genome.fa.s7.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  151  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51371608--51372718	47	23.6	47	96	1	1990	29	27	8	33	1.86
51375385--51375466	28	2.9	28	87	1	110	34	25	12	28	1.92
51385078--51385117	21	1.9	21	90	10	64	40	22	7	30	1.81
51392135--51392171	18	2.1	19	90	10	60	29	8	27	35	1.85
51394774--51394875	40	2.6	39	86	7	134	23	27	22	26	2.00
51407299--51407389	42	2.2	42	83	0	110	21	23	30	24	1.99
51408508--51408691	27	6.8	27	89	2	262	29	23	6	40	1.80
51408683--51408848	27	6.2	26	75	12	129	38	22	10	28	1.87
51408723--51408872	81	1.9	81	91	0	246	42	21	7	28	1.79
51408723--51408863	27	5.2	27	86	0	201	42	21	6	29	1.77
51408885--51408936	27	1.9	27	84	7	70	42	11	9	36	1.74
51408993--51409054	27	2.3	27	80	5	72	37	19	22	20	1.95
51410151--51410265	31	3.7	31	92	1	178	26	16	29	27	1.97
51412839--51413138	150	2.0	150	99	0	591	37	10	22	30	1.87
51414216--51414341	55	2.2	56	88	2	182	26	12	28	32	1.93
51414216--51414341	28	4.5	28	90	2	182	26	12	28	32	1.93
51414244--51414354	28	4.0	27	90	3	116	28	11	26	33	1.91
51414441--51414609	85	2.0	85	96	0	311	33	10	21	35	1.87
51414623--51414720	28	3.5	28	95	1	171	26	12	28	32	1.92
51414623--51414733	28	4.0	27	90	3	116	28	11	26	33	1.91
51416830--51416993	82	2.0	82	98	0	319	23	19	25	31	1.98
51417662--51417751	45	2.0	45	100	0	180	37	13	26	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51419354--51419451	27	3.5	28	90	2	135	26	13	28	31	1.94
51419382--51419464	27	3.0	27	87	5	96	30	12	25	32	1.92
51419354--51419465	28	4.0	27	83	6	98	28	12	25	33	1.92
51425732--51425779	21	2.2	22	77	3	53	29	25	2	43	1.66
51427886--51427914	13	2.2	13	100	0	58	24	34	20	20	1.97
51431276--51431300	13	1.9	13	100	0	50	48	0	40	12	1.40
51436522--51436593	29	2.5	28	86	11	101	27	15	29	27	1.96
51436552--51436879	174	1.9	174	96	0	611	30	14	24	31	1.94
51448367--51448403	14	2.4	16	86	8	51	35	21	0	43	1.53
51448829--51448879	20	2.7	18	82	14	59	39	19	0	41	1.52
51451049--51451097	18	2.5	19	80	16	55	51	4	2	42	1.32
51453767--51453823	30	1.9	30	85	0	78	19	33	28	19	1.96
51454790--51454845	25	2.2	25	83	0	67	39	17	19	23	1.92
51458653--51458740	45	2.0	45	90	0	140	37	25	11	26	1.89
51467096--51467312	45	4.9	45	90	3	332	24	20	28	26	1.99
51467096--51467352	90	2.9	90	87	4	346	25	20	27	27	1.99
51475000--51475542	270	2.0	270	100	0	1086	33	13	16	37	1.87
51475563--51475707	38	3.8	38	81	3	148	15	17	26	40	1.90
51475563--51475707	76	1.9	76	81	0	173	15	17	26	40	1.90
51479931--51480004	23	3.1	24	75	16	73	58	0	2	39	1.13
51479960--51479991	8	4.0	8	91	0	55	53	0	0	46	1.00
51484517--51484580	23	2.7	23	76	13	69	62	7	7	21	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51500631--51500678	19	2.6	19	86	3	71	35	2	14	47	1.56
51516108--51516209	40	2.6	40	87	7	138	23	28	23	24	2.00
51519763--51519795	16	2.1	16	100	0	66	45	12	6	36	1.66
51520867--51521018	35	4.3	35	88	0	214	14	14	31	39	1.86
51525583--51525801	101	2.2	100	85	2	287	28	22	14	33	1.94
51529768--51529872	40	2.6	40	89	0	165	22	19	29	28	1.98
51531430--51531459	14	2.1	14	100	0	60	13	26	53	6	1.64
51537764--51538021	40	6.5	40	95	1	448	24	22	27	25	2.00
51555405--51555572	40	4.2	40	83	4	106	25	27	23	23	2.00
51555428--51555572	40	3.6	40	85	4	193	23	26	24	25	2.00
51560989--51561188	48	4.2	46	75	9	161	23	30	19	27	1.98
51561080--51561201	46	2.6	48	84	6	133	25	28	17	28	1.97
51568890--51569063	49	3.6	48	80	6	190	23	26	20	29	1.98
51568980--51569148	48	3.6	46	77	14	150	23	26	18	31	1.98
51569530--51569586	30	1.9	30	88	0	87	33	26	8	31	1.87
