genome.fa.s7.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  148  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50318221--50318257	16	2.3	16	100	0	74	35	18	16	29	1.93
50328987--50329031	21	2.2	20	96	4	81	22	4	26	46	1.70
50332295--50332427	45	3.0	44	82	7	155	33	27	16	22	1.96
50334908--50335106	39	5.1	39	92	0	317	25	29	22	22	1.99
50339489--50339583	43	2.2	43	83	7	122	29	26	17	26	1.98
50341275--50341303	14	2.0	15	93	6	51	48	20	0	31	1.50
50344369--50344436	29	2.3	29	82	5	84	27	29	13	29	1.94
50344258--50345456	174	6.9	174	99	0	2317	30	24	14	29	1.95
50344538--50344610	29	2.5	29	84	6	94	28	30	13	27	1.94
50344712--50344784	29	2.5	29	84	6	94	28	30	13	27	1.94
50344886--50344958	29	2.5	29	84	6	94	28	30	13	27	1.94
50345060--50345132	29	2.5	29	84	6	94	28	30	13	27	1.94
50345234--50345306	29	2.5	29	84	6	94	28	30	13	27	1.94
50345409--50345487	29	2.7	30	82	13	110	29	30	15	25	1.96
50350600--50350711	40	2.8	40	90	2	163	34	17	29	17	1.94
50354637--50354707	29	2.4	30	83	2	99	21	38	2	38	1.68
50363033--50363127	32	3.2	32	59	17	76	24	15	15	44	1.86
50363028--50363143	58	2.0	58	100	0	232	27	13	15	43	1.85
50363296--50363449	41	3.7	41	86	6	211	29	15	26	28	1.96
50368417--50368517	50	2.0	50	88	0	148	24	20	11	42	1.86
50368516--50368577	6	10.2	6	87	1	61	17	20	4	56	1.59
50381375--50381483	48	2.4	47	78	17	131	61	2	0	34	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50381463--50381550	20	4.3	21	72	13	67	53	1	2	43	1.20
50381525--50381604	36	2.2	36	82	8	92	60	2	3	33	1.28
50382057--50382155	9	10.8	9	70	14	60	39	5	0	55	1.22
50382033--50382092	9	6.4	9	74	12	50	36	0	3	60	1.14
50382062--50382267	20	10.9	20	65	23	74	39	2	1	55	1.26
50382167--50382295	9	14.1	9	69	16	70	31	1	3	63	1.21
50382183--50382275	26	3.5	26	77	18	84	31	1	3	64	1.16
50392651--50392699	24	2.0	24	100	0	98	22	12	24	40	1.88
50396215--50396254	17	2.4	17	86	0	53	37	7	30	25	1.83
50397831--50397908	14	5.6	14	76	3	59	38	12	16	32	1.87
50397824--50397925	28	3.7	27	80	2	96	39	10	19	30	1.86
50397858--50397926	14	4.9	14	72	12	61	40	10	20	28	1.85
50398575--50398629	16	3.2	17	82	7	67	16	3	10	69	1.32
50399591--50399639	21	2.3	22	82	10	66	16	22	20	40	1.91
50409802--50409849	20	2.4	20	85	0	69	18	33	14	33	1.91
50411378--50411525	40	3.7	40	80	5	172	25	14	24	35	1.94
50421784--50421808	13	1.9	13	100	0	50	32	28	0	40	1.57
50429661--50429698	18	2.3	16	80	20	51	63	2	7	26	1.35
50429665--50429698	18	1.9	17	94	5	59	64	2	8	23	1.36
50429671--50429712	21	2.0	21	90	0	66	59	2	11	26	1.45
50430772--50430850	39	2.1	38	85	4	113	17	20	20	40	1.90
50436041--50436306	46	5.7	48	80	9	232	23	30	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50436041--50436306	47	5.7	46	81	6	254	23	30	18	27	1.98
50436041--50436306	140	1.9	141	83	5	351	23	30	18	27	1.98
50438836--50438907	36	2.0	36	91	0	117	30	22	15	31	1.94
50445814--50445984	93	1.8	93	93	0	297	28	28	21	21	1.98
50445809--50445981	46	3.7	46	79	10	208	29	27	20	21	1.98
50454982--50455207	40	5.7	40	84	6	255	25	26	21	25	2.00
50454982--50455154	79	2.2	80	86	6	235	26	27	20	26	1.99
50471538--50471758	48	4.6	47	85	2	271	26	16	32	25	1.96
50471538--50471765	96	2.4	96	87	0	312	26	16	31	25	1.96
50477666--50477839	79	2.2	79	90	4	271	25	21	27	24	1.99
50477659--50477806	40	3.7	40	93	1	262	25	22	27	25	2.00
50479255--50479439	94	2.0	92	94	2	325	26	13	19	40	1.89
50481732--50481905	95	1.8	95	87	0	258	24	14	25	34	1.94
50483393--50483544	76	2.0	76	98	0	295	25	13	28	32	1.94
50485948--50486089	40	3.5	40	91	0	221	24	21	26	26	2.00
50485945--50486122	80	2.2	80	86	3	234	25	21	26	25	2.00
