genome.fa.s7.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  134  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45436074--45436174	30	3.6	29	80	10	113	67	1	0	30	1.02
45436116--45436186	30	2.4	30	92	0	115	64	4	0	30	1.12
45436118--45436185	9	6.8	10	79	14	54	64	4	0	30	1.13
45436232--45436311	21	3.9	21	88	4	110	58	0	1	40	1.06
45436270--45436367	33	2.9	33	92	4	151	57	1	1	40	1.12
45436233--45436372	54	2.6	53	80	14	160	57	0	1	40	1.13
45436232--45436372	21	6.5	21	74	20	105	57	0	1	40	1.13
45436463--45436572	45	2.4	45	89	4	157	70	1	17	10	1.25
45436868--45436896	11	2.7	11	94	5	51	6	13	0	79	0.93
45441221--45441250	6	5.0	6	100	0	60	66	0	0	33	0.92
45444423--45445181	381	2.0	379	98	0	1473	44	18	12	24	1.84
45449921--45449987	33	2.0	33	97	0	125	25	20	13	40	1.89
45452247--45452299	6	8.3	6	82	12	61	77	1	1	18	0.96
45452249--45452292	21	2.1	21	95	0	79	77	2	2	18	0.98
45453965--45453990	11	2.4	11	100	0	52	73	0	7	19	1.07
45453972--45454022	9	5.4	9	77	13	50	64	1	9	23	1.34
45454381--45454434	25	2.2	24	80	6	63	51	0	48	0	1.00
45458151--45458208	30	1.9	30	89	0	89	24	32	25	17	1.96
45477083--45477160	39	2.0	39	87	0	111	38	16	17	26	1.92
45478018--45478076	27	2.2	27	100	0	118	42	0	11	45	1.41
45478305--45478441	39	3.5	39	86	0	184	12	21	23	42	1.87
45479998--45480056	27	2.2	27	100	0	118	42	0	11	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45480285--45480421	39	3.5	39	86	0	184	12	21	23	42	1.87
45484561--45484597	15	2.5	15	95	0	65	10	29	18	40	1.85
45487819--45487844	2	13.0	2	100	0	52	50	0	0	50	1.00
45497419--45497446	11	2.5	11	100	0	56	28	39	7	25	1.82
45497535--45497650	58	2.0	58	96	0	214	35	18	12	34	1.87
45500421--45500447	13	2.1	13	100	0	54	48	14	14	22	1.81
45503458--45503641	40	4.7	40	81	11	195	26	21	26	25	2.00
45503510--45503674	79	2.1	79	83	8	203	27	20	26	25	1.99
45504037--45504153	60	2.0	60	100	0	234	25	29	21	23	1.99
45511373--45511634	39	6.7	40	87	7	337	25	22	27	24	2.00
45533560--45533618	30	2.0	30	86	0	82	35	11	23	28	1.91
45537184--45537233	25	2.0	25	96	0	91	20	10	24	46	1.81
45545052--45545081	12	2.5	12	94	0	51	73	3	6	16	1.18
45545661--45545699	18	2.1	19	85	4	53	7	23	2	66	1.30
45545827--45545883	5	11.0	5	75	20	55	3	17	1	77	1.00
45545827--45545883	16	3.7	14	82	15	60	3	17	1	77	1.00
45548204--45548281	36	2.1	37	86	6	106	25	29	19	25	1.98
45548400--45548888	47	10.4	47	97	0	870	29	28	8	33	1.87
45564981--45565027	20	2.4	19	86	6	67	42	10	4	42	1.59
45564987--45565027	20	2.0	20	95	0	73	46	12	4	36	1.63
45574805--45574843	21	1.9	20	89	5	60	28	2	23	46	1.65
45574814--45574856	21	2.1	21	83	12	54	27	4	20	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45578685--45578840	68	2.2	68	78	11	156	21	28	16	33	1.94
45599379--45599488	31	3.5	31	92	0	184	28	25	17	29	1.97
45599708--45599777	25	2.8	25	88	0	104	25	22	24	27	2.00
45600585--45600649	27	2.4	27	82	5	78	23	24	16	35	1.95
45600700--45600908	27	7.7	27	77	6	143	31	9	19	40	1.82
45600767--45600916	81	1.9	81	88	5	232	28	8	21	42	1.81
45600766--45600916	27	5.6	27	84	4	182	28	7	21	41	1.81
45600766--45600935	54	3.2	53	80	6	182	27	8	21	42	1.81
45600791--45600949	81	2.0	81	83	7	207	30	9	20	40	1.84
45600952--45601091	27	5.2	27	86	3	158	39	6	25	28	1.80
45600952--45601091	54	2.6	54	85	5	176	39	6	25	28	1.80
45602651--45602770	56	2.1	56	98	0	231	45	9	23	22	1.81
45604215--45604632	47	8.6	47	82	11	502	33	9	29	27	1.88
45604286--45604593	109	3.0	107	84	10	378	33	11	29	26	1.91
45604239--45604632	156	2.6	153	85	9	537	33	10	29	26	1.89
45604215--45604593	203	1.9	200	89	5	593	33	10	29	27	1.89
