genome.fa.s7.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  185  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63360730--63360827	44	2.2	44	85	3	126	34	20	16	28	1.94
63360738--63360956	94	2.3	94	80	0	222	33	18	17	31	1.94
63360703--63361240	228	2.3	229	80	5	588	31	18	20	28	1.96
63360979--63361423	188	2.4	188	80	7	455	30	18	21	29	1.97
63361164--63361413	44	5.4	44	66	19	125	30	18	22	29	1.97
63360979--63361412	94	4.7	93	77	8	397	29	18	21	29	1.97
63363420--63363588	45	3.8	44	87	7	220	24	28	23	24	2.00
63374093--63374263	45	3.9	44	80	8	152	25	27	21	25	1.99
63374131--63374263	45	3.0	45	83	4	169	27	25	21	26	1.99
63385474--63385512	21	1.9	20	84	5	51	10	2	15	71	1.23
63392960--63393015	28	2.0	28	96	0	103	35	12	21	30	1.90
63399266--63399323	9	7.0	8	75	13	55	82	0	13	3	0.79
63399275--63399321	7	6.6	7	81	15	53	85	0	10	4	0.74
63400268--63401643	84	16.4	84	88	5	2020	30	23	20	24	1.99
63400268--63401643	166	8.2	168	91	3	2047	30	23	20	24	1.99
63402460--63402546	19	4.7	19	90	5	142	34	11	16	37	1.84
63402450--63402546	36	2.6	35	74	20	90	35	11	15	38	1.83
63426233--63426282	22	2.3	22	83	13	59	62	0	4	34	1.14
63427083--63427120	17	2.3	17	86	13	53	78	10	5	5	1.06
63428031--63428415	44	8.7	44	87	2	515	28	25	14	31	1.95
63442639--63442671	17	1.9	17	93	0	57	18	6	6	69	1.30
63443002--63443340	44	7.7	44	88	1	509	28	25	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63447668--63447721	28	1.9	28	88	0	81	16	37	5	40	1.72
63457410--63457529	33	4.0	29	73	21	86	64	4	4	27	1.31
63457573--63457633	25	2.4	25	84	10	72	67	1	1	29	1.10
63458221--63458342	61	2.0	60	90	6	183	32	9	10	45	1.72
63458334--63458371	17	2.2	18	85	4	51	81	10	2	5	0.94
63458951--63458993	17	2.7	16	82	10	61	18	4	4	72	1.20
63470461--63470495	17	1.9	17	88	11	52	37	0	2	60	1.12
63470448--63470500	19	2.8	20	75	18	58	41	0	1	56	1.10
63471662--63471824	83	2.0	84	97	1	310	33	12	11	42	1.78
63473531--63473580	24	2.1	24	85	10	68	26	2	2	70	1.09
63476160--63476210	22	2.4	22	80	3	59	21	29	15	33	1.94
63486684--63486734	22	2.4	22	80	3	59	21	29	15	33	1.94
63489268--63489490	115	1.9	115	99	0	437	26	28	14	30	1.95
63491917--63492081	83	2.0	83	98	0	321	47	10	6	36	1.62
63493414--63493863	224	2.0	224	96	0	837	26	16	24	32	1.96
63493935--63494138	102	2.0	102	97	0	381	38	20	13	27	1.90
63494741--63494805	32	2.0	32	96	0	121	29	23	26	21	1.99
63495874--63495960	19	4.7	19	90	5	142	34	14	12	37	1.85
63495874--63495954	36	2.2	36	88	4	126	34	13	13	38	1.84
63495874--63495970	36	2.6	35	74	20	99	35	14	12	38	1.84
63496354--63497300	206	4.6	206	92	0	1486	29	21	17	30	1.96
63496362--63497300	411	2.3	411	93	0	1565	29	21	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63497247--63497779	44	12.1	44	68	19	220	29	24	15	30	1.96
63497278--63497867	88	6.7	88	89	4	879	29	23	16	30	1.96
63498550--63498596	17	2.9	17	84	12	64	12	10	0	76	1.02
63498566--63498617	17	3.2	16	86	10	70	5	11	1	80	0.96
63504802--63504855	19	2.9	19	91	5	85	37	16	11	35	1.84
63506723--63507190	44	10.5	44	81	9	518	28	26	14	30	1.95
63506895--63507005	56	2.0	56	89	3	170	30	26	14	28	1.95
63506953--63507190	127	1.8	133	86	6	355	28	28	14	29	1.95
63506775--63507119	188	1.8	188	89	0	537	28	26	14	30	1.95
63511543--63511610	35	1.9	35	93	0	118	27	16	35	20	1.94
63519745--63519858	56	2.0	57	93	5	196	47	15	9	27	1.77
63523975--63524124	67	2.2	67	81	8	171	32	17	28	21	1.96
63523999--63524181	67	2.8	64	77	8	192	30	16	30	22	1.96
63526650--63526701	24	2.2	24	89	6	79	30	0	1	67	1.02
63528245--63528305	5	12.4	5	77	16	56	32	3	0	63	1.10
63531676--63531732	22	2.6	22	80	2	62	21	26	21	31	1.98
