genome.fa.s7.2.7.7.80.10.50.1000.267.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  267  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92279747--92279823	31	2.5	31	85	6	95	46	9	11	32	1.72
92285695--92285741	23	2.0	23	95	0	85	51	25	4	19	1.65
92288650--92288712	31	2.0	31	93	0	108	25	28	11	34	1.90
92294899--92294928	15	2.0	15	100	0	60	26	0	0	73	0.84
92294901--92294934	15	2.3	15	89	0	50	29	0	0	70	0.87
92301729--92301785	11	4.9	11	73	12	51	31	0	5	63	1.17
92303626--92303697	21	3.2	21	66	27	58	40	11	23	25	1.87
92303625--92303852	46	5.0	46	90	2	314	41	13	22	21	1.88
92310148--92310197	24	2.0	26	84	7	68	34	18	20	28	1.95
92310227--92310379	65	2.4	65	84	0	198	33	21	21	23	1.97
92316974--92317126	65	2.4	65	84	0	207	31	16	22	28	1.96
92320085--92320156	36	2.0	36	91	0	117	22	26	8	43	1.81
92321803--92321924	48	2.5	48	85	2	147	27	20	27	25	1.99
92328842--92329013	40	4.3	40	88	2	222	25	27	21	25	1.99
92332891--92333072	40	4.6	39	85	5	222	34	18	29	18	1.95
92332882--92333072	80	2.4	80	85	1	258	35	17	28	18	1.94
92333533--92333560	14	2.0	14	100	0	56	42	28	0	28	1.56
92336970--92337026	25	2.3	25	100	0	114	56	24	7	12	1.61
92344528--92344554	13	2.1	13	100	0	54	70	7	14	7	1.32
92345245--92345280	18	2.0	18	100	0	72	61	0	0	38	0.96
92347725--92347785	30	2.0	30	87	0	86	40	8	22	27	1.82
92349980--92350040	30	2.0	30	83	0	77	40	6	22	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92350620--92350680	30	2.0	30	83	0	77	40	6	22	29	1.79
92349512--92351401	640	3.0	640	97	0	3530	35	11	20	32	1.89
92351980--92352152	68	2.6	66	76	9	165	32	15	26	26	1.95
92358695--92358816	43	2.8	43	85	2	147	26	17	25	31	1.97
92360647--92360885	118	2.0	118	97	0	451	31	17	19	31	1.95
92369170--92369414	40	6.2	40	89	6	322	23	22	28	25	1.99
92376806--92376831	13	2.0	13	100	0	52	30	0	7	61	1.24
92378207--92378332	40	3.2	40	88	3	184	24	21	26	26	1.99
92386509--92386771	40	6.6	39	86	4	278	25	27	21	25	1.99
92386509--92386771	120	2.2	119	82	4	307	25	27	21	25	1.99
92386703--92386780	40	1.9	41	82	10	97	26	28	20	24	1.99
92393255--92393461	102	2.0	102	98	0	396	24	21	14	39	1.91
92394595--92394766	40	4.3	40	87	2	213	26	27	20	25	1.99
92394595--92394819	80	2.8	79	80	7	231	26	27	20	25	1.99
92394751--92394828	40	1.9	41	82	10	97	26	28	20	24	1.99
92409050--92409075	13	2.0	13	100	0	52	30	0	7	61	1.24
92410261--92410588	166	2.0	166	100	0	656	29	11	23	35	1.91
92410535--92410620	40	2.2	40	89	6	131	23	23	27	25	2.00
92412630--92412794	46	3.5	44	83	9	154	23	30	18	27	1.97
92412720--92412891	94	1.8	92	84	7	231	21	27	20	30	1.98
92412630--92412888	140	1.8	140	84	5	353	22	28	19	29	1.98
92418509--92418620	40	2.8	40	94	0	188	22	23	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92418509--92418644	40	3.5	40	87	6	170	25	22	23	28	1.99
92430063--92430099	12	2.9	13	88	8	58	75	0	0	24	0.80
92430064--92430099	17	2.1	18	89	5	56	77	0	0	22	0.76
92432011--92432044	18	1.9	18	88	5	52	55	8	11	23	1.63
92432764--92432815	20	2.5	20	81	9	61	69	1	5	23	1.20
92434415--92434474	29	2.1	29	100	0	120	25	13	21	40	1.89
92434634--92434696	29	2.2	29	97	0	117	50	7	9	31	1.64
92435878--92435931	26	2.1	26	100	0	108	42	20	18	18	1.89
92438256--92438303	25	2.0	24	87	4	69	25	25	16	33	1.96
92439433--92439568	56	2.4	56	82	1	146	27	25	24	23	2.00
92441296--92441356	27	2.3	27	82	5	70	36	16	27	19	1.93
92444196--92444422	48	4.8	48	75	9	225	27	23	22	26	1.99
92452274--92452336	30	2.1	30	100	0	126	39	7	12	39	1.73
92453520--92453571	10	5.1	10	84	11	52	34	0	5	59	1.21
92453519--92453562	22	2.0	22	90	0	70	38	0	4	56	1.20
92463643--92463946	151	2.0	151	100	0	608	35	23	8	32	1.85
