genome.fa.s7.2.7.7.80.10.50.1000.262.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  262  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90452550--90452616	21	3.3	21	73	23	63	26	34	4	34	1.77
90454588--90454642	26	2.1	26	83	6	67	32	21	21	23	1.98
90466910--90466954	24	1.9	24	86	13	67	37	22	0	40	1.54
90471263--90471333	5	13.2	5	72	19	54	18	5	1	74	1.08
90471292--90471333	5	8.2	5	85	15	59	21	0	0	78	0.75
90471286--90471333	11	4.5	11	84	10	64	18	0	2	79	0.84
90471293--90471333	15	2.7	15	92	7	66	21	0	0	78	0.76
90471283--90471333	26	2.0	26	88	7	77	19	0	1	78	0.85
90471263--90471343	31	2.5	32	78	9	76	17	6	2	74	1.14
90481363--90481541	50	3.7	49	79	12	172	25	29	19	26	1.99
90481363--90481725	46	7.7	49	76	9	305	23	28	19	27	1.99
90481363--90481728	94	3.9	93	76	12	306	24	28	19	27	1.99
90481357--90481725	140	2.6	142	81	9	416	23	28	19	27	1.99
90483781--90484095	27	11.7	26	76	10	269	39	20	9	30	1.85
90483808--90484095	81	3.6	81	83	7	338	39	20	9	30	1.84
90484078--90484138	27	2.3	27	86	8	81	42	6	14	36	1.72
90486185--90486210	9	2.9	9	100	0	52	65	23	0	11	1.25
90488602--90488774	43	4.1	42	80	5	152	27	13	25	34	1.93
90490770--90490861	27	3.4	27	84	0	121	27	21	7	43	1.79
90490893--90491043	27	5.6	27	83	4	162	43	21	7	28	1.79
90490874--90491015	54	2.6	54	83	4	135	42	21	9	27	1.83
90490918--90491130	54	3.9	53	74	11	162	40	18	8	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90490973--90491102	27	4.7	27	79	11	122	42	17	7	32	1.78
90490918--90491129	27	7.8	27	80	8	117	41	18	8	31	1.81
90492033--90492102	25	2.8	25	93	0	113	27	25	22	24	2.00
90492032--90492127	25	3.9	24	81	9	95	28	23	22	25	2.00
90492033--90492127	50	1.9	50	80	8	113	28	24	23	24	2.00
90492249--90492340	42	2.2	42	92	0	148	29	14	21	34	1.93
90492364--90492473	31	3.5	31	97	0	211	29	18	25	27	1.98
90495481--90495511	14	2.2	14	94	0	53	16	0	12	70	1.16
90495518--90495547	13	2.2	14	94	5	53	36	20	0	43	1.52
90510850--90510924	4	18.8	4	97	0	141	49	24	0	26	1.51
90512213--90512250	14	2.9	13	81	11	51	18	13	10	57	1.63
90518053--90518270	46	4.7	46	73	11	153	25	28	18	27	1.98
90520129--90520288	43	3.7	43	73	12	132	33	25	13	27	1.94
90532841--90532901	30	2.0	30	83	0	77	31	22	8	37	1.84
90543069--90543120	27	2.0	26	84	3	68	17	26	21	34	1.95
90543159--90543218	27	2.3	27	82	8	70	20	25	18	36	1.94
90547774--90547954	40	4.6	40	86	3	242	25	26	23	24	2.00
90547803--90547954	80	1.9	80	94	0	268	25	26	23	23	2.00
90550809--90550958	67	2.2	67	81	8	171	32	17	28	21	1.96
90550833--90551016	67	2.8	64	77	8	194	29	17	29	22	1.97
90555599--90555745	47	3.1	47	86	0	195	32	10	29	27	1.90
90555628--90555701	23	3.1	25	62	25	59	29	13	33	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90555715--90556566	48	17.8	48	98	0	1650	36	6	25	31	1.81
90557906--90557945	19	2.1	19	95	0	71	45	5	22	27	1.73
90558075--90558266	40	4.8	40	90	0	285	25	21	28	25	1.99
90560036--90560077	21	2.0	21	85	0	57	69	2	14	14	1.30
90561145--90562043	47	19.1	47	98	0	1690	33	12	27	25	1.92
90561924--90561999	23	3.2	25	62	24	63	28	13	34	23	1.92
90562245--90562316	37	1.9	37	88	5	110	25	19	29	26	1.99
90571841--90571968	46	2.8	46	92	1	213	32	28	19	19	1.96
90577028--90577187	79	2.0	80	92	3	270	29	30	19	21	1.97
90583430--90583531	20	5.1	20	65	9	64	34	18	29	17	1.94
90583430--90583634	40	5.1	40	83	1	232	36	18	29	15	1.92
90583486--90583591	20	5.3	20	65	8	54	35	18	32	13	1.90
90585424--90585527	43	2.4	43	83	0	118	35	22	14	27	1.93
90598972--90599032	30	2.0	30	83	0	77	31	22	8	37	1.84
90601188--90601251	31	2.1	31	87	0	92	17	31	29	21	1.96
90602461--90602491	16	1.9	16	93	0	53	35	22	0	41	1.54
