--35775762	10	5.7	10	76	17	52	34	1	0	63	1.04
35776102--35776131	14	2.1	14	93	0	51	30	0	6	63	1.20
35781423--35781470	21	2.3	21	81	0	60	4	58	14	22	1.54
35789135--35789172	19	2.1	19	85	9	53	50	0	7	42	1.31
35789258--35789290	15	2.2	15	94	0	57	42	0	0	57	0.98
35790980--35791116	60	2.3	59	80	8	143	29	19	24	26	1.98
35795134--35795186	28	1.9	27	81	11	63	33	5	3	56	1.41
35795250--35795391	70	2.0	70	94	2	250	26	9	16	46	1.79
35795495--35795548	21	2.6	21	84	0	72	20	0	24	55	1.43
35795664--35795716	21	2.5	21	78	6	54	28	3	20	47	1.68
35796592--35796675	40	2.1	40	88	4	125	22	26	17	33	1.96
35799095--35799130	18	1.9	19	88	5	56	0	19	2	77	0.88
35799401--35799426	10	2.6	10	100	0	52	50	19	7	23	1.73
35803190--35803230	13	3.2	13	76	16	50	63	24	0	12	1.28
35804096--35804142	23	2.0	23	95	0	85	40	27	12	19	1.88
35810876--35810933	25	2.3	25	81	0	71	36	12	29	22	1.90
35813523--35813548	8	3.2	8	100	0	52	23	0	0	76	0.78
35813980--35814022	17	2.5	17	88	3	59	79	4	6	9	1.06
35821508--35821545	17	2.2	17	100	0	76	21	13	26	39	1.89
35833725--35833770	15	2.9	15	78	12	56	71	2	13	13	1.23
35833725--35833768	17	2.8	16	80	10	54	72	2	13	11	1.21
35842568--35842611	21	2.1	21	82	0	52	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35848301--35848327	11	2.5	11	100	0	54	92	0	7	0	0.38
35853928--35853976	22	2.2	23	78	10	57	24	10	14	51	1.73
35853936--35853978	22	2.0	22	90	0	68	23	11	13	51	1.74
35854483--35854528	17	2.7	17	83	6	58	69	4	0	26	1.07
35854486--35854526	16	2.6	16	85	11	57	70	4	0	24	1.06
35855444--35855470	5	5.4	5	100	0	54	81	0	0	18	0.69
35859161--35859236	37	2.1	37	94	0	134	30	3	14	51	1.60
35864642--35864668	4	6.8	4	100	0	54	77	0	0	22	0.76
35866452--35866501	23	2.1	24	88	3	75	44	0	2	54	1.11
35873788--35873823	18	2.0	18	100	0	72	33	22	16	27	1.95
35875385--35875464	3	26.3	3	72	20	53	30	3	1	65	1.18
35875389--35875464	18	4.1	18	80	12	82	30	3	1	64	1.20
35875376--35875468	26	3.6	26	72	10	82	29	3	1	66	1.14
35875489--35875609	15	7.7	15	69	18	52	27	10	4	57	1.50
35880345--35880424	9	8.6	9	75	17	74	82	11	5	1	0.88
35880354--35880424	8	8.8	8	75	9	63	81	12	5	0	0.85
35882286--35882580	88	3.4	88	96	0	545	25	17	27	29	1.98
35882596--35882921	44	7.4	44	71	9	216	34	16	21	27	1.95
35882608--35882921	132	2.4	132	87	0	457	33	16	21	27	1.95
35882945--35883146	44	4.6	44	78	8	223	31	17	23	27	1.97
35882807--35883031	110	2.1	110	91	0	362	36	16	22	25	1.94
35882678--35883153	242	2.0	242	93	0	817	33	16	23	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35882916--35883252	132	2.6	132	91	2	527	32	15	24	27	1.95
35883245--35884460	87	14.0	87	87	3	1675	35	20	23	20	1.96
35883253--35884460	524	2.3	523	91	2	1899	35	20	23	19	1.96
35884571--35884874	68	4.5	67	85	1	401	25	23	23	27	2.00
35885261--35885346	30	2.9	30	91	0	145	15	51	6	26	1.68
35885828--35885915	9	9.0	9	70	17	52	28	4	1	65	1.19
