genome.fa.s7.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  198  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68293437--68293472	18	2.0	18	100	0	72	33	22	11	33	1.89
68295138--68295276	38	3.7	38	90	1	199	20	20	25	33	1.97
68316879--68317040	56	2.9	55	92	2	254	33	25	14	25	1.95
68319291--68319405	43	2.7	42	78	7	135	24	19	25	31	1.98
68320861--68321038	27	6.6	27	84	3	205	29	28	15	26	1.96
68320882--68321037	82	1.9	81	88	3	233	29	28	15	26	1.96
68329051--68329228	27	6.6	27	84	3	205	29	28	15	26	1.96
68329072--68329227	82	1.9	81	88	3	233	29	28	15	26	1.96
68333212--68333301	28	3.3	28	90	4	139	20	21	23	35	1.96
68333211--68333325	27	4.3	26	89	5	140	20	21	21	35	1.96
68343534--68343706	46	3.7	47	75	13	178	31	28	18	21	1.97
68346308--68346551	30	8.1	31	75	7	207	38	12	25	23	1.90
68346264--68346475	90	2.3	90	89	5	313	37	11	24	25	1.90
68346311--68346538	90	2.5	91	83	7	268	39	11	25	23	1.88
68346308--68346551	60	4.1	59	82	5	267	38	12	25	23	1.90
68352239--68352298	27	2.3	26	85	2	75	35	20	23	21	1.96
68353264--68353524	27	9.7	27	85	0	351	40	21	7	31	1.80
68353257--68353524	54	5.0	54	88	0	401	39	21	7	31	1.81
68353257--68353524	108	2.5	108	96	0	491	39	21	7	31	1.81
68353264--68353577	27	11.6	27	79	5	186	40	21	7	30	1.81
68353619--68353861	27	9.0	27	85	0	290	37	18	19	23	1.94
68353619--68353861	81	3.0	81	89	0	344	37	18	19	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68354055--68354106	27	2.0	26	84	3	68	17	26	21	34	1.95
68362530--68362590	30	2.0	30	83	0	77	31	22	8	37	1.84
68362542--68363815	636	2.0	636	98	0	2476	31	20	11	35	1.89
68369971--68370049	42	1.9	40	85	14	108	20	40	18	20	1.92
68376839--68377070	49	4.7	49	81	3	266	29	26	18	25	1.98
68377317--68377370	27	2.0	27	85	0	72	38	14	7	38	1.75
68379844--68379892	15	3.3	15	77	5	64	57	12	16	14	1.66
68379829--68379909	29	2.8	29	92	1	126	56	13	16	13	1.67
68379888--68379926	15	2.6	15	83	0	60	58	17	12	10	1.61
68382900--68383158	46	5.6	47	70	15	198	30	28	18	22	1.97
68382907--68383158	93	2.7	93	90	2	400	30	28	18	22	1.97
68382954--68383119	47	3.6	47	74	12	171	30	28	16	23	1.96
68393801--68393848	25	2.0	24	84	12	62	25	22	20	31	1.98
68393898--68393964	20	3.3	20	93	0	116	32	20	11	34	1.90
68393898--68393953	11	5.5	11	71	16	57	32	19	12	35	1.89
68393999--68394047	25	2.0	25	87	0	71	26	16	24	32	1.96
68397622--68397654	16	2.1	16	94	0	57	39	9	12	39	1.74
68399306--68399568	48	5.5	47	82	7	237	34	28	17	19	1.95
68403321--68403373	23	2.4	22	76	20	56	9	18	1	69	1.25
68405735--68405794	22	2.7	23	73	19	63	66	6	0	26	1.16
68405744--68405777	4	8.0	4	90	9	50	73	2	0	23	0.97
68411096--68411368	48	5.7	48	82	5	293	34	28	18	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68411106--68411368	144	1.8	144	81	4	334	34	28	18	18	1.95
68414277--68414348	25	3.1	23	76	19	78	43	1	6	48	1.38
68414277--68414336	20	2.7	21	80	15	68	43	0	6	50	1.28
68414836--68415005	86	2.0	85	81	5	200	37	18	9	34	1.84
68415344--68415403	20	3.0	19	75	7	57	33	3	0	63	1.11
68415344--68415403	19	3.0	20	73	11	61	33	3	0	63	1.11
68416556--68416580	12	2.1	12	100	0	50	20	24	24	32	1.98
68417024--68417141	58	2.0	58	96	0	218	33	20	12	33	1.90
68419352--68419449	48	2.0	48	100	0	196	44	18	18	18	1.87
68425911--68425968	27	2.2	26	81	3	62	68	0	25	5	1.10
68429136--68429242	43	2.5	43	86	1	144	24	16	23	35	1.95
68431609--68431970	46	7.8	45	72	13	270	21	18	29	30	1.97
68431655--68431916	47	5.6	47	73	12	261	22	17	30	30	1.97
68431605--68431963	93	3.9	93	96	0	637	21	18	30	29	1.97
68433399--68433694	46	6.4	46	95	0	538	23	25	14	35	1.93
