genome.fa.s7.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  165  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56587007--56587363	27	13.3	27	87	0	473	33	19	21	25	1.97
56587793--56587854	22	2.8	22	85	7	81	22	22	20	33	1.97
56588012--56588086	27	2.8	27	89	2	107	18	24	21	36	1.95
56588252--56588364	6	18.3	6	74	15	97	18	18	15	47	1.82
56588223--56588364	31	4.5	31	91	0	203	20	16	13	49	1.79
56588240--56588389	62	2.4	62	85	3	196	20	17	14	48	1.81
56601013--56601141	63	2.0	65	84	6	172	31	16	29	22	1.96
56605237--56605312	34	2.2	34	83	0	98	30	22	21	26	1.99
56609036--56609122	42	2.0	43	97	2	167	44	13	31	10	1.78
56610017--56610299	47	5.9	47	91	2	422	32	7	29	29	1.85
56610025--56610299	96	2.9	96	91	1	437	33	7	29	29	1.85
56610417--56610495	37	2.1	37	86	4	106	25	20	29	25	1.99
56615325--56615362	20	1.9	20	100	0	76	18	10	36	34	1.85
56615922--56615977	9	6.3	9	76	16	55	14	10	0	75	1.06
56617531--56617625	45	2.1	46	90	2	147	24	22	25	28	1.99
56617752--56617777	6	4.3	6	100	0	52	30	0	0	69	0.89
56623341--56623498	79	2.0	79	98	0	307	39	8	25	25	1.85
56627108--56627446	67	5.2	64	77	8	335	23	28	15	32	1.95
56627136--56627446	130	2.4	130	96	2	559	23	28	15	32	1.95
56628156--56628216	30	2.0	30	83	0	77	31	22	8	37	1.84
56637723--56638058	40	8.5	40	93	2	538	24	23	27	24	2.00
56646024--56646201	40	4.5	40	83	6	193	23	23	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56646214--56646321	55	2.0	55	98	0	207	32	20	18	28	1.96
56662471--56662631	80	2.0	80	97	0	304	42	16	21	19	1.89
56690369--56690411	20	2.3	18	81	14	52	41	0	20	37	1.53
56691061--56691283	46	4.7	48	77	6	213	30	19	26	23	1.98
56691067--56691283	94	2.3	94	86	2	292	30	19	26	23	1.98
56691251--56691424	93	1.8	97	81	9	225	25	17	27	29	1.98
56693815--56693896	17	4.8	17	76	0	74	45	17	8	29	1.78
56693815--56693896	34	2.4	34	75	0	83	45	17	8	29	1.78
56694549--56694617	36	1.9	36	84	0	93	40	18	8	31	1.81
56696668--56696890	46	4.8	46	75	13	156	24	30	17	27	1.97
56701662--56701968	47	6.6	46	72	11	207	28	19	29	23	1.98
56701660--56701829	46	3.7	45	79	9	198	25	21	30	22	1.99
56701660--56701968	140	2.2	139	80	10	337	28	19	29	23	1.98
56711706--56712016	47	6.7	46	69	11	195	27	20	27	23	1.99
56711706--56711915	92	2.3	94	81	5	239	27	20	28	23	1.99
56715717--56715941	49	4.5	49	85	2	279	26	17	26	28	1.98
56715715--56715941	99	2.3	100	86	2	305	26	18	26	28	1.98
56718641--56718680	7	5.7	7	100	0	80	42	12	0	45	1.42
56721608--56721703	32	2.9	33	81	10	115	26	25	23	25	2.00
56726571--56726682	41	2.7	42	81	10	115	28	27	17	25	1.98
56726608--56726713	41	2.5	42	80	7	115	33	26	16	24	1.96
56726650--56726740	45	2.0	44	81	6	103	34	21	16	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56731134--56731820	126	5.5	126	89	1	1013	27	18	16	37	1.92
56731946--56732018	17	4.4	17	79	6	87	52	30	0	17	1.46
56731943--56732018	32	2.3	34	86	6	104	53	28	0	17	1.43
56731969--56732024	15	3.6	15	77	22	62	50	32	0	17	1.47
56731841--56732318	161	3.0	159	82	8	617	42	21	2	33	1.65
56732115--56732148	16	2.3	14	90	10	50	50	32	5	11	1.63
56732271--56732327	16	3.5	17	81	9	75	52	35	0	12	1.39
56732308--56732345	16	2.3	17	90	4	60	55	36	0	7	1.29
56733280--56733332	26	2.0	26	100	0	106	22	18	15	43	1.87
56737889--56737936	20	2.3	20	89	3	78	50	10	14	25	1.74
56739849--56739882	16	2.1	16	88	0	50	47	0	11	41	1.40
56743772--56743806	17	2.1	17	100	0	70	51	11	17	20	1.75
56751854--56752031	40	4.5	39	85	4	198	26	20	27	25	1.99
56751860--56752031	80	2.2	79	85	3	229	25	21	27	25	1.99
56751887--56752064	79	2.2	80	82	3	200	25	21	28	24	1.99
56759060--56759242	40	4.6	39	81	6	170	24	20	27	26	1.99
