genome.fa.s7.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  96  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32419931--32419998	31	2.2	32	89	2	102	55	26	1	16	1.49
32419944--32420005	32	2.0	31	90	3	97	56	24	1	17	1.50
32419923--32419989	8	8.4	8	69	18	50	53	31	1	13	1.49
32435056--32435104	23	2.2	23	88	3	73	51	0	8	40	1.32
32435388--32435556	40	4.2	40	83	0	212	20	26	18	34	1.96
32435409--32435557	80	1.9	81	91	1	246	19	24	18	36	1.94
32436711--32436754	19	2.3	19	84	7	54	27	15	6	50	1.70
32437134--32437294	86	1.9	86	83	5	209	36	22	15	26	1.94
32445137--32445307	93	1.8	93	96	0	315	28	29	21	21	1.98
32445132--32445304	46	3.7	46	80	13	219	28	28	21	21	1.98
32445727--32445786	30	2.0	30	90	0	93	30	25	8	36	1.85
32452727--32452897	93	1.8	93	96	0	315	28	29	21	21	1.98
32452722--32452894	46	3.7	46	80	13	219	28	28	21	21	1.98
32453317--32453376	30	2.0	30	90	0	93	30	25	8	36	1.85
32457473--32457945	236	2.0	236	100	0	946	31	21	13	33	1.92
32463647--32463692	20	2.2	20	84	7	56	73	8	8	8	1.24
32466164--32466194	14	2.2	14	100	0	62	41	0	0	58	0.98
32466340--32466387	25	1.9	25	83	8	62	39	6	0	54	1.26
32471508--32472558	524	2.0	524	99	0	2084	36	17	24	21	1.95
32476379--32476882	40	12.6	40	97	0	909	24	29	20	26	1.99
32482969--32483679	205	3.5	204	88	2	1036	30	17	21	30	1.96
32485497--32485523	14	1.9	14	100	0	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32485666--32485713	25	1.9	25	83	8	62	37	4	0	58	1.18
32488362--32488630	46	5.8	46	76	14	275	20	19	29	30	1.97
32488359--32488623	93	2.8	93	95	0	476	21	20	29	29	1.98
32490682--32490945	40	6.7	40	89	5	360	25	21	27	25	1.99
32490682--32490978	119	2.5	118	81	9	338	26	21	27	25	1.99
32498185--32498448	40	6.7	40	89	5	360	25	21	27	25	1.99
32498185--32498481	119	2.5	118	81	9	338	26	21	27	25	1.99
32505880--32506148	46	5.8	46	76	14	275	20	19	29	30	1.97
32505877--32506141	93	2.8	93	95	0	476	21	20	29	29	1.98
32511420--32511589	40	4.3	40	87	0	207	27	28	20	23	1.99
32514380--32514436	27	2.3	25	78	21	66	31	0	10	57	1.32
32523721--32523761	13	3.0	14	76	20	50	43	0	0	56	0.99
32523923--32524016	35	2.5	40	84	10	108	43	9	1	45	1.43
32525156--32525208	13	4.2	13	79	13	56	71	1	1	24	1.06
32525163--32525197	17	2.0	18	88	5	54	74	2	0	22	0.95
32527604--32527656	27	2.0	26	96	3	97	30	20	0	49	1.50
32530990--32531114	51	2.7	47	81	9	132	22	17	29	30	1.97
32535075--32535117	20	2.2	20	100	0	86	25	18	27	27	1.98
32535463--32535545	43	1.9	43	95	0	148	38	25	14	21	1.91
32542474--32542511	15	2.6	15	88	12	53	65	0	5	28	1.14
32548568--32548651	43	1.9	44	85	2	116	29	29	17	22	1.97
32562785--32562832	21	2.2	22	78	14	55	47	2	2	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32564273--32564312	18	2.2	18	86	0	53	40	2	0	57	1.12
32564327--32564365	14	2.7	15	88	11	55	46	0	2	51	1.14
32572355--32572419	28	2.4	27	94	5	121	27	0	27	44	1.55
32574716--32574884	48	3.6	47	80	12	154	27	16	30	25	1.97
32574670--32574936	143	1.9	138	80	5	302	27	17	29	25	1.97
32574760--32574933	48	3.7	47	81	8	167	27	16	31	25	1.96
32574887--32575006	60	2.0	60	100	0	240	28	18	25	28	1.98
32594424--32594507	34	2.5	34	82	1	107	27	13	16	42	1.85
32594578--32594734	45	3.5	45	84	1	226	22	19	15	41	1.90
32594593--32594667	24	3.2	24	68	11	66	25	24	9	41	1.84
32600383--32600423	17	2.4	17	95	0	73	36	14	19	29	1.92
32628603--32628644	20	2.1	20	100	0	84	47	7	14	30	1.71
32636331--32636379	25	2.0	24	95	0	80	24	20	14	38	1.90
32638847--32638890	18	2.5	18	96	3	81	45	4	11	38	1.61
32641795--32642000	51	4.0	51	94	1	342	30	14	25	29	1.95
32644256--32644448	56	3.4	56	86	0	260	29	13	24	32	1.94