68441417--68441528	27	4.2	26	82	7	125	37	21	24	16	1.94
68441417--68441528	54	2.1	54	88	3	163	37	21	24	16	1.94
68445288--68445338	16	3.2	16	73	15	52	45	7	13	33	1.73
68447398--68447560	40	4.1	40	80	3	159	25	28	22	23	1.99
68447635--68448292	28	23.5	28	98	0	1237	32	28	13	25	1.94
68449473--68449499	9	3.0	9	100	0	54	33	33	0	33	1.58
68449491--68449538	14	3.4	14	97	0	87	35	29	6	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68449464--68449538	28	2.5	30	85	8	91	34	30	5	29	1.80
68451026--68451070	24	1.9	24	95	4	83	26	0	6	66	1.16
68453648--68453697	22	2.3	22	86	3	66	24	28	16	32	1.96
68468601--68468917	19	16.6	19	99	0	616	36	10	16	36	1.82
68474474--68474527	11	4.7	12	75	15	60	81	0	16	1	0.78
68474474--68474529	7	8.4	7	75	16	57	82	0	16	1	0.76
68474474--68474529	13	4.1	14	79	9	55	82	0	16	1	0.76
68474474--68474530	20	2.9	20	85	10	73	80	0	15	3	0.84
68475479--68476172	84	8.3	84	91	3	1089	29	22	22	24	1.99
68475988--68476125	41	3.3	41	67	13	111	30	20	21	27	1.98
68476947--68477043	19	5.2	19	88	9	146	37	10	17	35	1.84
68476947--68477043	35	2.6	37	87	11	135	37	10	17	35	1.84
68477027--68477141	55	2.1	54	98	1	221	30	9	15	44	1.79
68478652--68478702	16	3.0	17	74	8	50	49	0	0	50	1.00
68482869--68482946	29	2.7	28	84	11	104	25	15	30	28	1.96
68482899--68483225	173	1.9	174	94	0	584	30	14	24	30	1.94
68484057--68484178	62	2.0	62	95	0	217	37	9	19	32	1.85
68487723--68487833	40	2.7	40	84	6	134	22	24	27	25	2.00
68493508--68493692	79	2.3	81	82	7	218	24	22	27	25	2.00
68493509--68493692	40	4.6	40	80	9	198	25	22	27	25	2.00
68493561--68493725	79	2.1	79	82	6	192	26	20	27	25	1.99
68502290--68502345	16	3.2	17	75	10	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68505287--68505339	27	2.0	27	88	3	81	30	16	16	35	1.92
68505671--68505786	40	2.9	40	81	0	142	31	23	20	25	1.98
68505829--68505937	40	2.7	40	84	0	137	27	21	24	26	1.99
68505997--68506066	35	2.0	35	88	0	104	31	17	20	31	1.95
68505678--68506084	151	2.7	152	80	7	427	29	19	21	28	1.98
68506453--68506508	22	2.6	21	83	5	76	21	0	28	50	1.49
68506471--68506528	14	4.1	14	80	6	55	20	0	37	41	1.53
68506452--68506510	7	8.3	7	81	3	64	20	0	27	52	1.47
68506507--68506564	21	2.7	21	78	2	62	17	0	48	34	1.47
68506478--68506592	7	16.4	7	73	10	56	19	0	38	42	1.51
68506960--68507043	40	2.1	40	86	4	116	47	16	17	17	1.83
68507214--68507267	18	3.0	18	77	0	54	12	29	0	57	1.36
68513957--68514034	29	2.7	28	84	11	104	25	15	30	28	1.96
68513987--68514313	173	1.9	174	92	0	548	30	14	24	30	1.95
68528821--68528846	8	3.2	8	100	0	52	30	0	23	46	1.53
68546302--68546387	43	2.0	43	97	0	163	31	13	22	32	1.93
68547726--68547754	15	2.0	15	93	6	51	34	6	0	58	1.25
68548143--68548191	18	2.7	18	80	0	62	6	32	22	38	1.79
68548344--68548392	25	1.9	25	87	4	71	38	2	2	57	1.22
68553967--68554045	31	2.5	31	91	0	131	25	24	18	31	1.98
68554069--68554160	42	2.2	42	90	0	139	34	20	14	30	1.92
68554298--68554428	26	5.2	26	86	2	180	28	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68554478--68554564	20	4.3	20	89	2	131	31	19	9	40	1.83
68555273--68555336	27	2.4	27	81	5	76	21	25	17	35	1.95
68555368--68555520	27	5.7	27	77	6	148	29	7	22	40	1.82
68555370--68555520	54	2.8	54	86	0	185	28	7	22	41	1.82
68555559--68555643	27	3.1	27	89	0	107	43	9	21	25	1.82
68555594--68555834	27	8.9	27	80	7	121	33	8	21	37	1.83
68555633--68555820	27	6.9	26	82	7	151	30	7	21	39	1.82
68555396--68555834	54	8.1	54	72	7	208	32	9	21	37	1.85
68555784--68555906	54	2.3	54	81	0	138	36	7	22	33	1.82
68555695--68555845	81	1.9	81	80	2	178	30	6	22	40	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290