genome.fa.s7.2.7.7.80.10.50.1000.273.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  273  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94183730--94184003	80	3.4	79	79	10	265	31	9	18	40	1.84
94199777--94199801	12	2.1	12	100	0	50	32	16	16	36	1.90
94203177--94203685	48	10.8	48	82	5	581	36	27	17	19	1.94
94205697--94205896	46	4.4	45	73	8	143	32	21	19	28	1.97
94212359--94212560	55	3.8	54	75	11	179	36	17	24	21	1.95
94212750--94212780	16	1.9	16	93	0	53	41	0	22	35	1.54
94215867--94216033	46	3.6	47	79	10	168	29	17	28	24	1.98
94227214--94227270	29	1.9	30	89	3	89	22	24	19	33	1.97
94231945--94232115	47	3.7	47	80	9	172	26	19	28	24	1.99
94231900--94232115	46	4.6	48	78	11	168	26	19	29	24	1.98
94248323--94248347	5	5.0	5	100	0	50	60	0	0	40	0.97
94250959--94251024	30	2.2	30	94	0	114	19	22	28	28	1.98
94254508--94254550	21	2.0	21	82	8	52	46	4	11	37	1.61
94255955--94256121	39	4.3	39	91	3	264	31	20	26	21	1.98
94255955--94256147	78	2.5	78	86	5	230	31	21	26	21	1.98
94280048--94280085	8	4.6	8	93	3	58	15	0	26	57	1.38
94283668--94283746	37	2.1	37	86	4	106	25	31	18	24	1.98
94283865--94284272	47	8.7	47	90	5	600	29	29	8	32	1.86
94283955--94284228	86	3.0	86	88	10	431	29	29	8	32	1.86
94283907--94284272	133	2.6	134	91	6	556	29	29	8	32	1.86
94284041--94284272	49	4.8	49	95	3	418	30	28	8	33	1.86
94289546--94289755	40	5.2	40	91	0	348	29	20	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94291930--94291981	25	2.1	25	85	7	70	30	32	7	28	1.85
94292144--94292388	40	6.1	40	88	0	373	24	26	22	26	2.00
94293070--94293308	119	2.0	119	99	0	469	31	21	20	26	1.98
94293722--94293800	37	2.1	37	88	0	113	25	31	18	24	1.98
94293919--94294475	47	11.7	47	95	1	931	29	29	8	31	1.86
94297615--94297786	46	3.7	45	75	10	168	22	18	28	30	1.97
94300719--94300798	15	5.4	15	77	7	83	11	17	13	57	1.65
94300710--94300798	45	2.0	44	84	6	117	11	15	15	57	1.65
94311457--94311513	30	1.9	30	88	0	87	12	19	12	56	1.67
94312801--94312943	72	2.0	72	98	0	277	35	7	17	39	1.78
94313985--94314160	46	3.8	45	79	10	203	21	21	28	28	1.98
94313981--94314152	93	1.8	93	93	0	299	21	21	29	27	1.99
94316441--94316635	101	1.9	101	83	6	252	33	11	20	34	1.88
94318088--94318260	33	5.4	32	76	8	138	19	21	17	40	1.91
94318092--94318238	64	2.3	65	79	9	160	21	21	18	38	1.93
94318088--94318293	97	2.1	97	78	5	220	20	21	16	40	1.91
94318239--94318306	33	2.1	33	85	0	91	23	23	13	39	1.90
94328171--94328275	39	2.6	39	86	5	122	24	22	27	24	2.00
94328131--94328275	40	3.7	40	81	12	165	24	23	27	24	2.00
94328132--94328294	40	4.1	39	79	10	100	25	23	28	23	2.00
94328131--94328281	79	1.9	80	82	6	191	25	23	27	23	2.00
94339276--94339304	14	2.0	15	93	6	51	48	13	6	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94349604--94349865	39	6.7	40	87	7	337	25	22	27	24	2.00
94363930--94364148	47	4.7	47	78	8	239	24	29	21	24	1.99
94363880--94364192	94	3.3	92	75	7	270	23	29	21	25	1.99
94379310--94379342	12	2.8	12	90	0	57	15	24	36	24	1.93
94379773--94379799	14	1.9	14	100	0	54	59	29	0	11	1.32
94383895--94384081	50	3.7	50	81	3	198	28	29	17	24	1.97
94383895--94384081	101	1.9	99	85	2	257	28	29	17	24	1.97
94384725--94384784	30	2.0	30	87	6	86	28	26	8	36	1.85
94399096--94399271	50	3.5	51	82	4	189	25	17	27	29	1.98
94400217--94400409	73	2.6	73	86	3	264	27	20	22	29	1.98
94400217--94400409	24	8.0	24	85	2	244	27	20	22	29	1.98
94400462--94400510	16	3.1	16	85	11	66	30	18	14	36	1.90
94400467--94400521	20	2.7	20	88	2	83	32	21	10	34	1.89
94407731--94407923	24	8.0	24	88	2	271	29	20	21	29	1.98
94412696--94412734	15	2.5	15	91	4	60	15	12	15	56	1.68