45605442--45605592	75	2.0	76	96	1	277	20	18	20	40	1.92
45623915--45624054	56	2.5	56	84	5	201	32	23	15	29	1.95
45631890--45631914	8	3.1	8	100	0	50	24	24	0	52	1.48
45642902--45642963	24	2.6	25	84	7	83	24	35	35	4	1.77
45643364--45643485	58	2.1	59	87	4	176	24	16	23	35	1.95
45644090--45644115	5	5.2	5	100	0	52	23	19	38	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45643849--45644325	192	2.5	192	88	4	688	30	23	24	21	1.99
45651119--45652054	43	22.0	43	74	9	409	19	32	30	17	1.95
45651179--45652015	127	6.6	127	79	7	682	19	32	31	17	1.95
45651270--45652056	170	4.6	171	80	4	754	19	32	31	17	1.94
45651275--45652085	212	3.8	212	78	5	584	19	31	31	17	1.95
45663333--45663426	43	2.2	43	84	1	118	23	37	26	12	1.91
45663312--45663760	42	10.6	42	80	4	451	19	32	31	16	1.94
45663312--45663772	126	3.6	126	84	3	511	19	32	30	16	1.94
45663401--45663772	84	4.4	85	88	3	497	19	32	32	16	1.94
45664102--45664331	116	2.0	114	82	3	282	22	31	26	19	1.98
45664245--45664338	42	2.2	43	90	1	145	18	32	29	19	1.95
45664584--45664649	24	2.7	25	81	6	82	21	31	36	10	1.87
45670998--45671067	33	2.1	33	100	0	140	27	24	14	34	1.94
45673741--45674751	43	23.7	43	73	7	498	19	28	31	21	1.97
45674141--45674586	128	3.5	128	74	7	366	19	29	31	19	1.96
45673933--45674464	171	3.1	168	75	8	538	19	28	31	20	1.97
45673942--45674631	85	8.1	85	73	8	368	19	28	31	20	1.97
45674313--45674627	128	2.5	126	73	6	283	20	30	30	19	1.97
45695341--45695378	20	1.9	20	88	0	58	36	31	13	18	1.89
45702807--45702908	41	2.4	42	85	4	134	28	19	24	27	1.99
45720293--45720452	85	1.9	85	88	0	239	23	36	21	18	1.95
45720315--45720555	128	1.9	127	81	4	297	23	34	24	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45720402--45720561	43	3.8	42	73	9	128	23	33	26	16	1.95
45720308--45720561	85	3.0	84	78	5	226	23	34	25	17	1.96
45720440--45720633	85	2.3	85	83	6	223	21	31	27	18	1.97
45721450--45721507	30	1.9	31	85	3	82	39	10	20	29	1.86
45724018--45724302	43	6.9	43	67	14	177	20	31	29	18	1.96
45724019--45724132	42	2.7	43	72	11	99	21	34	28	15	1.94
45724099--45724301	86	2.5	77	80	14	255	19	31	29	19	1.96
45724138--45724302	86	1.9	86	91	2	269	19	29	29	21	1.97
45727715--45728281	42	13.4	42	72	10	269	23	31	24	19	1.98
45727814--45727908	43	2.2	42	84	1	118	25	35	22	16	1.95
45728035--45728281	85	2.9	84	78	6	232	23	29	27	19	1.98
45728663--45728704	22	1.9	23	85	9	61	42	23	0	33	1.55
45728693--45728745	17	3.0	17	76	10	52	35	20	9	33	1.85
45731660--45731837	27	6.6	26	82	6	178	26	15	28	29	1.96
45731661--45731816	82	1.9	81	86	3	224	26	16	28	28	1.97
45731657--45731837	82	2.2	81	82	2	220	27	16	27	29	1.97
45731742--45731848	27	3.9	27	85	1	70	26	14	28	30	1.95
45739851--45740028	27	6.6	27	83	3	205	26	15	28	29	1.96
45739852--45740007	82	1.9	81	88	3	233	26	15	28	29	1.96
45739848--45740028	82	2.2	81	83	2	229	27	15	27	29	1.96
45743020--45743083	8	7.8	8	72	19	51	78	4	4	12	1.07
45743020--45743083	16	3.9	16	73	15	58	78	4	4	12	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45743049--45743110	8	7.5	8	77	15	56	72	0	9	17	1.10
45743097--45743197	12	8.7	12	69	15	54	67	0	6	25	1.16
45743049--45743163	8	13.8	8	70	20	51	70	0	6	22	1.11
45743101--45743143	23	2.0	21	90	9	68	72	0	4	23	1.04
45744096--45744131	16	2.2	16	100	0	72	30	11	30	27	1.91
45751082--45751109	13	2.2	13	100	0	56	35	25	7	32	1.83
45751440--45751469	14	2.1	14	93	0	51	16	13	23	46	1.82
45752648--45752681	15	2.3	15	94	0	59	11	44	0	44	1.40
45755583--45755627	23	2.0	23	91	4	74	46	17	4	31	1.68
45755609--45755661	17	3.0	17	76	10	52	35	20	9	33	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290