50488855--50489268	45	9.2	45	99	0	819	22	17	28	31	1.97
50492424--50492573	27	5.6	27	80	6	151	42	19	7	31	1.79
50492585--50492769	27	6.9	27	85	2	255	28	22	8	40	1.84
50492544--50492769	54	4.2	52	83	6	220	29	22	9	38	1.85
50492544--50492769	81	2.8	82	81	6	221	29	22	9	38	1.85
50492583--50492769	54	3.5	54	92	1	286	28	22	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50492773--50492844	27	2.7	27	86	4	92	41	20	8	29	1.81
50492641--50492790	81	1.9	81	84	0	192	32	24	7	36	1.83
50492830--50493322	27	18.3	27	89	0	743	33	19	21	25	1.97
50492830--50493322	54	9.1	54	97	0	842	33	19	21	25	1.97
50493724--50493794	31	2.3	31	92	0	115	22	16	12	47	1.80
50493724--50493836	6	18.3	6	67	18	63	21	18	13	46	1.82
50493754--50493822	25	2.8	25	84	0	93	21	18	13	46	1.83
50495064--50495271	104	2.0	104	98	0	398	34	9	20	36	1.84
50495931--50496061	45	3.0	45	90	5	189	22	20	30	25	1.98
50495963--50496101	41	3.3	41	80	13	106	25	19	30	23	1.98
50496920--50497248	50	6.9	50	74	14	245	23	30	18	27	1.98
50496972--50497241	46	5.8	44	74	9	155	22	29	20	27	1.98
50496930--50497246	94	3.3	94	74	12	283	23	30	18	27	1.98
50501095--50501173	37	2.1	37	88	4	115	25	30	18	25	1.98
50501292--50501405	47	2.4	47	85	0	147	26	31	9	32	1.88
50508735--50508863	50	2.6	50	92	0	204	24	29	17	28	1.97
50513765--50514077	96	3.3	96	84	1	396	24	17	30	26	1.97
50513765--50514024	48	5.4	48	91	0	403	24	17	31	26	1.97
50513763--50514077	144	2.2	142	84	5	418	24	18	30	26	1.98
50520594--50520696	32	3.2	32	62	20	77	27	11	33	28	1.91
50520572--50520763	66	2.9	66	97	0	357	28	13	29	28	1.94
50520626--50520730	34	3.1	34	62	20	85	29	14	30	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50526816--50526901	23	3.7	23	74	10	68	75	1	8	15	1.09
50528483--50528539	23	2.6	23	76	15	57	68	5	8	17	1.35
50529226--50529529	146	2.1	146	86	2	423	22	28	20	29	1.98
50540596--50540665	34	2.1	33	89	2	104	25	25	22	25	2.00
50543571--50543663	27	3.4	27	78	0	96	37	23	6	32	1.80
50543571--50543674	27	3.9	27	73	5	93	37	24	6	31	1.81
50543659--50543826	27	6.2	27	83	2	194	35	16	20	26	1.94
50544190--50544230	20	2.0	20	85	0	55	14	17	29	39	1.89
50544442--50544572	6	21.3	6	70	16	81	22	19	10	47	1.80
50544442--50544551	25	4.7	24	77	17	115	23	20	10	46	1.80
50544464--50544551	43	2.0	43	91	0	140	25	20	9	45	1.80
50546933--50547727	40	19.9	40	98	0	1477	29	22	27	20	1.98
50547899--50548010	56	2.0	56	96	0	206	25	8	30	35	1.86
50557976--50558039	29	2.2	29	78	10	69	42	4	21	31	1.74
50566234--50566356	46	2.7	45	82	6	160	29	29	16	25	1.96
50566234--50566403	46	3.7	43	78	12	146	27	29	15	27	1.96
50578335--50578659	48	6.8	48	93	0	542	34	6	26	32	1.82
50578703--50578805	37	2.8	37	93	0	179	23	19	33	24	1.97
50579688--50579744	28	2.0	28	100	0	114	42	0	26	31	1.56
50579798--50580035	119	2.0	119	99	0	467	32	16	21	29	1.95
50580902--50581279	40	9.4	40	90	0	576	23	21	29	25	1.99
50581455--50581505	25	2.0	25	81	7	59	33	13	31	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50585888--50585964	29	2.6	29	81	2	91	24	14	31	29	1.94
50585917--50586242	174	1.9	174	95	0	589	30	13	24	31	1.94
50589285--50589523	55	4.5	53	79	9	256	36	17	25	20	1.94
50589292--50589492	108	1.8	110	89	4	318	34	17	25	22	1.96
50589731--50589761	16	1.9	16	93	0	53	41	0	22	35	1.54
50603637--50603661	13	1.9	13	100	0	50	16	28	40	16	1.89
50615716--50615805	23	3.9	23	80	4	101	22	22	18	36	1.95
50616724--50616789	30	2.2	30	97	0	123	19	27	31	21	1.97
50619270--50619385	43	2.8	41	75	12	110	25	18	28	27	1.98
50635327--50635352	12	2.2	12	100	0	52	11	0	7	80	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290