genome.fa.s7.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  140  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47573972--47574111	27	5.2	27	82	4	167	21	18	20	40	1.92
47573972--47574111	53	2.6	54	84	4	176	21	18	20	40	1.92
47576815--47577077	40	6.6	40	88	3	325	24	20	27	26	1.99
47576854--47577112	80	3.3	80	85	3	256	25	20	27	25	1.99
47584765--47585107	40	8.6	40	91	2	485	24	20	27	27	1.99
47589166--47589212	22	2.1	22	84	0	58	25	19	14	40	1.90
47594545--47594571	14	1.9	14	100	0	54	88	3	7	0	0.61
47595649--47595910	39	6.7	40	87	7	337	25	22	27	24	2.00
47598624--47598701	24	3.0	25	82	14	104	37	14	23	25	1.92
47598624--47598713	28	3.4	28	87	7	125	35	13	24	26	1.92
47598781--47598864	37	2.3	37	93	0	141	29	10	22	36	1.88
47598818--47599023	51	4.0	51	94	1	342	30	13	24	31	1.94
47598743--47598915	88	2.0	88	94	0	301	30	12	24	32	1.92
47613258--47613428	93	1.8	93	91	0	279	28	28	21	22	1.99
47613249--47613424	46	3.8	46	75	7	185	28	27	21	22	1.99
47613301--47613443	46	3.1	46	67	17	107	30	27	19	22	1.98
47629346--47629380	17	2.0	17	88	5	52	11	25	42	20	1.85
47630610--47630682	34	2.2	33	85	4	94	19	23	16	41	1.90
47637931--47638004	34	2.2	33	81	6	87	17	24	18	39	1.92
47642796--47642930	21	6.5	21	66	3	67	42	15	22	19	1.88
47649623--47649794	27	6.4	27	89	0	254	31	22	6	38	1.81
47649464--47649912	27	16.6	27	78	4	251	36	22	8	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47649897--47650040	27	5.3	27	86	0	198	36	18	18	25	1.94
47649816--47650038	54	4.1	53	78	6	191	38	19	14	26	1.91
47650471--47650514	19	2.3	19	84	0	52	20	25	13	40	1.89
47650500--47650552	6	8.8	6	87	8	81	18	16	15	49	1.80
47654695--47654744	25	2.0	25	100	0	100	28	16	16	40	1.89
47661637--47661760	42	3.0	42	79	2	133	42	16	22	17	1.89
47661637--47661699	21	3.0	21	73	0	54	39	19	25	15	1.91
47663604--47663695	42	2.2	42	90	0	139	33	22	14	29	1.93
47663850--47664014	26	6.4	26	90	0	242	28	22	21	27	1.99
47663850--47664014	78	2.1	77	93	1	276	28	22	21	27	1.99
47664817--47664899	27	3.1	27	87	5	98	21	24	21	32	1.98
47664838--47664899	27	2.3	27	97	0	115	19	27	22	30	1.98
47664951--47665003	27	2.0	27	84	0	70	37	15	13	33	1.86
47664961--47665295	27	12.4	27	76	6	151	31	8	19	39	1.83
47664940--47665295	54	6.6	53	74	8	247	31	8	19	39	1.83
47665060--47665254	52	3.7	52	80	7	171	30	9	20	40	1.84
47665048--47665229	79	2.3	80	91	2	287	30	9	20	39	1.84
47665272--47665403	27	4.9	27	91	0	192	41	7	20	30	1.80
47665209--47665403	54	3.6	54	83	1	149	36	7	21	34	1.81
47665380--47665442	27	2.3	27	83	0	72	28	6	20	44	1.76
47666541--47666584	18	2.4	18	96	3	79	56	31	2	9	1.43
47670722--47670842	43	2.9	42	79	7	136	26	23	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47677186--47677256	24	3.0	24	91	0	115	23	36	1	38	1.64
47696140--47696252	27	4.2	26	84	8	136	37	23	23	16	1.94
47696140--47696252	55	2.1	54	86	5	156	37	23	23	16	1.94
47699482--47699542	30	2.0	30	83	0	77	31	22	8	37	1.84
47702117--47702238	43	2.9	42	74	7	120	29	22	15	32	1.95
47709188--47709288	35	2.9	35	77	0	103	26	10	18	43	1.83
47712041--47712093	27	1.9	27	84	3	70	20	28	22	28	1.99
47712062--47712165	34	3.1	34	81	4	122	26	23	23	26	2.00
47724654--47724682	12	2.4	12	100	0	58	6	17	41	34	1.76
47725579--47725662	20	4.3	20	76	7	75	42	19	7	30	1.78
47727924--47728009	45	1.9	44	88	2	127	24	13	24	37	1.92
47734053--47734110	16	3.4	16	86	9	71	67	0	8	24	1.18
47734102--47734140	14	2.6	15	84	8	53	66	0	5	28	1.12
47740143--47740308	43	3.9	43	87	0	226	26	20	30	22	1.98
47748795--47749015	25	8.9	25	73	8	139	19	23	20	36	1.95
