genome.fa.s7.2.7.7.80.10.50.1000.289.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  289  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99809708--99810044	47	7.1	47	93	2	584	29	28	8	33	1.87
99809708--99810044	96	3.5	94	95	2	584	29	28	8	33	1.87
99822827--99822990	47	3.5	47	96	0	301	31	13	29	25	1.93
99823009--99823129	46	2.6	46	85	0	161	35	9	29	25	1.87
99824053--99824079	14	1.9	14	100	0	54	37	22	18	22	1.95
99842498--99842671	23	7.3	24	84	5	237	28	20	20	31	1.97
99842502--99842670	47	3.6	47	88	2	241	28	18	21	31	1.97
99842720--99842786	20	3.3	20	93	0	116	32	20	11	34	1.90
99842720--99842775	11	5.5	11	71	16	57	32	19	12	35	1.89
99842823--99842870	25	1.9	25	91	0	78	25	14	25	35	1.94
99847577--99847608	14	2.4	13	90	10	55	18	6	12	62	1.50
99882169--99882441	134	2.0	134	99	0	537	27	13	25	33	1.93
99885502--99885535	17	2.0	17	94	0	59	50	0	17	32	1.47
99886677--99886725	22	2.2	20	77	19	53	20	4	26	48	1.67
99891763--99891821	20	3.0	20	82	0	64	30	10	13	45	1.76
99900229--99900426	27	7.3	27	89	2	281	27	25	8	37	1.85
99900229--99900426	81	2.4	81	92	1	317	27	25	8	37	1.85
99900418--99900608	27	7.1	26	79	10	147	39	22	10	27	1.87
99900425--99900580	54	2.9	54	85	3	181	39	20	10	28	1.86
99900458--99900607	81	1.9	81	86	8	216	42	22	8	28	1.81
99900458--99900663	54	3.8	54	82	5	184	41	20	8	29	1.81
99900586--99900671	27	3.1	27	78	17	95	40	15	9	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99900712--99900785	27	2.7	27	76	12	71	37	20	20	21	1.94
99900725--99900789	27	2.4	27	82	5	78	35	18	24	21	1.96
99902518--99902567	16	3.3	15	89	10	75	48	0	6	46	1.27
99903020--99903064	15	3.2	14	87	9	65	73	0	6	20	1.05
99904071--99904125	23	2.5	23	74	14	62	10	16	36	36	1.84
99910179--99910227	16	3.2	15	88	11	73	48	0	6	44	1.27
99910672--99910729	15	4.1	15	82	6	68	74	3	6	15	1.17
99911752--99911798	23	2.0	23	88	8	69	10	10	38	40	1.75
99917862--99917896	16	2.2	16	89	0	52	40	0	11	48	1.39
99918354--99918390	15	2.5	15	91	4	58	72	0	16	10	1.10
99923528--99923560	17	1.9	17	100	0	66	18	21	12	48	1.80
99935752--99935874	62	2.0	62	90	0	192	33	23	17	25	1.97
99940279--99940365	43	2.0	43	97	0	165	35	24	6	33	1.82
99940291--99940358	21	3.2	21	65	19	50	41	22	7	29	1.80
99947160--99947185	13	2.0	13	100	0	52	15	38	30	15	1.88
99950129--99950448	27	11.8	26	75	10	243	31	10	18	39	1.85
99950129--99950423	54	5.4	54	78	5	308	32	10	18	38	1.85
99950104--99950448	81	4.2	81	78	6	315	31	11	17	39	1.85
99955228--99955254	13	2.1	13	100	0	54	14	25	37	22	1.93
99993333--99993430	24	4.0	24	93	1	160	35	5	38	20	1.75
99996657--99996726	35	2.0	35	88	0	104	28	22	8	40	1.84
99998126--99998219	40	2.3	40	92	0	143	29	18	19	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99998126--99998241	40	2.9	40	87	2	135	31	17	18	32	1.94
99998242--99998348	39	2.6	43	82	13	159	32	12	28	27	1.92
100000162--100000202	20	2.0	22	85	9	59	48	14	4	31	1.65
100010435--100010612	27	6.6	26	82	6	178	26	15	28	29	1.96
100010436--100010591	82	1.9	81	86	3	224	26	16	28	28	1.97
100010432--100010612	82	2.2	81	82	2	220	27	16	27	29	1.97
100010517--100010623	27	3.9	27	85	1	70	26	14	28	30	1.95
100018500--100018677	27	6.6	27	83	3	205	26	15	28	29	1.96
100018501--100018656	82	1.9	81	88	3	233	26	15	28	29	1.96
100018497--100018677	82	2.2	81	83	2	229	27	15	27	29	1.96
100023546--100023712	27	6.2	27	81	5	203	26	20	10	41	1.86
100023546--100023712	81	2.1	81	86	4	239	26	20	10	41	1.86
100023717--100023885	27	6.3	27	84	1	178	37	18	18	25	1.93
100023725--100023875	54	2.8	54	86	1	196	37	18	19	24	1.94
100023716--100023884	81	2.1	81	81	5	207	38	17	18	25	1.92
100024084--100024166	27	3.1	26	87	5	112	19	21	21	37	1.94