51571253--51571593	27	12.6	27	85	0	398	39	21	8	30	1.84
51571635--51571902	27	9.6	27	82	7	277	36	19	19	23	1.95
51571686--51571762	35	2.2	35	88	0	118	42	22	15	19	1.88
51571693--51571753	19	3.4	19	66	13	56	40	21	18	19	1.91
51572441--51572541	12	8.8	12	72	16	70	22	20	9	46	1.80
51572475--51572540	6	10.8	6	77	9	62	19	19	10	50	1.77
51572441--51572528	37	2.4	37	92	0	140	22	21	10	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51572425--51572540	37	3.3	36	78	12	134	21	19	10	48	1.79
51578511--51578605	49	1.9	49	100	0	190	36	18	16	27	1.93
51581089--51581129	13	3.0	14	80	16	50	78	0	2	19	0.87
51581092--51581129	18	2.1	18	90	9	60	78	0	2	18	0.86
51581675--51581741	33	2.0	33	94	5	118	52	17	11	17	1.74
51585780--51586193	37	11.1	37	75	3	310	29	16	15	38	1.90
51585793--51586193	75	5.4	74	74	6	301	29	16	15	38	1.90
51585793--51586193	112	3.6	112	80	4	387	29	16	15	38	1.90
51594789--51595003	40	5.4	40	89	1	308	24	22	27	26	2.00
51598222--51598414	27	7.1	27	85	0	260	39	17	8	34	1.81
51598213--51598414	81	2.5	81	92	0	332	38	17	8	35	1.81
51598419--51598761	27	12.7	27	90	0	497	34	19	20	25	1.96
51599188--51599252	22	3.0	22	80	8	78	20	23	23	33	1.97
51599411--51599512	27	3.8	27	84	5	125	19	23	20	36	1.95
51599660--51599717	19	3.4	19	65	30	58	18	17	17	46	1.84
51599649--51599768	6	19.3	6	73	19	95	18	17	15	48	1.82
51599649--51599784	31	4.4	31	88	3	177	18	16	15	49	1.80
51603116--51603169	21	2.6	21	96	0	99	18	25	35	20	1.95
51604752--51604900	42	3.5	43	76	11	121	27	18	24	30	1.98
51611149--51611291	40	3.5	40	78	11	157	22	23	29	25	1.99
51615002--51615044	21	2.0	21	100	0	86	23	4	39	32	1.75
51627694--51627866	46	3.7	46	78	13	210	21	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51627691--51627861	93	1.8	93	96	0	315	21	21	28	28	1.99
51639528--51639587	12	5.0	12	75	18	54	43	0	0	56	0.99
51639666--51639704	20	2.0	20	94	0	69	41	2	5	51	1.38
51643644--51643677	14	2.4	14	95	0	59	70	5	2	20	1.21
51650365--51650400	18	2.1	18	94	5	65	44	5	27	22	1.75
51658026--51658059	16	2.1	17	94	5	61	35	8	11	44	1.72
51659141--51659179	10	4.1	9	86	6	51	61	2	0	35	1.10
51659124--51659172	24	2.0	24	85	14	66	59	6	0	34	1.22
51660097--51660181	42	2.0	44	88	6	129	51	4	3	40	1.40
51663655--51663688	2	17.0	2	100	0	68	50	0	50	0	1.00
51669705--51669753	21	2.3	21	96	3	89	32	8	10	48	1.66
51674111--51674266	79	2.0	79	97	0	294	30	25	14	29	1.94
51680891--51680923	15	2.3	15	89	5	50	33	3	0	63	1.10
51681121--51681145	11	2.3	11	100	0	50	56	12	8	24	1.62
51685461--51685517	24	2.3	27	72	27	63	36	3	1	57	1.26
51685466--51685515	22	2.2	22	86	13	66	40	2	2	56	1.22
51687833--51687858	12	2.2	12	100	0	52	26	23	15	34	1.94
51687960--51688184	48	4.7	49	75	4	197	25	25	20	27	1.99
51690438--51690462	5	5.0	5	100	0	50	20	0	0	80	0.72
51691807--51691864	26	2.2	27	87	3	82	12	6	1	79	1.00
51691827--51691883	20	2.8	20	86	7	80	12	1	5	80	0.95
51691816--51691883	6	10.5	6	77	14	64	11	4	4	79	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51697254--51697287	12	2.8	12	90	0	50	44	2	5	47	1.42
51698476--51698525	13	3.9	13	75	12	50	38	26	0	36	1.57
51714963--51715009	21	2.2	21	92	0	76	38	0	14	46	1.45
51720675--51720745	31	2.3	31	85	2	88	46	1	28	23	1.61
51733518--51733548	10	3.1	10	95	0	53	0	67	19	12	1.22
51733828--51733858	16	1.9	16	93	0	53	38	0	6	54	1.26
51734335--51734373	14	2.8	14	88	0	60	61	0	0	38	0.96
51739060--51739122	30	2.1	30	96	0	117	22	17	26	33	1.96
51739070--51739134	30	2.2	30	86	5	87	21	18	24	35	1.96
51739308--51739421	19	5.9	19	88	10	178	35	10	16	36	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290