genome.fa.s7.2.7.7.80.10.50.1000.278.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  278  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96120686--96120833	44	3.4	44	79	1	145	32	12	16	39	1.85
96125065--96125152	6	14.3	6	75	17	83	47	15	18	18	1.83
96125065--96125152	19	4.8	18	75	18	83	47	15	18	18	1.83
96125074--96125152	31	2.5	31	93	0	131	48	15	18	17	1.82
96125079--96125125	25	1.9	24	95	4	85	44	17	21	17	1.86
96125482--96125533	27	1.9	27	84	7	70	36	17	23	23	1.95
96125941--96126260	27	11.9	27	88	0	442	23	21	21	33	1.97
96126319--96126631	27	11.6	26	81	6	302	31	7	19	40	1.81
96126373--96126647	54	5.1	53	84	7	340	33	7	18	40	1.80
96126371--96126647	108	2.6	107	89	2	412	33	7	19	39	1.80
96126803--96126850	17	2.8	17	96	0	87	14	31	29	25	1.95
96130550--96130583	16	2.1	16	94	0	59	29	8	17	44	1.79
96132529--96132871	40	8.6	40	91	2	467	24	20	28	27	1.99
96140632--96140803	79	2.2	79	84	3	220	25	21	27	25	1.99
96140632--96140801	40	4.3	39	87	5	207	25	21	27	25	1.99
96140659--96140836	79	2.2	80	80	3	191	25	21	28	24	1.99
96143050--96143165	39	3.0	38	89	5	169	29	29	18	22	1.98
96159781--96160007	49	4.6	49	83	4	258	26	17	25	30	1.97
96162324--96162478	49	3.2	49	76	14	142	56	5	7	30	1.49
96162647--96162686	17	2.3	18	86	4	55	62	0	5	32	1.17
96170986--96171099	57	2.0	57	94	0	201	32	24	16	26	1.96
96176746--96176788	21	2.0	21	81	0	50	23	41	2	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96178525--96178594	36	1.9	36	82	5	88	30	32	14	22	1.94
96185918--96186008	42	2.1	44	84	8	116	38	21	14	25	1.91
96188911--96188961	25	2.0	25	96	0	93	25	1	11	60	1.41
96195207--96195267	30	2.0	30	83	0	77	29	22	9	37	1.87
96199035--96199256	64	3.4	65	75	9	209	23	28	15	31	1.96
96199035--96199284	68	3.8	68	74	12	175	24	28	15	31	1.95
96211986--96212046	31	2.0	31	90	3	97	49	16	16	18	1.80
96212176--96212304	66	2.0	66	84	3	170	29	19	24	27	1.98
96213755--96213808	26	2.1	26	92	0	90	25	18	27	27	1.98
96216437--96216500	32	2.0	32	96	0	119	29	15	23	31	1.95
96225221--96225310	29	3.1	27	82	7	108	28	15	27	27	1.96
96227657--96227745	28	3.1	28	76	10	92	29	12	28	30	1.93
96233061--96233238	27	6.6	27	82	6	189	29	28	15	27	1.96
96233082--96233237	82	1.9	81	89	3	242	28	28	15	27	1.96
96233718--96233744	12	2.2	12	100	0	54	40	0	7	51	1.30
96235183--96235289	43	2.5	43	86	8	139	27	14	23	35	1.93
96248764--96248993	48	4.9	48	76	7	220	29	25	19	25	1.99
96261665--96261835	93	1.8	93	84	0	234	28	26	21	23	1.99
96265318--96265350	16	2.1	16	100	0	66	36	24	6	33	1.80
96271350--96271431	41	2.0	41	97	0	155	35	13	24	26	1.92
96271762--96271800	15	2.4	16	87	8	53	35	0	0	64	0.94
96272168--96272208	18	2.3	18	88	12	59	34	0	7	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96272168--96272206	16	2.2	17	86	13	53	35	0	7	56	1.28
96273199--96273242	16	2.5	17	82	14	54	47	0	15	36	1.46
96273824--96273860	9	4.1	9	85	0	56	29	8	13	48	1.71
96273911--96273945	18	1.9	18	94	0	61	37	22	14	25	1.92
96273966--96273993	9	3.1	9	100	0	56	14	10	10	64	1.50
96275039--96275244	47	4.4	47	73	8	127	27	21	29	21	1.99
96285678--96285723	21	2.3	20	85	10	60	47	0	0	52	1.00
96286143--96286232	44	2.1	44	95	2	164	56	0	23	20	1.42
96302125--96302294	46	3.7	46	80	10	211	22	20	27	29	1.98
96302119--96302289	93	1.8	93	93	0	297	22	20	28	29	1.98
96304640--96304699	30	2.0	30	93	6	104	31	15	30	23	1.95
96305351--96305405	26	2.1	26	100	0	110	30	10	27	30	1.91
96309645--96309813	46	3.7	46	74	10	164	23	18	26	31	1.98
96309638--96309808	93	1.8	93	87	0	252	22	19	26	30	1.98
96314807--96314853	20	2.4	20	82	10	53	46	17	2	34	1.59
