genome.fa.s7.2.7.7.80.10.50.1000.266.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  266  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91902303--91902335	17	2.0	17	94	5	59	42	6	0	51	1.26
91903269--91903305	17	2.3	17	81	9	51	40	0	2	56	1.13
91903892--91903935	11	3.9	11	79	5	52	36	0	2	61	1.09
91903887--91903932	23	2.0	22	83	4	56	39	0	2	58	1.10
91914231--91914264	17	2.0	17	88	0	50	47	0	0	52	1.00
91919928--91920006	37	2.1	37	90	0	122	25	31	18	24	1.98
91920125--91920535	47	8.7	47	97	0	750	29	30	8	32	1.86
91940062--91940112	3	17.0	3	93	0	84	1	35	0	62	1.06
91943301--91943337	9	4.1	9	92	0	65	45	13	10	29	1.77
91943502--91943545	19	2.3	20	80	11	56	22	18	0	59	1.38
91947193--91947334	71	2.0	72	87	1	205	19	9	15	55	1.67
91950451--91950504	28	1.9	28	96	0	99	25	11	25	37	1.89
91953478--91953520	22	2.0	22	81	9	52	25	11	4	58	1.52
91954555--91954591	16	2.3	17	86	13	60	40	0	0	59	0.97
91954743--91954767	6	4.2	6	100	0	50	80	0	0	20	0.72
91957479--91957556	39	2.0	39	94	0	138	23	10	29	37	1.88
91960823--91960853	15	2.1	15	93	0	53	29	12	38	19	1.89
91960984--91961124	39	3.6	39	87	2	176	20	21	26	31	1.98
91966251--91966314	26	2.6	24	74	13	67	45	1	0	53	1.10
91966246--91966314	25	2.7	26	75	18	74	44	1	0	53	1.09
91969818--91969856	21	1.9	20	84	5	51	30	0	2	66	1.05
91970313--91970349	5	7.6	5	96	3	67	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91980704--91980736	16	2.1	17	88	11	52	39	0	6	54	1.25
91981339--91981389	22	2.3	22	82	0	57	45	19	5	29	1.74
91987335--91987439	27	3.9	27	85	9	126	34	20	25	19	1.96
91989061--91989168	26	4.2	26	93	0	189	36	24	7	32	1.83
91991829--91991881	20	2.6	21	82	8	74	35	5	9	49	1.59
92001173--92001322	76	2.0	76	93	2	257	29	32	16	22	1.95
92011851--92012112	39	6.7	40	88	7	337	24	27	22	25	2.00
92013190--92013216	14	1.9	14	100	0	54	0	7	3	88	0.61
92018842--92018915	37	2.0	37	82	15	91	41	24	8	25	1.82
92023803--92023948	31	4.7	31	97	0	267	28	26	17	28	1.97
92023972--92024105	42	3.2	42	98	0	259	33	20	14	31	1.93
92024253--92024322	25	2.8	25	95	0	122	25	22	25	25	2.00
92025249--92025356	27	3.9	27	78	13	103	31	8	18	41	1.80
92027302--92027386	27	3.1	27	86	0	107	38	8	25	27	1.84
92032690--92033372	340	2.0	340	98	0	1314	37	18	9	35	1.83
92033535--92033594	29	2.1	28	81	9	68	25	18	3	53	1.60
92035234--92035379	57	2.5	58	82	4	170	30	19	17	32	1.95
92037286--92037350	20	3.0	20	68	23	60	21	10	24	43	1.84
92052558--92052703	57	2.5	57	77	8	152	29	17	17	35	1.93
92057307--92057498	86	2.2	86	83	5	237	28	17	21	32	1.96
92057350--92057506	43	3.7	42	77	7	156	27	17	23	31	1.97
92060535--92060564	12	2.4	13	94	5	53	43	10	23	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92064343--92064372	2	15.0	2	92	0	51	50	3	0	46	1.18
92064823--92064976	28	5.5	28	94	1	247	27	12	27	33	1.92
92067013--92067044	13	2.3	15	89	10	50	21	34	6	37	1.79
92067880--92068059	89	2.0	88	95	1	324	37	25	12	25	1.91
92070916--92071020	42	2.6	40	73	11	97	37	25	14	22	1.92
92074120--92074163	21	2.0	22	82	4	54	40	25	0	34	1.56
92079666--92079729	31	2.1	31	93	0	110	23	17	17	42	1.89
92082011--92082108	49	2.0	49	97	0	187	34	21	6	37	1.78
92091874--92091914	20	2.0	22	85	9	59	80	4	7	7	1.02
92099649--92099684	2	18.0	2	94	0	63	52	0	47	0	1.00
92100059--92100100	18	2.4	17	81	18	50	59	19	0	21	1.38
92109913--92109968	25	2.2	25	81	6	69	51	1	5	41	1.35
92128031--92128055	10	2.5	10	100	0	50	60	0	0	40	0.97
92128871--92128912	16	2.5	17	84	7	59	54	0	4	40	1.21
92135620--92135720	50	2.0	50	98	0	193	25	10	29	33	1.90
92145236--92145276	20	2.0	20	100	0	82	19	19	29	31	1.96