47748871--47748965	48	1.9	50	83	8	124	15	20	23	41	1.90
47748871--47748965	49	1.9	49	83	8	122	15	20	23	41	1.90
47748960--47749037	25	3.1	24	81	5	75	23	24	21	30	1.99
47751934--47752037	52	2.0	52	96	0	190	21	17	30	30	1.96
47755970--47755998	13	2.1	14	93	6	51	27	0	13	58	1.36
47756667--47756708	19	2.2	19	95	0	75	23	9	14	52	1.71
47757964--47757992	13	2.1	14	93	6	51	27	0	13	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47758661--47758702	19	2.2	19	95	0	75	23	9	14	52	1.71
47768858--47768971	38	3.0	38	100	0	228	31	23	13	31	1.93
47773237--47773284	24	1.9	24	87	8	69	41	2	0	56	1.11
47773248--47773296	24	2.0	25	84	11	66	40	0	0	59	0.98
47773263--47773316	18	2.9	18	83	2	72	38	1	0	59	1.08
47773398--47773533	20	6.7	21	70	16	74	33	1	0	63	1.08
47773398--47773533	43	3.3	40	76	12	118	33	1	0	63	1.08
47773388--47773533	10	14.8	9	72	19	64	33	1	0	64	1.07
47773464--47773533	18	3.7	18	75	19	63	32	1	0	65	1.01
47773483--47773569	30	3.0	28	82	11	88	27	3	2	66	1.20
47773512--47773577	30	2.2	30	84	10	82	25	4	3	66	1.25
47774197--47774222	6	4.3	6	100	0	52	65	0	0	34	0.93
47781284--47781328	22	2.0	22	91	0	72	48	15	2	33	1.57
47785118--47785162	22	2.0	22	91	0	72	48	15	2	33	1.57
47785905--47785960	22	2.5	22	80	11	60	26	10	10	51	1.69
47787742--47787803	25	2.4	26	89	5	99	37	3	4	54	1.38
47790912--47790971	20	3.0	20	78	9	68	35	0	3	61	1.12
47790947--47790989	22	2.0	21	82	13	52	37	2	4	55	1.33
47795380--47795418	18	2.2	18	85	0	51	61	2	23	12	1.43
47799350--47799564	40	5.4	40	83	6	242	24	26	22	25	2.00
47806645--47807363	358	2.0	357	98	0	1402	34	22	11	31	1.90
47820905--47822127	44	28.2	44	86	3	1651	29	17	31	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47820912--47822127	216	5.6	217	90	2	1679	29	17	31	21	1.96
47823631--47823687	24	2.4	24	81	0	69	26	3	8	61	1.42
47825499--47825523	8	3.1	8	100	0	50	36	0	0	64	0.94
47829459--47829499	19	2.2	19	90	0	64	51	0	9	39	1.35
47846878--47846948	35	2.0	35	91	0	115	36	11	25	26	1.90
47854350--47854407	29	2.1	28	87	6	82	43	6	25	24	1.79
47854747--47854917	43	4.0	43	76	6	150	24	14	26	34	1.94
47865512--47865661	41	3.6	41	75	10	144	22	20	28	28	1.99
47865513--47865624	42	2.7	41	81	9	113	25	21	25	27	1.99
47871512--47871734	39	5.7	40	84	8	257	26	22	26	24	2.00
47871512--47871734	79	2.8	81	83	9	273	26	22	26	24	2.00
47871512--47871767	79	3.3	79	81	10	199	26	21	26	24	1.99
47877049--47877198	41	3.6	41	74	10	135	23	20	27	28	1.99
47883556--47883659	33	3.2	33	83	2	111	47	16	22	14	1.82
47885994--47886023	15	2.0	15	93	0	51	43	13	20	23	1.86
47886295--47886387	27	3.4	27	78	7	116	21	29	6	43	1.77
47886295--47886408	56	2.0	55	86	9	160	21	26	7	44	1.79
47889062--47889171	55	2.0	55	98	0	211	33	12	28	25	1.92
47896449--47896509	30	2.0	30	83	0	77	31	22	8	37	1.84
47904461--47904501	22	1.9	21	90	5	64	12	39	26	21	1.89
47909342--47909687	80	4.3	80	91	3	504	28	21	25	25	1.99
47909342--47909694	120	2.9	120	89	4	509	28	20	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47909381--47909694	40	7.8	40	94	1	499	29	20	24	25	1.99
47916257--47916298	17	2.3	19	76	12	52	19	0	47	33	1.49
47917084--47917120	18	2.1	18	94	0	65	18	35	35	10	1.86
47922956--47922992	17	2.1	18	90	5	58	21	0	40	37	1.54
47931376--47931436	21	2.9	21	87	0	86	16	22	14	45	1.84
47932243--47932298	26	2.2	26	86	0	76	14	33	28	23	1.94
47932530--47932560	16	1.9	16	93	0	53	22	25	25	25	2.00
47933030--47933095	29	2.3	29	89	0	96	36	22	15	25	1.93
47933058--47933180	58	2.1	58	83	3	158	37	21	15	25	1.93
47933085--47933180	29	3.3	29	94	0	165	35	22	16	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290