63531750--63531845	50	1.9	50	97	0	183	27	16	20	35	1.94
63539196--63539341	51	2.9	50	84	3	195	28	25	19	26	1.98
63542566--63542830	133	2.0	133	96	0	494	30	10	20	38	1.86
63546228--63546271	15	2.9	15	80	12	54	11	15	15	56	1.66
63553680--63553918	50	5.0	45	70	15	149	26	29	19	24	1.98
63553680--63553918	96	2.5	95	84	4	289	26	29	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63553728--63553901	50	3.6	50	73	9	160	27	30	18	24	1.98
63556610--63556645	16	2.3	16	90	4	56	61	2	19	16	1.47
63561931--63561955	13	1.9	13	100	0	50	32	0	8	60	1.26
63577207--63577365	43	3.8	41	75	11	133	28	25	18	27	1.98
63600448--63600488	20	2.0	20	95	0	73	29	34	26	9	1.88
63602297--63602354	27	2.1	27	87	0	80	34	37	8	18	1.82
63618279--63618314	19	1.9	19	88	5	56	44	11	0	44	1.39
63634281--63634360	29	2.7	29	78	1	88	26	23	30	20	1.98
63638740--63638764	6	4.2	6	100	0	50	0	16	0	84	0.63
63639386--63639434	20	2.5	20	86	6	73	24	6	16	53	1.66
63640827--63640860	15	2.2	16	89	5	52	50	0	29	20	1.49
63651039--63651143	27	3.9	27	85	9	126	35	21	23	19	1.96
63651136--63651309	87	2.0	87	100	0	348	36	29	11	21	1.89
63652795--63652902	26	4.2	26	91	0	180	37	24	6	32	1.81
63657627--63657783	68	2.3	68	83	3	192	41	17	15	25	1.89
63660102--63660238	29	4.7	30	72	13	117	29	31	18	21	1.97
63660102--63660270	58	2.9	58	95	0	295	28	30	18	21	1.97
63660109--63660267	29	5.5	29	70	12	112	29	28	19	22	1.98
63660439--63660547	43	2.5	43	92	0	173	34	33	22	10	1.87
63663217--63663373	68	2.3	68	82	3	183	42	17	14	26	1.87
63664549--63664656	26	4.2	26	89	0	171	33	6	23	37	1.80
63670161--63670270	57	1.9	58	86	1	159	28	29	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63670437--63670554	43	2.8	42	90	1	182	33	33	22	11	1.89
63673156--63673226	36	2.0	36	97	0	133	29	28	8	33	1.86
63680773--63681004	56	4.1	56	98	0	446	22	22	9	46	1.80
63687506--63687690	79	2.3	81	80	8	209	24	27	22	24	2.00
63687487--63687690	40	5.1	40	80	8	220	24	27	22	25	2.00
63688776--63688853	39	2.0	39	97	0	147	35	29	10	24	1.88
63689995--63690073	27	3.0	27	88	5	108	35	22	24	17	1.95
63691657--63691764	26	4.2	26	93	0	189	36	24	7	32	1.83
63700042--63700317	69	4.0	69	100	0	552	36	21	13	28	1.91
63722091--63722135	23	2.0	23	100	0	90	13	40	4	42	1.64
63726064--63726095	14	2.4	13	90	10	55	62	12	6	18	1.50
63730452--63730489	19	2.0	19	100	0	76	26	5	26	42	1.76
63731925--63731955	15	2.1	15	100	0	62	25	32	12	29	1.93
63733154--63733231	28	2.8	28	77	9	72	17	3	35	42	1.68
63733216--63733286	7	9.9	7	80	6	70	16	0	46	36	1.48
63733163--63733257	28	3.4	28	80	4	93	16	2	40	41	1.61
63733223--63733285	22	2.9	22	82	0	81	15	0	47	36	1.46
63733198--63733286	14	6.2	14	82	7	81	17	0	43	38	1.50
63735296--63735482	93	2.0	93	98	0	365	35	3	5	55	1.40
63736997--63737480	9	54.3	9	79	4	498	46	22	0	30	1.58
63736993--63737471	62	7.8	61	88	5	532	46	22	0	30	1.58
63737179--63737220	21	2.0	21	86	9	59	50	28	0	21	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63737058--63737472	62	6.8	62	90	4	569	46	23	0	29	1.58
63746035--63746079	20	2.3	20	88	3	65	28	17	26	26	1.98
63746169--63746221	28	1.9	28	88	3	81	30	20	24	24	1.99
63748583--63748611	14	2.1	14	93	6	51	34	0	10	55	1.34
63749029--63749101	21	3.5	21	76	0	74	28	16	49	5	1.68
63749453--63749621	86	2.0	86	86	2	241	26	18	26	29	1.98
63749436--63749596	43	3.7	43	80	4	182	27	18	26	27	1.98
63771157--63771248	46	2.0	46	97	0	175	20	19	22	36	1.95
63773807--63773839	13	2.6	13	90	4	50	39	0	12	48	1.40
63776792--63776875	39	2.1	40	93	4	152	34	25	22	17	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290