90602458--90602497	20	2.0	20	85	0	53	37	22	0	40	1.54
90602743--90602938	55	3.6	52	75	10	155	21	22	18	36	1.95
90609852--90610029	40	4.5	40	88	5	238	25	28	23	23	2.00
90617847--90618024	40	4.5	40	92	3	272	24	28	24	23	2.00
90622584--90622625	21	2.0	21	90	9	68	26	33	23	16	1.96
90624112--90624302	101	1.9	101	83	7	253	31	12	25	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90633414--90633454	20	2.0	20	95	0	73	21	39	29	9	1.86
90639554--90639731	50	3.6	50	83	3	198	30	27	16	25	1.97
90639984--90640037	27	2.0	27	85	0	72	38	14	7	38	1.75
90648408--90648508	25	4.0	25	75	2	105	23	22	24	28	1.99
90649548--90649573	13	2.0	13	100	0	52	61	7	15	15	1.55
90650078--90650246	41	4.1	41	76	8	130	25	28	21	24	1.99
90650104--90650246	41	3.5	42	81	9	154	25	28	21	23	1.99
90650856--90650925	33	2.1	33	97	0	131	45	17	7	30	1.75
90651866--90651957	43	2.2	42	92	3	150	28	30	10	30	1.91
90658600--90658768	41	4.2	40	76	7	135	26	29	20	23	1.99
90658626--90658768	41	3.5	40	81	5	146	26	29	20	23	1.99
90665691--90665799	37	2.9	37	95	0	191	26	31	19	22	1.98
90666001--90666194	47	4.1	47	89	0	280	26	28	10	33	1.90
90666094--90666165	22	3.1	22	64	24	58	23	29	13	33	1.93
90686134--90687062	40	23.2	40	98	0	1702	25	27	24	22	2.00
90694983--90695916	40	23.4	40	98	0	1703	25	27	24	22	2.00
90699498--90699696	100	2.0	100	97	0	380	27	25	21	25	1.99
90700252--90700458	104	2.0	104	99	0	405	34	20	17	27	1.95
90709754--90709803	22	2.3	22	100	0	100	28	16	20	36	1.93
90711847--90712018	79	2.2	79	84	3	220	25	21	27	25	1.99
90711794--90712016	40	5.6	39	81	8	209	25	21	27	25	1.99
90711874--90712051	79	2.2	80	80	3	191	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90714614--90714781	40	4.2	40	90	1	250	29	26	22	22	1.99
90722593--90722723	40	3.3	40	87	4	176	29	26	22	21	1.99
90722608--90722727	40	3.0	40	90	2	181	30	28	21	20	1.98
90728514--90728560	22	2.1	22	100	0	94	36	12	10	40	1.78
90761779--90761803	12	2.1	12	100	0	50	16	8	16	60	1.58
90764415--90764552	49	2.8	51	80	10	160	31	27	15	25	1.95
90764427--90764562	50	2.7	51	79	3	161	32	28	14	24	1.95
90768901--90768938	19	2.0	19	85	10	51	21	44	23	10	1.83
90774759--90774832	36	2.1	36	100	0	148	24	10	25	39	1.88
90778619--90778843	40	5.6	40	84	3	290	26	28	22	23	1.99
90778619--90778843	83	2.8	80	84	4	283	26	28	22	23	1.99
90786991--90787252	40	6.6	40	89	2	368	26	25	22	25	2.00
90801882--90802145	121	2.2	121	100	0	528	37	17	13	31	1.88
90803015--90803110	50	1.9	49	93	2	165	31	32	11	25	1.91
90818871--90818960	26	3.5	26	81	0	108	25	23	24	26	2.00
90820558--90820640	42	2.0	42	83	4	105	18	14	32	34	1.91
90836883--90836929	18	2.6	18	74	12	51	44	19	17	19	1.87
90837187--90837242	23	2.4	22	85	14	69	39	21	16	23	1.92
90837305--90837393	27	3.3	27	92	3	144	19	17	20	42	1.89
90837305--90837404	27	3.7	27	86	2	85	22	17	21	40	1.92
90837385--90837485	27	3.7	27	93	0	157	35	14	17	31	1.91
90845168--90845279	44	2.6	42	80	6	109	25	17	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90850373--90850436	33	1.9	33	90	0	101	23	26	23	26	2.00
90856563--90856587	10	2.5	10	100	0	50	28	8	20	44	1.79
90865267--90865381	60	2.0	54	85	9	149	20	15	17	41	1.85
90871502--90871923	27	15.7	27	71	8	191	37	21	9	31	1.85
90871631--90871949	54	5.9	54	75	5	216	39	20	10	29	1.86
90871636--90871924	81	3.6	81	84	4	361	39	20	9	30	1.85
90871636--90871895	81	3.2	81	86	4	364	40	20	9	29	1.83
90874417--90874718	40	7.6	40	95	1	518	23	23	25	27	2.00
90876451--90876570	40	2.9	42	82	7	165	33	28	15	23	1.94
90879792--90879969	27	6.6	27	84	3	205	29	28	15	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290