100024254--100024312	22	2.7	22	81	0	64	20	25	22	32	1.98
100024477--100024543	27	2.5	27	85	4	82	19	25	19	35	1.95
100024668--100024773	6	17.5	6	71	13	83	19	16	14	50	1.79
100024668--100024790	30	4.1	30	86	3	158	19	16	14	49	1.79
100041960--100042007	17	2.8	17	77	0	51	39	6	6	47	1.54
100044231--100044346	58	2.0	57	96	1	214	37	14	10	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100044982--100045032	6	8.7	6	91	4	86	80	0	1	17	0.81
100044982--100045032	17	2.9	18	91	5	86	80	0	1	17	0.81
100044953--100045045	29	3.2	29	84	6	100	76	1	3	19	0.99
100046959--100047003	21	2.2	20	88	4	63	17	26	26	28	1.98
100053488--100053871	47	8.1	47	94	1	651	31	8	30	29	1.87
100053488--100053871	143	2.7	141	93	2	651	31	8	30	29	1.87
100053488--100053871	190	2.0	190	94	0	678	31	8	30	29	1.87
100056483--100056706	40	5.6	40	86	6	310	25	26	23	24	2.00
100056483--100056706	83	2.8	80	88	4	317	25	26	23	24	2.00
100060451--100060481	15	2.1	15	93	0	53	19	0	25	54	1.44
100061094--100061227	56	2.4	56	100	0	268	29	15	22	32	1.95
100061094--100061255	56	2.9	56	90	3	193	28	16	23	31	1.96
100064004--100064060	26	2.2	26	80	3	60	38	24	8	28	1.85
100070835--100070863	14	2.0	15	93	6	51	27	0	20	51	1.47
100073577--100073681	56	1.9	55	83	13	135	26	17	24	31	1.97
100083712--100083798	39	2.2	39	91	0	138	26	29	21	21	1.99
100088080--100088118	21	1.9	19	85	10	51	35	7	2	53	1.43
100092035--100092243	48	4.4	48	72	4	161	26	23	17	32	1.97
100093006--100093366	180	2.0	180	100	0	722	31	18	11	37	1.87
100100393--100100654	40	6.6	40	88	3	368	25	22	25	25	2.00
100106495--100106574	40	2.0	40	92	0	133	25	25	25	25	2.00
100109555--100110359	40	20.2	40	89	2	1181	24	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100112167--100112191	13	1.9	13	100	0	50	32	16	16	36	1.90
100113684--100113804	47	2.6	47	82	2	145	33	9	32	25	1.87
100117359--100117576	40	5.5	40	90	2	307	23	23	27	25	2.00
100128135--100128223	28	3.1	28	87	4	126	31	21	24	22	1.98
100128329--100128396	28	2.4	28	95	0	118	32	7	26	33	1.84
100138800--100138842	21	2.0	21	100	0	86	23	9	13	53	1.69
100142667--100142721	23	2.5	23	82	8	71	21	12	16	49	1.79
100143630--100143662	8	4.1	8	100	0	66	24	24	0	51	1.48
100146616--100146856	27	8.9	27	80	1	250	26	21	16	36	1.94
100146619--100146864	54	4.6	54	85	2	316	26	20	16	36	1.93
100146848--100147111	27	9.9	27	81	4	268	31	9	19	39	1.84
100146632--100146891	81	3.2	79	77	6	270	26	18	17	37	1.93
100146849--100147111	80	3.3	79	83	5	341	30	9	19	39	1.84
100159672--100159731	15	4.0	14	81	12	66	60	15	10	15	1.60
100167909--100167989	19	4.2	19	81	9	92	53	1	0	45	1.08
100167917--100167989	11	7.2	11	77	17	77	53	1	0	45	1.09
100167943--100168003	30	2.0	29	81	12	70	59	0	3	37	1.14
100168578--100168785	67	3.2	64	76	10	188	32	16	28	22	1.96
100174755--100175620	46	18.8	46	96	2	1562	21	21	28	28	1.99
100178573--100178641	15	4.6	15	83	0	84	11	17	13	57	1.64
100178564--100178651	30	3.0	30	81	8	99	10	17	15	56	1.66
100178783--100178983	101	2.0	100	97	0	375	28	10	23	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100181761--100181924	84	2.0	84	96	0	301	21	21	26	29	1.99
100189354--100189516	82	2.0	82	97	0	308	29	26	10	33	1.90
100196958--100196984	14	1.9	14	100	0	54	55	7	14	22	1.64
100212478--100212568	31	3.0	30	77	4	94	42	15	10	30	1.81
100214342--100214413	20	3.6	21	70	7	60	20	29	13	36	1.92
100214160--100214436	79	3.5	78	83	3	331	17	28	18	36	1.93
100214160--100214419	40	6.6	39	85	2	322	17	27	18	36	1.93
100214971--100215042	20	3.6	19	71	15	65	13	29	19	37	1.90
100218660--100218923	40	6.6	40	87	5	374	28	26	21	23	1.99
100218660--100218923	122	2.2	120	88	6	392	28	26	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290