genome.fa.s7.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  91  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30609025--30609200	46	3.8	46	80	12	225	28	28	21	21	1.98
30611089--30611132	22	2.0	22	95	0	79	31	11	22	34	1.90
30630118--30630155	20	2.1	19	85	14	53	23	26	10	39	1.87
30644454--30644688	27	8.7	27	80	10	182	40	19	8	31	1.81
30644438--30644657	54	4.1	55	77	11	224	42	19	8	30	1.80
30644437--30644718	81	3.5	80	81	5	327	41	19	8	30	1.82
30644454--30644717	54	4.9	54	76	9	218	40	18	8	31	1.81
30644437--30644704	27	10.0	28	79	9	179	40	18	9	31	1.82
30645143--30645231	27	3.3	27	75	9	83	22	20	17	39	1.92
30649217--30649304	45	2.0	45	90	0	140	37	26	14	21	1.92
30656805--30657004	56	3.6	56	92	1	303	25	14	24	36	1.93
30656795--30657035	112	2.2	112	82	6	292	24	14	25	34	1.94
30660302--30660394	38	2.4	39	91	3	145	17	30	20	32	1.95
30661494--30661538	21	2.2	20	84	11	56	26	4	8	60	1.46
30664974--30665128	42	3.7	42	82	1	193	30	23	16	29	1.96
30665286--30665335	23	2.1	25	82	14	61	46	10	4	40	1.56
30668198--30668247	24	2.1	24	81	7	57	54	6	2	38	1.37
30669193--30669299	19	5.8	18	70	18	60	51	3	2	42	1.34
30671201--30671286	23	3.8	23	77	11	88	29	19	15	36	1.92
30679358--30679435	29	2.7	28	84	11	104	25	15	30	28	1.96
30679388--30679715	174	1.9	174	97	0	620	29	14	24	30	1.95
30687361--30687531	93	1.8	93	96	0	315	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30687356--30687528	46	3.7	46	80	13	219	28	28	21	21	1.98
30687951--30688010	30	2.0	30	90	0	93	30	25	8	36	1.85
30690744--30690879	23	5.8	23	71	12	75	24	19	19	36	1.95
30693450--30693565	39	2.9	39	82	6	142	33	27	10	28	1.90
30696433--30696602	49	3.5	48	75	2	162	23	25	20	31	1.98
30696379--30696651	98	2.8	97	80	7	254	23	24	19	32	1.97
30701071--30701183	37	3.1	37	76	13	99	40	2	4	52	1.36
30703056--30703114	31	1.9	31	89	0	91	37	27	11	23	1.90
30704202--30704443	133	1.8	133	87	0	358	39	13	20	26	1.90
30706143--30706198	22	2.5	22	86	11	71	35	3	0	60	1.14
30706167--30706258	9	11.8	8	76	16	52	34	2	0	63	1.07
30706203--30706258	8	6.5	8	81	10	58	33	0	0	66	0.92
30706166--30706258	19	4.9	18	71	19	57	34	2	0	63	1.07
30706153--30706284	57	2.3	57	80	13	146	32	3	0	64	1.09
30706170--30706265	14	6.9	15	70	17	64	35	2	0	62	1.07
30706208--30706270	25	2.5	24	82	17	74	33	0	0	66	0.92
30706161--30706272	14	7.6	16	64	27	61	34	1	0	63	1.05
30708901--30708970	25	2.8	26	80	10	83	24	21	25	28	1.99
30713028--30713060	16	2.1	16	100	0	66	39	18	12	30	1.87
30716622--30716705	25	3.4	25	72	0	69	29	22	19	28	1.98
30738353--30738397	18	2.6	18	86	6	58	64	0	0	35	0.94
30753458--30753796	47	7.7	47	76	14	355	29	15	23	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30753501--30753749	80	3.0	84	89	5	389	28	14	24	31	1.95
30753556--30753824	38	6.5	40	79	13	212	28	14	25	30	1.95
30753424--30753826	212	1.9	213	90	0	637	29	14	24	31	1.95
30763850--30763894	8	5.4	8	82	10	54	64	0	0	35	0.94
30763848--30763894	18	2.8	16	81	12	58	63	0	0	36	0.94
30769883--30769941	24	2.5	24	94	2	102	52	8	0	38	1.32
30776337--30776715	48	7.9	48	86	0	497	26	17	29	26	1.98
30776337--30776717	96	4.0	96	91	0	573	26	17	28	26	1.98
30780305--30780409	50	2.1	50	82	3	122	28	7	20	42	1.80
30780710--30780750	21	2.0	21	100	0	82	39	2	14	43	1.59
30781396--30781526	39	3.4	39	88	1	192	24	22	29	23	1.99
30781398--30781554	78	2.0	78	82	2	190	23	23	28	24	1.99
30788254--30788294	21	2.0	21	100	0	82	39	2	14	43	1.59
30788940--30789057	39	3.0	39	89	0	191	24	23	28	22	1.99
30788939--30789089	78	1.9	78	84	5	198	26	24	26	22	2.00
