genome.fa.s7.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  133  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45231530--45231663	48	2.8	45	83	10	144	52	5	9	32	1.57
45231796--45231827	11	2.9	11	90	0	55	40	0	18	40	1.51
45232589--45232639	15	3.3	16	75	10	52	45	39	5	9	1.62
45237094--45237843	44	16.8	44	71	11	348	33	18	19	28	1.96
45237108--45237708	133	4.5	130	72	11	367	32	18	19	29	1.95
45237373--45237708	89	3.8	86	73	13	261	34	18	17	29	1.94
45237374--45237712	181	1.9	174	84	5	446	34	17	18	29	1.94
45237092--45237798	314	2.3	313	83	3	838	33	18	19	28	1.96
45237506--45237837	133	2.5	131	83	5	377	34	21	18	26	1.96
45239066--45239162	3	32.7	3	78	2	106	30	6	2	60	1.32
45239329--45239393	3	21.0	3	77	12	60	29	1	4	64	1.22
45240539--45240586	25	1.9	25	82	0	60	20	8	6	64	1.43
45241094--45241193	49	2.0	49	90	0	155	31	21	22	26	1.98
45242771--45242810	16	2.7	16	85	11	50	45	2	0	52	1.14
45243086--45243127	3	14.0	3	80	9	50	38	0	2	59	1.10
45243355--45243382	14	2.0	14	100	0	56	14	7	14	64	1.48
45243927--45244102	70	2.3	75	81	11	184	42	1	19	37	1.59
45244052--45244305	110	2.3	110	97	0	472	41	0	18	39	1.51
45244390--45244471	34	2.4	33	80	9	94	41	3	23	31	1.72
45244996--45245052	16	3.7	16	71	17	57	47	0	24	28	1.52
45244994--45245062	30	2.3	30	97	2	131	46	0	23	30	1.53
45251165--45251224	26	2.3	26	82	5	77	38	21	21	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45255765--45255939	94	1.9	94	82	2	226	32	19	20	28	1.97
45255725--45256036	170	1.8	171	86	5	452	31	19	19	29	1.96
45255859--45257326	75	19.3	75	78	9	1210	32	18	17	31	1.94
45256611--45256785	94	1.9	94	82	2	226	32	19	20	28	1.97
45256535--45256882	170	2.0	169	85	6	470	31	19	18	29	1.96
45265530--45265565	12	3.0	12	87	0	54	41	5	27	25	1.77
45265526--45265557	16	1.9	17	93	6	57	40	6	28	25	1.79
45267247--45267339	3	29.7	3	74	16	59	60	3	3	33	1.29
45267247--45267330	19	4.2	20	75	19	61	59	3	3	33	1.32
45267247--45267339	14	7.4	12	70	20	59	60	3	3	33	1.29
45268122--45268172	25	2.0	25	92	0	84	3	3	27	64	1.28
45270348--45270380	16	2.1	16	94	0	57	9	18	42	30	1.81
45274433--45274512	35	2.3	34	80	6	90	35	26	17	21	1.95
45277981--45278027	18	2.5	19	72	6	51	51	8	4	36	1.52
45278335--45278396	23	2.7	24	69	20	60	51	0	1	46	1.10
45278969--45279003	6	5.7	6	86	6	52	51	0	2	45	1.16
45279288--45279334	18	2.5	19	72	6	51	51	8	4	36	1.52
45279642--45279703	23	2.7	24	69	20	60	51	0	1	46	1.10
45280276--45280310	6	5.7	6	86	6	52	51	0	2	45	1.16
45281223--45281279	24	2.5	24	80	5	64	47	12	0	40	1.41
45281351--45281396	23	2.0	23	95	0	83	41	34	6	17	1.75
45289659--45289699	21	2.0	21	100	0	82	24	17	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45294899--45294951	24	2.2	24	86	0	70	50	7	5	35	1.54
45300746--45300934	95	2.0	95	89	2	290	11	28	30	30	1.92
45306772--45306861	40	2.2	42	82	11	116	46	40	3	10	1.54
45307903--45308071	3	57.7	3	76	5	141	29	7	1	62	1.29
45308164--45308348	3	62.7	3	64	18	61	28	5	3	62	1.35
45308138--45308189	17	3.1	17	84	15	56	28	5	1	63	1.28
45308168--45308229	25	2.5	25	80	19	76	30	4	3	61	1.33
45308292--45308348	29	2.0	28	86	3	78	29	7	1	61	1.32
45319821--45320253	181	2.4	181	85	0	589	33	18	19	28	1.96
45320112--45320664	183	3.1	173	73	13	466	31	20	21	26	1.98
45320325--45320616	44	6.7	43	75	10	245	31	20	20	27	1.97
45322124--45322306	3	61.3	3	74	7	90	31	8	0	59	1.32
45322350--45322384	17	2.1	17	94	0	61	22	8	0	68	1.16
45322388--45322445	26	2.3	26	77	19	68	32	5	1	60	1.29
45326351--45326396	23	2.0	23	91	0	74	41	15	6	36	1.73
45332115--45332166	16	3.2	15	75	17	50	38	0	1	59	1.08