32650470--32650804	110	3.0	110	99	0	661	34	10	7	47	1.67
32652758--32652909	27	5.6	27	91	3	223	27	13	28	30	1.94
32652758--32652909	55	2.8	55	91	0	232	27	13	28	30	1.94
32655063--32655096	17	2.0	17	94	0	59	29	29	2	38	1.72
32656222--32656366	74	2.0	74	84	0	191	22	22	35	20	1.96
32659777--32659801	13	1.9	13	100	0	50	40	40	12	8	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32663270--32663328	29	2.0	29	100	0	118	27	10	20	42	1.84
32666359--32666470	49	2.3	49	81	3	127	30	23	25	20	1.98
32666225--32666532	142	2.2	142	81	6	349	27	20	27	24	1.99
32666177--32666532	46	7.5	49	73	11	174	28	20	27	23	1.99
32671942--32671977	18	2.0	18	100	0	72	55	22	0	22	1.44
32686512--32686570	29	2.0	29	96	0	109	33	6	28	30	1.83
32689547--32689774	48	4.9	48	77	7	243	28	25	19	26	1.99
32702089--32702133	17	2.5	17	85	7	54	55	2	2	40	1.24
32708009--32708089	33	2.5	33	83	0	99	17	16	43	23	1.88
32709607--32710449	276	3.1	276	100	0	1686	45	12	10	31	1.76
32712616--32712718	21	4.9	21	68	22	65	64	1	4	29	1.25
32712950--32713017	19	3.5	19	82	9	75	27	1	1	69	1.06
32714394--32714420	3	9.0	3	100	0	54	33	0	0	66	0.92
32716767--32716816	7	7.1	7	82	14	59	72	2	22	4	1.12
32716768--32716822	29	1.9	29	88	3	85	74	1	20	3	1.06
32720187--32720422	40	5.9	40	80	3	154	31	22	13	32	1.93
32724818--32724849	16	2.0	16	93	0	55	43	9	6	40	1.62
32728077--32728103	14	1.9	14	100	0	54	48	14	7	29	1.71
32731137--32731168	16	2.0	16	93	0	55	15	43	25	15	1.86
32733390--32733493	55	1.9	55	80	7	122	23	28	31	16	1.96
32751796--32751835	20	2.0	20	100	0	80	25	5	25	45	1.73
32755677--32755901	40	5.6	40	80	8	242	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32755677--32755901	120	1.9	120	81	10	280	26	22	26	24	2.00
32763361--32763506	40	3.7	40	90	0	229	26	26	26	21	2.00
32763577--32763676	50	2.0	50	98	0	191	35	15	16	34	1.89
32767363--32767422	25	2.3	25	83	16	70	43	3	1	51	1.28
32769348--32769376	10	2.9	10	100	0	58	6	10	0	82	0.83
32774231--32774279	8	6.1	8	78	7	55	42	2	0	55	1.11
32781510--32781685	46	3.8	45	77	12	187	22	21	27	28	1.99
32781506--32781677	93	1.8	93	92	0	290	22	21	28	27	1.99
32783830--32783970	72	2.0	72	95	0	255	39	19	3	38	1.69
32784183--32784278	48	2.0	48	95	0	174	33	27	3	36	1.73
32784362--32784410	8	6.1	8	78	7	55	42	2	0	55	1.11
32784591--32784676	40	2.2	40	97	0	163	47	13	1	37	1.51
32785064--32785129	25	2.6	25	77	13	73	36	16	25	21	1.94
32786437--32786499	32	2.0	32	84	6	83	41	7	6	44	1.59
32790971--32791129	43	3.7	43	74	10	137	29	27	18	24	1.98
32802767--32803638	40	21.8	40	97	0	1604	25	31	18	24	1.97
32806553--32806592	21	1.9	21	85	10	55	30	20	20	30	1.97
32819106--32819235	47	2.8	47	81	5	131	24	28	19	27	1.98
32824022--32824268	126	2.0	127	89	0	379	30	18	20	30	1.96
32824526--32824592	34	1.9	35	90	3	109	23	38	4	32	1.75
32824574--32824598	13	1.9	13	100	0	50	32	40	4	24	1.73
32827591--32827734	43	3.3	42	84	5	171	29	16	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32836094--32836122	2	15.0	2	92	7	51	48	0	0	51	1.00
32840449--32840483	7	4.7	7	86	13	52	0	11	2	85	0.69
32840451--32840480	16	1.9	16	93	6	53	0	13	3	83	0.77
32843402--32843542	39	3.7	37	69	17	101	43	1	5	48	1.35
32843401--32843565	78	2.1	76	86	8	235	42	1	4	50	1.31
32843527--32843562	18	2.0	18	100	0	72	33	0	0	66	0.92
32843553--32843610	13	4.3	13	79	16	64	41	1	0	56	1.09
32843531--32843570	18	2.2	18	86	0	53	42	0	0	57	0.98
32843599--32843665	22	3.1	21	77	8	64	44	1	2	50	1.26
32843887--32843922	16	2.2	16	100	0	72	38	36	0	25	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290