genome.fa.s7.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  124  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42156705--42156765	32	1.9	32	96	0	113	26	22	9	40	1.85
42157576--42157627	27	1.9	27	84	0	68	21	30	15	32	1.94
42157586--42157688	54	1.9	54	87	0	152	20	26	13	39	1.89
42162188--42162366	96	1.8	96	84	5	243	25	29	18	27	1.98
42164818--42164998	49	3.7	49	83	4	247	28	25	19	26	1.99
42164805--42164996	99	1.9	100	93	1	332	28	24	19	27	1.99
42169978--42170016	20	2.1	18	85	9	51	43	0	0	56	0.99
42170693--42170728	16	2.2	16	90	0	54	33	0	11	55	1.35
42170722--42170775	22	2.3	24	78	9	58	37	1	7	53	1.40
42172270--42172535	94	2.9	94	83	5	326	27	20	27	24	1.99
42172270--42172634	47	7.8	44	71	13	180	28	20	27	23	1.99
42177206--42177331	21	6.1	21	80	5	132	45	12	23	18	1.84
42178498--42178522	13	1.9	13	100	0	50	60	0	0	40	0.97
42189686--42189753	31	2.2	31	94	0	118	44	5	13	36	1.68
42189693--42189754	31	2.0	31	100	0	124	41	6	12	38	1.69
42192080--42192163	28	3.2	28	65	25	83	23	16	29	29	1.96
42192032--42192220	50	3.8	49	83	2	216	25	17	27	29	1.98
42194469--42194510	18	2.3	18	87	4	57	21	11	11	54	1.68
42195922--42195984	27	2.3	27	81	10	76	53	3	0	42	1.16
42198576--42198639	29	2.2	29	97	0	119	25	31	23	20	1.98
42208541--42209469	85	10.9	85	100	0	1858	29	16	9	44	1.79
42211324--42211420	48	2.0	48	100	0	194	35	24	13	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42211328--42211405	25	3.2	25	61	31	60	35	21	12	29	1.91
42214176--42214386	69	3.2	68	74	10	211	39	15	23	21	1.92
42214945--42215009	34	1.9	34	87	0	94	44	10	26	18	1.82
42216330--42216363	17	2.0	17	94	0	59	23	14	5	55	1.61
42227055--42227121	33	2.0	34	97	2	127	20	2	23	52	1.61
42228036--42228149	40	2.8	40	93	0	183	22	18	26	32	1.97
42228157--42228210	28	1.9	28	84	0	72	24	12	29	33	1.92
42238285--42238318	14	2.4	14	90	0	50	41	11	20	26	1.87
42238770--42238821	15	3.2	15	73	19	50	44	0	1	53	1.11
42238859--42238889	16	2.0	16	93	6	55	38	0	0	61	0.96
42238876--42238911	18	1.9	18	88	5	54	58	0	0	41	0.98
42239413--42239472	29	2.1	29	87	0	84	30	25	25	20	1.99
42255520--42255557	20	2.1	18	85	14	51	39	0	7	52	1.31
42256190--42256331	20	7.1	20	72	0	113	16	31	18	33	1.94
42256166--42256350	20	9.2	20	66	7	88	17	32	16	32	1.92
42256162--42256350	40	4.7	40	85	2	254	17	32	16	32	1.93
42256194--42256371	40	4.4	40	84	2	108	19	32	16	30	1.95
42256162--42256415	80	3.2	79	80	2	258	18	31	17	32	1.94
42258874--42258923	22	2.4	21	83	12	59	34	6	12	48	1.65
42261677--42261745	15	4.6	15	81	0	75	11	17	14	56	1.67
42261668--42261747	30	2.7	30	78	7	90	11	17	16	55	1.70
42268049--42268088	5	7.8	5	83	5	53	77	0	0	22	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42281185--42281282	26	3.8	25	80	9	99	29	17	13	39	1.87
42299385--42299441	20	2.8	20	94	0	96	36	12	19	31	1.89
42299491--42299625	26	5.3	26	87	5	181	28	20	22	28	1.99
42306480--42306517	19	2.0	19	100	0	76	21	10	10	57	1.61
42309897--42309972	31	2.5	31	82	2	91	25	18	14	42	1.88
42310207--42310279	31	2.3	32	88	4	103	45	13	19	21	1.85
42312206--42312285	30	2.7	28	75	9	79	52	17	10	20	1.72
42313064--42313095	3	10.7	3	100	0	64	68	0	31	0	0.90
42314134--42314207	1	74.0	1	87	0	103	4	93	0	2	0.42
42314137--42314213	37	2.1	37	90	0	118	5	90	1	2	0.56
42314592--42314646	21	2.6	21	75	21	60	50	0	1	47	1.11
42317648--42317731	41	2.0	41	97	0	159	30	15	11	41	1.83
42320951--42321013	27	2.3	26	76	10	63	36	3	11	49	1.54
42321008--42321055	10	4.9	10	76	2	53	25	6	2	66	1.26
42324512--42324551	21	2.0	20	90	5	62	35	0	22	42	1.54