45343786--45343829	21	2.1	21	95	0	79	31	29	25	13	1.94
45344891--45345207	47	6.7	47	71	12	204	23	29	19	28	1.98
45350273--45350318	21	2.2	21	92	0	74	26	17	39	17	1.91
45351355--45351724	47	7.8	50	73	12	230	22	28	20	28	1.98
45357117--45357160	18	2.4	18	84	0	61	45	22	4	27	1.72
45358822--45358865	23	1.9	23	81	9	54	38	6	0	54	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45384648--45384745	23	4.3	23	89	2	153	31	25	21	21	1.98
45384655--45384743	45	2.0	45	93	0	151	31	25	22	20	1.98
45392547--45392624	3	27.3	3	69	23	53	34	0	3	61	1.14
45392558--45392632	24	3.0	24	79	11	73	37	0	4	58	1.17
45403860--45405804	977	2.0	973	91	1	3177	32	17	20	29	1.96
45409927--45409971	21	2.2	20	92	4	72	26	11	0	62	1.29
45414713--45414749	9	4.1	9	92	0	65	45	13	10	29	1.77
45414949--45415332	175	2.2	175	98	1	736	23	32	0	44	1.54
45419365--45419407	20	2.2	19	84	12	52	6	9	2	81	0.95
45419825--45419863	18	2.2	17	86	4	51	20	0	5	74	1.01
45419897--45419960	31	2.0	32	90	3	103	35	0	1	62	1.05
45419925--45419991	22	3.2	20	82	15	82	35	0	1	62	1.04
45420102--45420165	23	2.7	23	81	13	85	42	0	4	53	1.22
45420102--45420170	25	2.8	25	80	8	88	40	0	4	55	1.20
45420134--45420225	33	2.8	33	88	5	123	40	1	2	56	1.18
45420156--45420197	20	2.1	20	82	8	50	40	0	2	57	1.12
45420207--45420254	20	2.3	21	82	10	64	47	0	0	52	1.00
45420312--45420396	24	3.6	23	80	17	95	34	0	4	61	1.17
45420346--45420386	13	3.3	13	76	13	50	31	0	4	63	1.15
45420345--45420394	14	3.9	14	75	20	54	36	0	4	60	1.16
45420336--45420415	24	3.3	24	85	5	99	38	0	2	58	1.11
45420310--45420406	10	8.4	12	72	25	59	37	0	4	58	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45420469--45420518	12	3.7	13	76	23	50	48	0	0	52	1.00
45420800--45420842	18	2.3	18	92	4	68	79	2	6	11	1.02
45421022--45421116	45	2.1	46	82	9	115	56	1	0	42	1.06
45421061--45421116	16	3.7	15	72	11	51	57	0	0	42	0.99
45420994--45421123	31	4.0	30	72	20	95	58	1	0	39	1.13
45422694--45422766	25	3.0	25	74	21	73	65	1	2	30	1.15
45422716--45422757	21	2.0	21	85	4	57	61	2	4	30	1.29
45426159--45426211	23	2.6	19	73	21	52	62	5	0	32	1.19
45426165--45426215	23	2.4	22	84	12	70	62	5	0	31	1.19
45426191--45426244	26	2.0	29	85	10	78	61	3	0	35	1.14
45426441--45426504	26	2.5	26	82	5	67	70	7	4	17	1.29
45429438--45429525	25	3.6	25	79	11	76	37	12	20	29	1.89
45429459--45429552	25	3.8	24	81	5	91	37	13	19	29	1.90
45429490--45429565	25	3.0	24	86	7	98	35	17	17	30	1.92
45429531--45429844	60	5.2	60	83	1	389	34	16	15	33	1.91
45429529--45429884	120	3.0	118	84	5	427	33	16	15	33	1.90
45429516--45429903	180	2.1	182	78	8	423	34	16	15	33	1.90
45432197--45432293	45	2.2	45	96	0	176	22	17	17	42	1.89
45432265--45432538	46	6.0	47	94	1	425	21	23	15	39	1.91
45435541--45435611	24	3.0	24	76	18	67	8	9	5	76	1.16
45435617--45435657	14	2.9	15	82	14	59	26	0	0	73	0.84
45435664--45435737	22	3.1	24	68	22	57	40	0	6	52	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45435729--45435824	21	4.5	21	82	10	115	44	0	0	55	0.99
45435729--45435824	43	2.3	43	85	8	126	44	0	0	55	0.99
45435729--45435836	22	5.1	21	79	9	105	48	0	0	51	1.00
45435800--45435841	20	2.2	20	83	12	52	47	2	0	50	1.14
45435890--45435940	22	2.4	22	80	9	61	35	0	3	60	1.15
45435882--45435907	9	2.9	9	100	0	52	42	0	0	57	0.98
45435890--45435940	21	2.4	21	80	9	59	35	0	3	60	1.15
45436071--45436113	14	3.1	14	76	3	52	67	0	0	32	0.91
45436074--45436174	27	3.6	28	78	13	102	67	1	0	30	1.02
45436118--45436174	9	5.9	9	82	13	69	66	3	0	29	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290