30790690--30790731	12	3.5	12	86	0	57	14	14	35	35	1.86
30794724--30795153	48	9.0	48	83	0	536	26	17	28	27	1.97
30794724--30795147	96	4.4	96	95	0	659	27	16	28	27	1.97
30794724--30795153	144	3.0	144	84	1	601	26	17	28	27	1.97
30802505--30802663	43	3.7	43	74	10	146	24	18	24	32	1.97
30802847--30802902	20	2.8	20	78	8	51	39	7	23	30	1.81
30804406--30804492	44	2.0	44	95	0	156	33	13	11	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30806463--30806498	6	6.3	6	93	6	58	83	0	0	16	0.65
30811660--30811693	17	2.0	17	94	0	59	35	20	20	23	1.96
30812867--30812904	18	2.2	18	95	4	69	15	50	23	10	1.75
30814771--30814805	7	5.0	7	100	0	70	0	71	0	28	0.86
30815228--30815272	22	2.0	22	91	0	72	48	15	2	33	1.57
30819006--30819050	22	2.0	22	91	0	72	48	15	2	33	1.57
30824476--30824536	29	2.0	30	84	6	79	39	1	8	50	1.42
30830735--30830775	3	13.7	3	89	0	64	60	0	2	36	1.10
30831804--30831828	6	4.2	6	100	0	50	32	0	16	52	1.44
30832644--30832738	47	2.0	47	95	0	172	28	31	13	26	1.94
30849969--30849999	3	10.3	3	100	0	62	32	0	0	67	0.91
30851513--30851574	25	2.5	26	80	14	69	20	1	8	69	1.23
30853464--30853490	13	2.1	13	100	0	54	44	14	14	25	1.84
30855677--30856001	161	2.0	161	96	0	605	44	7	22	25	1.78
30859228--30859294	34	2.0	34	85	5	91	38	5	16	38	1.73
30859707--30859731	13	1.9	13	100	0	50	16	28	32	24	1.96
30862150--30862183	6	5.3	6	86	13	50	0	20	0	79	0.73
30862143--30862183	12	3.2	13	86	10	57	0	24	0	75	0.80
30862236--30862306	28	2.5	29	81	6	74	26	4	1	67	1.17
30862273--30862320	21	2.3	21	82	10	55	41	2	0	56	1.11
30868019--30868052	17	2.0	17	88	0	50	14	26	32	26	1.95
30869952--30870039	46	1.9	46	85	0	113	28	30	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30870457--30870516	30	2.0	30	90	0	93	30	25	8	36	1.85
30877456--30877626	93	1.8	93	96	0	315	28	29	21	21	1.98
30877451--30877623	46	3.7	46	80	13	219	28	28	21	21	1.98
30878046--30878105	30	2.0	30	90	0	93	30	25	8	36	1.85
30879970--30880006	16	2.2	17	86	13	51	2	29	0	67	1.04
30880065--30880113	24	1.9	26	84	12	66	22	6	0	71	1.08
30887428--30887461	16	2.0	18	88	11	54	61	0	0	38	0.96
30887741--30887773	7	4.7	7	89	10	50	0	12	0	87	0.53
30887774--30887818	21	2.1	22	83	4	56	62	0	4	33	1.15
30888301--30888343	22	2.0	22	90	0	68	20	9	6	62	1.48
30891030--30891059	11	2.6	11	94	5	51	56	6	0	36	1.26
30896356--30896468	55	2.1	55	93	0	190	36	19	21	23	1.95
30897205--30897232	6	4.7	6	100	0	56	64	17	17	0	1.30
30897405--30897436	16	2.0	16	100	0	64	12	12	31	43	1.80
30904647--30904746	27	3.6	27	86	8	112	31	29	13	27	1.93
30904649--30904746	28	3.5	27	88	5	133	31	28	13	26	1.94
30913303--30913520	47	4.6	47	79	11	218	28	20	27	23	1.99
30913303--30913524	97	2.4	92	84	7	279	28	20	27	22	1.99
30916124--30916148	2	12.5	2	100	0	50	48	52	0	0	1.00
30917979--30918196	47	4.6	47	79	11	218	28	20	27	23	1.99
30917979--30918200	97	2.4	92	84	7	279	28	20	27	22	1.99
30920823--30920894	2	36.0	2	85	0	63	11	51	0	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30923016--30923155	70	2.0	70	94	0	244	24	14	22	39	1.91
30923991--30924057	21	3.3	21	83	4	75	17	19	14	47	1.82
30924003--30924068	19	3.4	19	85	4	78	15	21	15	48	1.81
30927409--30927465	25	2.3	25	82	11	64	29	14	17	38	1.89
30932597--30932690	40	2.3	41	85	7	122	28	29	15	25	1.96
30936384--30936444	25	2.4	25	91	0	95	24	24	21	29	1.99
30940004--30940142	46	3.0	46	93	0	224	20	24	28	25	1.99
30956428--30956683	126	2.0	126	95	0	458	30	24	14	30	1.95
30961213--30961243	16	1.9	16	93	0	53	35	22	0	41	1.54
30961210--30961249	20	2.0	20	85	0	53	37	22	0	40	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290