92150853--92150936	26	3.2	26	81	3	107	39	22	19	19	1.93
92150946--92151042	20	4.8	20	76	0	104	36	25	24	13	1.92
92155002--92155059	24	2.4	24	79	0	62	48	15	13	22	1.80
92157360--92157417	24	2.4	24	79	0	62	48	15	13	22	1.80
92161372--92161409	3	12.7	3	100	0	76	31	0	0	68	0.90
92170989--92171063	39	1.9	39	100	0	150	33	10	25	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92176047--92176121	37	2.1	36	90	5	123	22	34	18	22	1.95
92176198--92176222	10	2.5	10	100	0	50	8	20	0	72	1.10
92176272--92176329	30	2.0	28	83	12	73	5	34	0	60	1.19
92186306--92186354	11	4.7	11	78	14	59	28	32	0	38	1.57
92186298--92186354	19	2.7	21	78	15	64	29	29	0	40	1.57
92186292--92186360	30	2.3	31	89	2	104	28	30	0	40	1.57
92188560--92188942	117	3.3	116	92	1	642	40	3	8	46	1.53
92191957--92192744	126	6.3	126	95	1	1287	27	21	17	33	1.96
92192846--92193023	97	1.8	99	86	7	265	41	14	1	43	1.52
92193020--92193061	16	2.6	17	85	11	61	54	16	0	28	1.42
92195201--92195242	21	2.0	22	90	4	68	30	4	2	61	1.29
92195766--92195804	20	2.0	20	85	10	53	33	7	0	58	1.26
92195948--92195999	26	2.0	26	84	0	68	28	7	1	61	1.34
92197440--92197485	19	2.4	19	85	7	58	19	17	13	50	1.78
92201963--92202090	64	2.0	64	90	0	202	34	17	13	35	1.88
92202159--92202892	87	8.5	87	79	7	695	35	20	22	21	1.96
92202159--92202897	173	4.3	174	79	7	679	35	21	22	21	1.96
92202585--92202873	44	6.7	44	78	6	243	36	21	22	19	1.95
92203008--92203228	45	5.0	44	66	13	114	26	19	27	26	1.99
92202852--92203306	132	3.4	132	91	0	687	27	20	24	26	1.99
92204622--92204663	21	2.0	22	90	4	68	30	4	2	61	1.29
92205155--92205193	20	2.0	20	85	10	53	33	7	0	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92205339--92205390	26	2.0	26	84	0	68	28	9	3	57	1.48
92205572--92205603	15	2.1	15	94	0	55	31	3	0	65	1.08
92208404--92208445	16	2.5	17	84	7	59	30	0	4	64	1.14
92209409--92209462	27	2.0	27	85	3	74	50	3	9	37	1.52
92211560--92211898	43	7.9	43	81	1	340	30	25	19	23	1.98
92212615--92212647	14	2.4	14	85	5	50	48	9	3	39	1.50
92216528--92216747	40	5.5	40	96	1	381	23	22	27	26	2.00
92221167--92221200	9	3.8	9	96	0	59	26	0	23	50	1.50
92221175--92221592	86	4.9	86	90	3	591	34	0	16	49	1.51
92221184--92221592	129	3.3	129	89	5	596	34	0	15	48	1.51
92221175--92221540	43	8.5	43	94	1	590	33	0	17	48	1.53
92221487--92221592	27	4.0	27	74	14	112	35	0	13	50	1.41
92221620--92221920	165	1.8	163	96	1	557	50	6	9	32	1.61
92221939--92221969	14	2.2	14	100	0	62	29	6	25	38	1.81
92222201--92222247	24	2.0	24	95	0	85	42	8	19	29	1.80
92223902--92224205	147	2.1	147	80	6	337	36	19	16	27	1.93
92224986--92225027	22	1.9	22	85	0	57	21	0	23	54	1.44
92224944--92225037	15	6.3	15	70	8	75	22	0	28	48	1.50
92225052--92225127	21	3.6	21	76	13	84	21	2	34	42	1.67
92225052--92225128	7	11.0	7	72	5	57	20	2	35	41	1.66
92225968--92226059	40	2.3	40	88	1	130	32	21	17	28	1.96
92226142--92226308	40	4.2	40	87	3	239	25	19	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92226386--92226504	40	2.7	45	70	15	122	26	19	21	32	1.97
92226416--92226524	40	2.7	40	79	0	119	25	18	20	35	1.95
92235455--92235541	43	2.0	43	100	0	174	36	9	9	44	1.68
92235906--92235956	26	2.0	26	88	3	77	62	3	0	33	1.13
92235906--92235967	25	2.5	25	85	10	83	62	4	0	32	1.16
92239092--92239126	14	2.6	13	86	8	52	62	2	0	34	1.10
92246020--92247160	396	2.9	396	87	2	1596	34	15	19	30	1.93
92252950--92253007	29	2.0	29	100	0	116	34	6	27	31	1.83
92256801--92256970	74	2.3	75	82	3	191	31	20	20	27	1.97
92256832--92256935	34	2.9	35	73	18	104	33	22	20	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290