96323908--96323970	20	3.2	20	74	17	69	39	19	9	31	1.83
96324131--96324235	24	4.2	25	78	9	92	35	19	22	22	1.96
96324956--96325137	6	29.8	6	70	17	117	46	12	19	21	1.83
96324956--96325076	25	4.7	24	77	18	118	47	12	19	21	1.82
96324979--96325137	86	1.8	86	93	0	273	45	12	19	22	1.84
96325255--96325312	27	2.2	27	87	3	82	36	24	24	15	1.94
96325639--96325721	27	3.1	26	87	5	112	37	21	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96325920--96326115	27	7.3	27	86	0	257	25	19	19	35	1.96
96326120--96326546	27	15.8	27	80	9	399	41	9	22	26	1.84
96326125--96326546	54	7.8	55	85	5	526	41	9	22	27	1.84
96326120--96326546	81	5.3	81	82	6	499	41	9	22	26	1.84
96328447--96328662	27	8.0	27	87	2	310	40	10	22	26	1.86
96335150--96335258	53	2.0	54	94	3	193	44	18	13	23	1.86
96336693--96336734	18	2.3	18	87	0	57	38	7	2	52	1.42
96339029--96339118	45	2.1	41	82	12	101	36	8	23	31	1.86
96349265--96349548	158	1.8	155	89	2	451	41	4	10	43	1.60
96349922--96350002	40	2.0	41	95	2	146	24	20	8	45	1.79
96350163--96350193	10	2.9	11	90	9	55	19	6	0	74	1.03
96353107--96353147	15	2.7	15	88	3	64	17	19	0	63	1.31
96353631--96353657	3	9.0	3	100	0	54	66	0	0	33	0.92
96357391--96357474	26	3.2	26	94	3	143	35	3	23	36	1.73
96358403--96358511	54	2.0	54	98	0	209	35	6	18	39	1.76
96365680--96365826	75	2.0	75	94	0	258	42	12	20	25	1.87
96368259--96368301	22	2.1	19	87	12	59	44	0	2	53	1.13
96368360--96368399	20	2.0	20	85	0	53	45	0	2	52	1.14
96371293--96371317	13	1.9	13	100	0	50	0	0	12	88	0.53
96371578--96371630	21	2.5	22	87	3	81	33	1	5	58	1.32
96383915--96384128	88	2.5	86	80	5	252	37	21	21	18	1.94
96384274--96384387	44	2.6	44	87	0	156	39	22	20	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96384318--96384428	43	2.5	44	82	7	129	37	22	18	20	1.94
96385278--96385425	28	5.3	28	96	0	278	29	11	25	34	1.91
96385933--96385958	5	5.2	5	100	0	52	0	19	0	80	0.71
96387829--96387874	22	2.1	21	84	4	56	17	4	19	58	1.55
96387860--96387943	23	3.7	23	88	0	132	20	7	28	44	1.78
96398440--96398649	40	5.3	39	89	4	242	25	21	27	25	1.99
96398387--96398649	120	2.2	120	82	4	309	25	21	27	25	1.99
96398388--96398684	80	3.7	80	81	6	230	26	21	27	24	1.99
96402752--96402872	43	2.8	43	85	5	138	26	15	26	31	1.96
96404362--96404970	48	12.7	48	94	1	976	30	27	6	35	1.81
96408431--96408578	40	3.7	40	82	3	163	25	12	26	35	1.92
96411550--96411677	48	2.7	46	84	8	177	27	29	17	25	1.98
96411553--96411709	48	3.3	46	84	6	172	25	30	18	25	1.98
96415493--96415544	16	3.3	16	86	2	70	50	23	19	7	1.73
96415494--96415545	8	6.6	8	76	10	54	50	21	21	7	1.73
96415763--96415877	28	4.1	28	78	6	106	27	17	30	24	1.97
96415768--96415877	57	1.9	57	84	0	148	28	17	30	24	1.97
96427708--96427792	27	3.2	26	86	5	98	36	22	22	18	1.95
96430553--96430666	28	4.0	28	83	6	140	29	15	26	28	1.96
96432856--96433028	27	6.4	27	86	0	220	34	20	21	23	1.97
96432857--96433010	81	1.9	81	90	0	245	35	21	20	22	1.96
96435325--96435509	40	4.7	40	81	5	207	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96435362--96435532	79	2.2	78	80	8	193	26	21	25	26	1.99
96443103--96443285	79	2.3	81	84	7	232	24	22	27	25	2.00
96443104--96443287	40	4.6	40	83	9	216	23	22	28	25	2.00
96443156--96443320	79	2.1	79	84	6	210	25	21	27	25	1.99
96444827--96444886	27	2.3	27	85	2	77	21	23	20	35	1.96
96451512--96451655	27	5.3	27	84	5	175	38	18	18	25	1.93
96451512--96451684	54	3.2	54	82	4	197	36	17	19	26	1.94
96451513--96451665	81	1.9	81	85	5	211	38	18	18	24	1.93
96452334--96452385	27	2.0	26	84	3	68	17	26	21	34	1.95
96452315--96453160	67	12.6	67	99	0	1683	17	29	22	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290