35885830--35885869	12	3.4	12	89	3	55	25	5	0	70	1.08
35885838--35885915	12	6.3	12	75	20	63	30	5	1	62	1.24
35885851--35885919	18	3.8	17	72	24	61	33	4	1	60	1.25
35891814--35891877	33	1.9	33	90	6	103	21	12	4	60	1.50
35895194--35895243	25	2.0	24	84	3	64	40	0	8	52	1.31
35895650--35895733	31	2.7	31	86	0	132	32	13	15	39	1.86
35895764--35895831	31	2.2	31	83	0	82	42	13	7	36	1.72
35906207--35906284	31	2.5	32	83	6	97	43	19	6	30	1.76
35906214--35906297	36	2.5	31	84	13	96	45	14	4	35	1.66
35907605--35907642	20	1.9	20	89	10	60	60	13	0	26	1.33
35911126--35911237	43	2.6	41	77	15	120	28	24	17	29	1.97
35915972--35916167	99	2.0	96	94	3	340	33	17	19	29	1.95
35932891--35932922	16	2.0	16	93	0	55	43	21	0	34	1.53
35937813--35937926	45	2.6	46	82	9	139	27	17	23	31	1.97
35951655--35951793	55	2.5	55	81	2	154	16	25	30	27	1.97
35960174--35960281	26	4.2	26	91	0	180	33	7	23	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35961683--35961820	27	5.1	26	84	6	177	16	23	24	35	1.95
35961683--35961820	54	2.5	53	91	2	213	16	23	24	35	1.95
35961683--35961838	27	5.8	27	81	11	169	17	23	23	35	1.96
35966768--35966875	26	4.2	26	93	0	189	32	7	24	36	1.83
35981785--35982291	46	10.8	46	81	8	511	22	25	14	38	1.91
35981784--35982357	286	2.0	287	88	1	866	22	25	14	36	1.93
35985877--35985958	43	1.9	43	97	0	155	28	30	19	21	1.98
35998296--35998481	96	1.9	97	90	1	293	26	15	26	31	1.95
35999595--35999658	29	2.1	31	83	11	80	35	0	3	60	1.12
35999636--35999668	8	4.1	8	100	0	66	24	0	0	75	0.80
36008734--36009151	44	9.7	44	72	10	288	28	23	17	29	1.97
36008818--36009148	132	2.5	133	85	2	425	29	24	17	29	1.97
36008903--36009152	89	2.8	88	79	8	254	29	23	17	30	1.97
36016071--36016126	19	2.9	20	81	7	71	44	10	17	26	1.82
36018614--36018692	41	1.9	42	89	5	126	17	37	24	20	1.93
36019810--36019913	49	2.1	48	84	8	131	24	30	20	25	1.98
36019951--36020161	94	2.2	94	80	8	234	23	28	17	30	1.97
36029413--36029623	49	4.4	48	73	12	143	26	28	18	26	1.98
36032463--36032506	18	2.5	18	81	3	54	70	2	4	22	1.17
36034189--36034234	16	3.0	15	84	6	65	15	2	28	54	1.53
36040976--36041027	22	2.3	23	80	6	63	42	3	3	50	1.39
36043303--36043355	22	2.4	22	81	6	63	64	5	5	24	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36051315--36051445	65	2.0	65	96	0	244	16	11	35	36	1.84
36054945--36054996	20	2.6	20	81	0	68	61	3	1	32	1.25
36055411--36055560	3	50.0	3	72	13	96	63	2	3	31	1.22
36055411--36055560	17	8.5	17	69	17	85	63	2	3	31	1.22
36055411--36055554	50	2.9	50	76	13	118	63	2	3	31	1.23
36055914--36055982	30	2.3	30	89	0	102	13	2	52	31	1.55
36060450--36060475	2	13.0	2	100	0	52	50	0	0	50	1.00
36065548--36065585	20	2.0	20	94	5	69	42	0	0	57	0.98
36073880--36073934	15	3.5	16	74	18	53	52	0	3	43	1.18
36074055--36074108	26	2.2	25	84	15	69	35	0	3	61	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290