94411967--94414291	778	3.0	778	90	3	3498	27	12	21	38	1.89
94413474--94413512	15	2.5	15	91	4	60	15	12	15	56	1.68
94414242--94414280	15	2.5	15	91	4	60	15	12	15	56	1.68
94412184--94414500	768	3.0	767	90	3	3469	26	12	20	40	1.88
94419156--94419181	12	2.2	12	100	0	52	34	34	7	23	1.83
94422003--94422076	34	2.2	34	90	2	114	32	20	17	29	1.95
94424895--94424998	27	3.8	26	85	8	120	33	19	24	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94424887--94425001	54	2.1	54	84	6	153	37	20	21	20	1.95
94428333--94428637	40	7.6	40	90	0	430	25	29	20	23	1.99
94430561--94430652	39	2.3	39	88	5	132	25	28	22	23	2.00
94430542--94430705	40	4.1	40	80	10	176	24	27	23	25	2.00
94431592--94431748	85	1.8	85	100	0	314	26	28	8	36	1.86
94436490--94436519	14	2.1	14	93	0	51	33	0	46	20	1.51
94437190--94437215	12	2.2	12	100	0	52	61	7	23	7	1.49
94438429--94438512	30	2.8	30	90	0	141	32	11	26	29	1.92
94448302--94448364	28	2.2	28	83	5	83	26	26	12	33	1.93
94454987--94455046	28	2.2	26	77	11	66	26	26	11	35	1.91
94455001--94455072	28	2.6	28	88	0	99	29	27	12	30	1.93
94457526--94457685	43	3.7	42	77	8	144	23	16	25	34	1.95
94462363--94462392	14	2.1	14	93	0	51	46	10	0	43	1.37
94471282--94471316	17	2.0	17	88	5	52	37	0	8	54	1.31
94476541--94476603	16	3.9	16	73	8	65	47	15	23	12	1.80
94476551--94476585	8	4.4	8	96	0	61	45	11	22	20	1.82
94476541--94476603	24	2.6	24	75	9	74	47	15	23	12	1.80
94476541--94476595	8	6.9	8	83	6	58	47	14	25	12	1.80
94476840--94476946	29	3.8	27	75	13	90	26	14	32	27	1.94
94479825--94479894	34	2.1	34	100	0	140	17	11	27	44	1.82
94480943--94480984	22	2.0	22	86	13	61	42	11	4	40	1.63
94481213--94481398	74	2.5	74	83	0	210	35	20	17	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94481268--94481441	74	2.4	74	77	1	179	38	22	15	23	1.92
94484520--94484560	16	2.6	16	92	0	64	46	9	24	19	1.80
94484778--94484855	29	2.7	29	84	5	88	30	14	26	28	1.95
94484790--94484894	29	3.6	29	82	5	113	25	16	30	27	1.96
94489347--94489486	70	2.0	70	100	0	280	44	17	8	30	1.78
94490435--94490520	28	3.0	29	83	3	113	30	26	15	27	1.96
94494887--94494973	28	3.1	28	88	6	122	26	29	14	28	1.95
94495187--94495229	16	2.6	17	82	10	54	9	23	18	48	1.76
94498890--94498929	20	2.0	19	85	9	53	62	7	2	27	1.35
94505822--94505951	66	1.9	67	84	10	174	33	16	30	20	1.94
94510019--94510100	29	2.8	30	90	5	125	25	14	30	29	1.95
94512998--94513030	16	2.1	16	94	0	57	48	30	6	15	1.69
94514493--94514576	29	2.9	30	87	7	129	26	13	30	29	1.93
94519213--94519398	40	4.7	40	78	9	175	24	21	27	26	1.99
94520520--94521035	258	2.0	257	97	0	978	28	29	20	21	1.98
94527032--94527214	79	2.3	81	84	7	232	24	22	27	25	2.00
94527033--94527216	40	4.6	40	83	9	216	23	22	28	25	2.00
94527085--94527249	79	2.1	79	84	6	210	25	21	27	25	1.99
94528965--94529068	42	2.5	42	85	1	138	17	43	21	18	1.88
94531454--94531565	43	2.6	43	85	1	154	29	17	20	32	1.96
94534572--94534608	18	2.1	18	100	0	74	21	21	0	56	1.42
94534574--94534611	9	4.3	9	84	15	53	18	21	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94540770--94540802	8	4.1	8	100	0	66	12	0	39	48	1.40
94548514--94548545	15	2.1	16	94	5	57	25	18	6	50	1.70
94551202--94551239	15	2.5	15	91	0	58	36	26	13	23	1.91
94557005--94557073	24	2.7	26	82	8	81	21	23	21	33	1.97
94564451--94564489	19	2.1	19	85	0	51	71	7	5	15	1.26
94564966--94565080	55	2.1	56	82	8	137	34	22	24	18	1.96
94564991--94565080	27	3.2	27	81	7	101	32	24	24	18	1.97
94565186--94565250	28	2.3	28	94	0	112	30	7	27	33	1.85
94565497--94565528	8	4.0	8	91	0	55	3	25	25	46	1.67
94566981--94567069	27	3.2	27	82	7	99	33	23	21	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290