Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  130  of  290  ( 34714 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44063709--44063738
7
4.3
7
100
0
60
73
0
0
26
0.84
44069281--44069322
15
2.8
15
96
0
75
54
9
4
30
1.53
44076604--44076642
10
3.8
10
90
10
53
10
12
0
76
1.01
44076709--44076780
29
2.5
29
75
6
67
47
5
1
45
1.34
44077583--44077629
23
2.1
21
84
7
58
21
4
4
70
1.22
44080774--44080807
17
2.0
18
88
11
54
38
2
0
58
1.13
44097251--44097357
42
2.6
42
80
1
126
18
39
21
20
1.93
44099009--44099081
28
2.6
28
78
8
76
47
1
1
49
1.18
44102274--44102378
19
5.9
17
65
19
54
63
1
1
32
1.16
44102309--44102389
26
3.1
26
72
8
74
60
0
3
35
1.15
44102336--44102389
18
2.9
19
71
18
51
59
0
5
35
1.21
44102976--44103138
89
1.9
87
84
7
222
33
6
14
45
1.70
44102976--44103183
89
2.4
85
81
11
217
32
6
15
45
1.71
44108183--44108236
20
2.6
21
82
11
67
35
0
7
57
1.27
44108222--44108270
3
17.3
3
76
19
52
28
2
0
69
1.00
44108226--44108264
11
3.5
11
92
0
69
28
2
0
69
1.02
44108222--44108263
19
2.2
19
87
8
59
26
2
0
71
0.98
44108302--44108738
219
2.0
219
99
0
865
40
14
17
26
1.88
44124867--44124928
32
1.9
32
96
0
115
30
27
4
37
1.78
44136779--44136822
21
2.0
23
86
8
65
27
15
31
25
1.96
44137334--44137412
39
2.0
40
87
2
115
32
15
20
31
1.93
44140496--44140554
22
2.7
21
82
10
64
38
5
13
42
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44140506--44140554
22
2.2
24
85
10
68
34
6
14
44
1.70
44140699--44140723
13
1.9
13
100
0
50
32
0
20
48
1.50
44141810--44141932
42
2.9
42
79
10
124
22
17
26
33
1.96
44149117--44149225
44
2.6
41
75
12
103
22
18
24
33
1.96
44158685--44158725
21
2.0
20
90
4
64
41
19
0
39
1.52
44159685--44159741
28
1.9
31
86
10
84
75
7
15
1
1.10
44185434--44185458
8
3.1
8
100
0
50
88
0
0
12
0.53
44186008--44186145
70
2.0
69
83
8
174
42
12
6
39
1.68
44194442--44194584
58
2.5
58
80
4
155
53
9
9
27
1.64
44194572--44194705
53
2.5
53
84
3
162
50
8
11
29
1.68
44194828--44194882
20
2.8
20
83
5
67
61
10
3
23
1.44
44202409--44202442
17
1.9
18
94
5
61
11
35
32
20
1.89
44203784--44203885
28
3.5
27
71
19
80
24
28
20
26
1.99
44203785--44203921
60
2.3
59
83
8
161
25
24
20
29
1.99
44206286--44206314
15
1.9
15
100
0
58
58
0
0
41
0.98
44206403--44206446
19
2.4
18
88
7
63
43
6
0
50
1.29
44208980--44209088
6
17.7
6
75
16
98
50
16
14
18
1.78
44208980--44209088
25
4.4
24
79
14
98
50
16
14
18
1.78
44208989--44209092
31
3.4
31
91
2
156
51
15
14
18
1.76
44209207--44209288
28
3.0
26
82
8
92
36
21
21
19
1.95
44209447--44209504
22
2.6
22
86
0
71
31
22
27
18
1.97
44209941--44210090
27
5.6
27
80
3
158
25
18
20
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44209962--44210090
54
2.4
54
87
5
181
25
17
20
37
1.93
44210111--44210521
27
15.3
27
80
2
423
31
9
20
38
1.84
44210210--44210521
107
2.9
108
90
1
475
30
8
21
39
1.83
44211249--44211292
20
2.2
20
100
0
88
54
20
20
4
1.62
44212717--44212851
39
3.4
39
72
11
107
27
28
20
23
1.99
44214732--44214801
33
2.1
34
81
7
81
54
4
0
41
1.20
44218308--44218419
59
1.9
59
92
0
188
19
15
32
33
1.93
44224942--44224983
22
1.9
22
85
9
59
66
9
7
16
1.42
44235071--44235154
42
2.0
42
92
0
141
25
16
20
38
1.93
44240561--44240623
31
2.0
31
96
0
117
15
26
19
38
1.92
44240952--44241082
60
2.2
60
82
5
167
35
11
18
34
1.87
44245360--44245385
8
3.2
8
100
0
52
46
11
0
42
1.40
44253935--44253975
21
2.0
21
90
0
64
29
21
29
19
1.98
44255881--44255914
16
2.1
16
88
0
50
50
14
17
17
1.79
44256638--44256685
26
1.9
24
83
8
60
12
6
8
72
1.26
44257812--44257873
31
2.0
31
100