92468413--92468438	6	4.3	6	100	0	52	30	0	0	69	0.89
92469953--92470122	46	3.7	46	89	0	250	24	21	25	28	1.99
92469953--92470122	92	1.8	92	92	0	286	24	21	25	28	1.99
92478113--92478295	48	3.9	48	73	9	162	28	26	19	25	1.99
92478540--92478599	30	2.0	30	100	0	120	36	3	23	36	1.71
92481169--92481208	4	10.0	4	88	0	62	50	0	22	27	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92488698--92488722	13	1.9	13	100	0	50	16	36	40	8	1.77
92499152--92499268	43	2.7	43	90	1	173	28	17	26	27	1.98
92499153--92499292	43	3.3	43	84	5	124	30	18	23	27	1.98
92499151--92499307	86	1.8	84	81	8	192	28	17	24	28	1.98
92506369--92506420	25	2.1	25	89	7	79	34	11	11	42	1.77
92509577--92509639	24	2.6	24	82	5	74	20	14	30	34	1.92
92511485--92511655	43	4.0	43	77	9	188	31	22	14	30	1.94
92513405--92514316	46	19.8	46	96	2	1652	30	28	19	21	1.98
92518306--92518393	42	2.1	42	95	0	158	26	23	15	34	1.95
92520766--92521572	46	17.5	46	99	0	1605	30	26	17	25	1.97
92526590--92526853	85	3.1	85	97	0	501	37	9	26	26	1.87
92529089--92529152	26	2.4	26	94	2	110	37	0	28	34	1.57
92529053--92529192	75	1.9	73	94	2	244	35	5	27	31	1.80
92529116--92530021	49	18.8	49	93	3	1468	32	8	28	30	1.86
92530139--92530276	37	3.7	37	95	1	233	25	18	31	24	1.98
92540271--92540305	16	2.2	16	100	0	70	37	0	5	57	1.23
92542602--92542776	46	3.8	46	78	13	205	30	29	20	20	1.97
92542609--92542780	93	1.8	93	94	0	308	29	29	20	20	1.98
92550183--92550354	93	1.8	93	96	0	317	27	29	21	20	1.98
92550176--92550351	46	3.8	46	79	12	216	28	29	21	20	1.98
92559025--92559065	21	2.0	21	85	4	57	68	7	4	19	1.32
92562359--92562411	27	2.0	27	84	0	70	37	20	24	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92578870--92579063	98	2.0	98	93	0	334	36	17	16	30	1.92
92581478--92581582	49	2.1	49	83	0	138	31	17	27	23	1.97
92582834--92583022	50	3.8	49	84	2	234	28	25	18	26	1.98
92582847--92583030	101	1.8	99	84	2	251	28	26	17	26	1.98
92593188--92593229	22	2.0	21	90	4	66	26	26	38	9	1.87
92596323--92596440	49	2.4	49	85	2	148	30	20	27	22	1.98
92606577--92606603	8	3.4	8	100	0	54	37	11	25	25	1.89
92606577--92606610	16	2.1	16	88	0	50	41	8	23	26	1.83
92621071--92621216	72	2.0	72	95	0	265	38	19	7	34	1.80
92628004--92628033	10	3.0	10	100	0	60	30	30	0	40	1.57
92634873--92634927	27	2.0	27	85	0	74	40	7	14	38	1.74
92635163--92635296	49	2.7	49	89	0	196	27	16	29	26	1.97
92642682--92642714	7	4.4	8	92	7	52	69	0	0	30	0.88
92645308--92645490	40	4.6	39	81	6	170	24	20	27	26	1.99
92645344--92645525	79	2.3	80	79	3	190	26	20	27	25	1.99
92651941--92652150	40	5.3	40	91	1	271	25	20	27	26	1.99
92651888--92652150	120	2.2	120	81	4	300	25	20	27	26	1.99
92652623--92652823	100	2.0	101	98	0	386	28	11	25	34	1.91
92656194--92656452	131	1.9	134	83	4	337	26	16	12	44	1.83
92656611--92656645	17	2.1	17	100	0	70	28	0	17	54	1.43
92669124--92669311	49	3.8	49	75	10	161	26	25	19	29	1.98
92683076--92683247	79	2.2	79	82	3	211	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92683076--92683245	40	4.3	39	85	5	198	25	21	27	25	1.99
92700332--92700367	18	2.0	18	94	0	63	50	19	5	25	1.69
92700510--92700689	39	4.6	39	88	3	229	33	26	19	20	1.97
92700630--92700795	39	4.2	39	87	2	226	31	28	18	21	1.97
92704896--92705117	40	5.6	40	88	1	304	22	21	26	30	1.99
92711110--92711311	39	5.1	40	89	3	259	30	26	22	20	1.98
92711242--92711368	39	3.2	39	88	3	166	30	27	21	20	1.98
92711112--92711340	78	2.9	79	81	5	275	31	27	20	20	1.98
92716904--92716941	19	2.0	20	85	15	53	39	23	0	36	1.55
92717170--92717340	93	1.8	93	92	0	288	30	29	19	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290