42324517--42324559	21	2.1	21	83	12	54	32	2	20	44	1.65
42333938--42334104	47	3.6	47	88	2	228	32	8	30	28	1.87
42336655--42336756	29	3.6	29	84	4	127	24	17	30	27	1.97
42336655--42336765	58	1.9	57	83	5	143	25	17	30	27	1.97
42348810--42348838	11	2.5	12	88	11	51	34	0	0	65	0.93
42348813--42348838	11	2.4	11	100	0	52	30	0	0	69	0.89
42357009--42357043	13	2.8	12	83	8	52	31	11	0	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42357448--42357511	16	4.0	16	70	0	56	31	15	0	53	1.43
42357439--42357520	32	2.8	28	80	18	96	34	12	0	53	1.38
42361886--42361973	43	2.0	43	100	0	176	21	18	15	44	1.87
42373393--42373434	21	2.0	21	86	9	59	21	7	21	50	1.72
42373744--42373789	21	2.2	21	84	0	56	30	21	30	17	1.96
42376338--42376380	21	2.0	21	86	0	59	34	20	27	16	1.94
42377020--42377057	7	5.4	7	87	0	58	42	39	0	18	1.50
42377257--42377326	27	2.6	27	79	0	86	28	27	12	31	1.93
42382253--42382278	13	2.0	13	100	0	52	30	7	23	38	1.83
42382492--42382563	37	1.9	37	83	5	92	31	8	20	38	1.83
42383230--42383264	18	1.9	18	100	0	70	42	5	11	40	1.65
42389785--42389935	42	3.6	42	75	3	142	30	15	27	26	1.96
42400737--42400986	71	3.5	71	100	0	500	32	16	15	36	1.90
42402928--42403115	59	3.2	59	66	11	150	41	3	3	51	1.35
42402917--42403205	119	2.4	120	93	2	492	43	2	4	50	1.34
42403037--42403092	15	3.5	18	75	24	63	42	0	0	57	0.99
42402991--42403173	56	3.1	58	66	23	146	42	2	6	49	1.39
42403157--42403191	18	2.0	17	88	5	52	45	0	0	54	0.99
42411694--42411813	39	3.1	39	95	0	204	23	30	25	20	1.99
42416452--42416496	17	2.8	17	80	10	58	53	2	20	24	1.57
42416657--42416711	23	2.4	23	93	0	92	25	29	7	38	1.83
42417328--42417365	19	2.0	20	89	5	60	55	13	2	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42417281--42417426	72	2.0	71	90	3	231	54	8	5	31	1.54
42419341--42419378	20	1.9	20	100	0	76	21	23	23	31	1.98
42428354--42428435	41	2.0	41	100	0	164	36	12	17	34	1.87
42434671--42434731	16	3.6	17	79	16	65	34	0	0	65	0.93
42440688--42440723	17	2.1	17	89	0	54	41	25	11	22	1.86
42440799--42440840	22	2.0	21	85	4	57	69	2	0	28	1.01
42447543--42447572	9	3.3	9	95	0	51	33	60	0	6	1.23
42448333--42448386	6	9.2	6	80	11	67	51	0	0	48	1.00
42449341--42449379	19	2.1	19	100	0	78	25	0	35	38	1.56
42449470--42449494	3	8.3	3	100	0	50	0	32	0	68	0.90
42454490--42454523	17	2.0	17	94	0	59	85	0	14	0	0.60
42454490--42454520	10	3.1	10	95	0	53	83	0	16	0	0.64
42455519--42455648	65	2.0	66	98	1	253	23	12	5	59	1.53
42455520--42455648	66	2.0	64	98	1	240	23	12	5	58	1.54
42456754--42456795	14	3.1	14	86	3	50	14	9	4	71	1.28
42456808--42456846	14	2.8	14	88	0	51	30	7	0	61	1.24
42457380--42457473	47	2.0	47	97	0	179	30	43	2	23	1.65
42465873--42466023	44	3.6	41	80	8	117	24	19	24	31	1.98
42465914--42466031	41	2.8	43	83	8	145	23	19	25	31	1.98
42471127--42471166	20	2.0	20	95	0	71	35	5	32	27	1.79
42474271--42474298	4	7.0	4	100	0	56	75	0	0	25	0.81
42474660--42474717	26	2.3	27	80	11	70	56	1	1	39	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42480329--42480495	52	3.1	53	73	16	164	47	5	16	30	1.70
42480331--42480445	58	2.0	58	86	6	162	47	5	15	31	1.67
42480329--42480458	57	2.4	55	75	18	144	47	4	17	30	1.68
42496208--42496265	2	29.0	2	100	0	116	50	50	0	0	1.00
42496477--42496608	39	3.4	39	89	0	201	21	27	20	30	1.98
42504148--42504173	2	13.0	2	100	0	52	50	50	0	0	1.00
42504397--42504522	39	3.2	39	85	3	173	22	23	19	34	1.97
42513049--42513080	10	3.4	10	87	12	50	59	0	0	40	0.97
42516841--42516878	18	2.1	18	100	0	76	13	44	21	21	1.85
42521627--42521671	12	3.8	12	77	11	56	35	13	33	17	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290