0
124
48
12
12
25
1.77
44258709--44258742
11
3.2
11
83
8
52
79
8
2
8
1.03
44259743--44259845
4
26.5
4
71
14
56
23
1
5
68
1.21
44259743--44259800
27
2.1
27
84
6
73
20
1
3
74
1.06
44267368--44267527
81
2.0
83
81
5
191
27
18
4
49
1.67
44278200--44278238
8
4.9
8
81
12
53
35
0
2
61
1.10
44283237--44283289
25
2.1
25
100
0
106
32
18
18
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44285653--44285697
6
7.3
6
80
5
54
64
4
17
13
1.44
44285590--44285729
73
1.9
75
82
8
180
55
7
16
21
1.65
44285726--44285923
99
2.0
99
90
2
308
42
9
18
29
1.81
44287358--44287394
5
7.4
5
93
0
65
37
0
2
59
1.12
44287442--44287509
17
3.9
17
76
17
68
75
4
20
0
0.98
44287485--44287518
12
2.8
12
91
8
52
73
0
26
0
0.83
44295145--44295227
39
2.1
39
97
0
157
46
0
21
31
1.51
44307174--44308778
803
2.0
803
99
0
3201
23
20
25
30
1.99
44310345--44310444
38
2.6
38
83
1
119
36
19
18
27
1.94
44312126--44312197
33
2.2
33
97
0
135
36
11
15
37
1.83
44320458--44320482
12
2.1
12
100
0
50
48
8
0
44
1.32
44322452--44322476
12
2.1
12
100
0
50
48
8
0
44
1.32
44323822--44323949
66
1.9
66
88
3
195
41
13
21
23
1.88
44325451--44325487
17
2.2
17
90
0
56
29
0
5
64
1.15
44325527--44325567
20
2.0
20
90
0
64
26
0
12
60
1.31
44326455--44326493
15
2.6
15
87
0
51
25
10
7
56
1.59
44338386--44338482
33
2.9
33
92
0
149
22
8
39
29
1.83
44350045--44350084
3
13.3
3
94
0
71
65
2
0
32
1.06
44351680--44351778
50
2.0
50
82
7
121
28
13
18
40
1.88
44351844--44352101
93
2.8
94
78
6
274
31
22
16
29
1.96
44351870--44352145
94
2.9
94
78
4
290
30
20
16
32
1.95
44366504--44366548
19
2.4
19
88
3
65
42
6
4
46
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44366514--44366552
19
2.1
18
95
4
69
38
2
5
53
1.37
44371240--44371385
73
2.0
73
100
0
292
49
10
13
26
1.75
44373381--44373415
17
2.1
17
100
0
70
37
0
17
45
1.48
44374441--44374756
158
2.0
158
98
0
605
31
19
18
29
1.96
44378683--44378904
40
5.6
40
96
1
394
26
27
22
23
2.00
44388050--44388267
40
5.5
40
91
1
350
27
26
22
22
1.99
44390114--44390142
9
3.3
9
90
9
51
68
20
0
10
1.18
44390108--44390142
17
2.1
16
94
5
61
68
20
0
11
1.20
44394125--44394149
12
2.1
12
100
0
50
32
28
8
32
1.86
44399105--44399146
21
2.0
21
100
0
84
42
19
14
23
1.87
44399247--44399283
15
2.5
15
86
0
56
59
0
2
37
1.12
44399523--44399571
13
3.5
13
76
13
53
34
0
0
65
0.93
44403960--44404071
11
10.4
11
72
19
53
27
5
1
65
1.25
44404023--44404064
3
14.3
3
95
5
77
30
0
0
69
0.89
44404018--44404064
12
4.0
11
91
8
67
29
2
0
68
1.02
44405852--44405918
31
2.2
31
83
0
80
59
16
5
17
1.56
44406166--44406262
21
4.6
21
75
5
97
3
47
18
30
1.64
44406677--44406705
14
2.1
14
93
6
51
58
6
0
34
1.25
44406857--44406894
19
2.1
18
85
9
51
52
0
7
39
1.31
44410024--44410048
12
2.1
12
100
0
50
32
28
8
32
1.86
44411910--44412206
9
33.8
9
79
6
277
37
3
12
47
1.56
44411946--44412203
44
5.9
45
91
3
332
36
3
11
48
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44412265--44412304
7
5.7
7
100
0
80
70
15
15
0
1.18
44414108--44414145
19
2.0
19
100
0
76
21
26
31
21
1.98
44414168--44414214
19
2.4
20
82
7
60
36
4
38
21
1.73
44415322--44415490
92
1.8
92
89
2
268
23
5
28
42
1.77
44415958--44416155
80
2.4
81
80
10
210
25
19
19
35
1.95
44415997--44416173
41
4.4
40
84
3
178
23
16
20
39
1.92
44416021--44416173
41
3.8
41
84
3
186
22
17
19
39
1.92
44416020--44416173
82
1.9
80
88
5
229
22
18
19
39
1.92
44431045--44431089
23
2.0
23
83
8
58
42
2
13
42
1.56
44433262--44433381
40
3.0
40
90
1
179
28
28
20
23
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290