56759096--56759277	79	2.3	80	79	3	190	26	20	27	25	1.99
56763408--56763528	46	2.6	46	82	5	145	28	20	27	23	1.99
56763411--56763678	49	5.7	49	74	9	198	27	21	27	23	1.99
56763402--56763720	142	2.2	140	82	7	369	26	20	27	25	1.99
56765705--56765879	60	2.9	61	79	11	191	28	25	19	27	1.99
56765869--56765924	19	2.8	20	81	2	60	33	26	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56766470--56766863	196	2.0	196	100	0	788	26	26	15	31	1.96
56783548--56783587	19	2.1	19	85	0	53	62	12	2	22	1.42
56784125--56784156	16	1.9	17	93	6	57	75	15	0	9	1.05
56785938--56785983	22	2.0	23	87	4	67	60	0	8	30	1.26
56786633--56786675	21	2.0	21	100	0	86	23	13	34	27	1.93
56788384--56788462	41	1.9	42	82	7	99	30	20	27	21	1.98
56788370--56788517	40	3.6	41	74	5	138	27	20	29	22	1.99
56790500--56790670	93	1.8	93	96	0	315	28	29	21	21	1.98
56790492--56790667	46	3.8	46	80	12	225	28	28	21	21	1.98
56793931--56794108	27	6.6	27	83	5	180	29	28	15	26	1.96
56793952--56794107	82	1.9	81	86	3	224	28	28	16	26	1.97
56797490--56797532	19	2.1	19	83	12	50	9	9	20	60	1.55
56805743--56805817	30	2.5	30	88	0	105	21	29	33	16	1.95
56805743--56805830	30	2.9	30	86	0	95	19	27	36	17	1.94
56806191--56806228	8	4.8	8	83	9	51	26	0	0	73	0.83
56806180--56806228	23	2.1	23	85	7	64	26	4	0	69	1.06
56806191--56806241	15	3.1	17	75	18	54	27	0	0	72	0.85
56806196--56806247	25	2.1	24	89	10	79	26	0	0	73	0.84
56807880--56807933	26	2.1	26	100	0	108	42	7	7	42	1.61
56809185--56809547	48	7.6	48	73	10	223	26	19	28	25	1.99
56809185--56809396	94	2.3	94	85	6	270	28	18	27	25	1.98
56809416--56809545	49	2.6	49	81	6	147	27	21	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56810299--56810469	83	2.1	83	93	0	288	25	22	29	23	1.99
56810329--56810501	83	2.1	83	84	2	222	26	22	28	22	1.99
56817863--56818245	40	9.6	40	92	2	565	24	20	27	27	1.99
56825203--56825505	40	7.6	40	91	2	405	25	20	27	27	1.99
56849024--56849114	27	3.4	27	75	0	92	35	19	23	21	1.96
56850575--56850665	27	3.4	27	75	0	92	35	19	23	21	1.96
56855005--56855191	40	4.7	40	89	0	257	18	21	27	32	1.97
56860351--56860394	6	7.2	6	97	2	79	81	0	0	18	0.68
56876850--56877027	27	6.6	27	83	3	205	26	15	28	29	1.96
56876851--56877006	82	1.9	81	88	3	233	26	15	28	29	1.96
56876847--56877027	82	2.2	81	83	2	229	27	15	27	29	1.96
56897235--56897349	43	2.7	43	79	0	122	27	26	17	28	1.97
56905392--56905785	197	2.0	197	100	0	788	30	12	25	31	1.92
56906546--56906596	25	2.0	25	96	0	93	11	15	21	50	1.76
56906824--56906916	42	2.2	42	98	1	177	30	11	25	32	1.92
56912946--56913345	200	2.0	200	99	0	791	26	24	13	36	1.92
56915120--56915343	40	5.7	40	84	6	253	25	27	21	25	1.99
56915120--56915343	79	2.8	80	84	7	253	25	27	21	25	1.99
56924697--56924737	7	5.9	7	100	0	82	43	29	12	14	1.82
56925624--56925667	21	2.1	21	100	0	88	27	18	13	40	1.88
56928596--56928683	43	2.0	43	83	12	110	21	15	31	30	1.95
56930425--56930455	16	1.9	16	93	0	53	41	0	22	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56936706--56936737	8	4.0	8	91	0	55	46	25	25	3	1.67
56936976--56937032	28	2.0	28	96	0	105	38	22	7	31	1.81
56936981--56937045	28	2.3	28	91	0	103	36	26	7	29	1.84
56937155--56937244	28	3.2	27	79	7	92	21	24	22	32	1.98
56937179--56937244	27	2.4	28	84	5	80	19	25	22	31	1.98
56945458--56945523	28	2.4	28	92	0	105	33	27	9	30	1.88
56945629--56945718	28	3.2	27	85	7	119	20	24	23	32	1.98
56945629--56945743	55	2.1	56	83	8	146	19	24	21	34	1.96
56952232--56952444	27	7.9	27	83	2	230	37	14	22	26	1.92
56955579--56955699	39	3.1	39	97	0	224	23	31	24	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290