genome.fa.s7.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  141  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47933165--47933240	26	2.9	26	86	0	98	31	19	22	26	1.98
47936385--47936419	17	2.1	17	94	5	63	60	14	0	25	1.35
47936847--47936965	29	4.1	29	75	4	87	28	15	19	36	1.92
47936915--47937117	29	7.0	29	73	6	142	27	16	20	35	1.94
47936915--47937117	58	3.5	58	79	0	208	27	16	20	35	1.94
47936919--47937117	87	2.3	88	81	2	213	28	15	20	35	1.93
47938239--47938336	51	1.9	51	87	0	142	27	25	8	38	1.84
47945917--47945942	11	2.4	11	100	0	52	88	0	11	0	0.52
47953925--47954003	37	2.1	37	90	0	122	25	31	18	24	1.98
47954122--47954469	47	7.4	47	96	0	624	29	30	8	31	1.87
47983209--47983254	14	3.2	14	81	6	65	71	6	0	21	1.08
47983209--47983251	15	2.9	15	89	3	61	76	6	0	16	0.99
47983293--47983348	16	3.4	16	90	5	85	66	5	8	19	1.39
47983293--47983348	18	3.2	18	85	5	71	66	5	8	19	1.39
47991445--47991499	3	18.0	3	81	3	56	32	9	0	58	1.30
47993942--47993980	15	2.6	15	87	0	51	17	17	12	51	1.76
47995104--47995154	18	2.7	19	73	14	61	37	17	9	35	1.83
48001035--48001078	21	2.1	21	91	0	70	13	13	29	43	1.83
48002484--48002517	17	2.1	16	88	5	50	76	14	0	8	1.01
48010927--48010968	21	2.0	21	81	9	50	28	14	4	52	1.62
48023513--48023545	15	2.1	16	94	5	59	18	12	6	63	1.48
48025754--48025923	40	4.3	40	85	1	207	23	21	30	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48025776--48025958	79	2.3	80	80	1	208	25	21	29	24	1.99
48030835--48030980	74	2.0	74	94	0	256	30	16	26	27	1.97
48031349--48031551	101	2.0	101	97	0	379	26	23	20	29	1.99
48033842--48034051	40	5.3	39	89	4	242	25	21	27	25	1.99
48033789--48034051	120	2.2	120	82	4	309	25	21	27	25	1.99
48033790--48034059	80	3.4	80	82	5	217	25	21	27	25	1.99
48034949--48035025	37	2.1	36	81	11	86	38	2	3	54	1.33
48046840--48047017	27	6.6	27	85	3	223	30	28	15	25	1.96
48046861--48047016	82	1.9	81	88	3	233	30	28	15	26	1.96
48054997--48055174	27	6.6	27	84	3	205	29	28	15	26	1.96
48055018--48055173	82	1.9	81	88	3	233	29	28	15	26	1.96
48057190--48057419	27	8.5	27	87	0	271	19	16	20	42	1.89
48057192--48057419	82	2.8	81	85	2	314	19	16	21	42	1.89
48068094--48068418	163	2.0	163	98	0	632	29	15	13	41	1.86
48071869--48071916	25	1.9	25	83	8	62	25	25	18	31	1.98
48071878--48071942	25	2.7	25	81	9	73	26	21	20	32	1.97
48077174--48077351	27	6.6	27	83	3	205	26	15	28	29	1.96
48077175--48077330	82	1.9	81	88	3	233	26	15	28	29	1.96
48077171--48077351	82	2.2	81	83	2	229	27	15	27	29	1.96
48079006--48079071	32	2.1	32	97	0	123	27	12	3	57	1.49
48080233--48080531	87	3.4	87	99	0	582	45	19	13	22	1.84
48082503--48082588	43	2.0	42	91	4	138	32	10	34	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48083847--48084116	40	6.8	40	89	2	366	25	22	27	24	2.00
48084430--48084459	15	2.0	15	100	0	60	40	20	6	33	1.78
48087016--48087062	13	3.4	13	81	16	58	23	2	2	72	1.06
48092825--48093098	48	5.7	48	82	2	282	23	31	17	28	1.97
48092823--48093101	96	2.9	96	80	3	337	23	30	17	28	1.97
48103135--48103236	51	2.0	51	98	0	195	40	14	25	19	1.90
48124113--48124222	45	2.4	46	83	6	143	30	22	16	30	1.96
48130798--48130919	43	2.9	43	92	1	201	20	30	22	27	1.98
48137735--48137767	16	1.9	18	88	11	52	51	18	12	18	1.76
48138330--48138451	43	2.9	43	87	1	192	20	27	22	28	1.99
48139944--48140114	85	2.0	85	94	0	297	26	25	22	25	2.00
48143131--48143267	70	2.0	70	95	0	247	42	8	4	45	1.53
48144391--48144425	19	1.9	17	88	11	52	60	2	0	37	1.12
48152020--48152269	46	5.5	43	81	8	232	26	30	18	25	1.98
48152057--48152269	44	4.7	44	82	8	234	25	31	17	24	1.97
48152056--48152273	90	2.4	90	82	8	273	25	31	18	25	1.98
48158563--48158615	22	2.5	22	78	3	63	32	15	28	24	1.95
48164301--48164364	19	3.1	21	86	6	60	37	18	9	34	1.83
48164318--48164396	19	4.2	19	87	9	117	36	15	10	37	1.81
48164653--48165268	309	2.0	309	95	0	1106	26	23	17	33	1.96
48165090--48165625	206	2.6	206	94	0	932	28	22	18	30	1.97
48165572--48165665	44	2.1	44	82	4	107	27	25	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48165587--48166545	88	10.9	88	98	0	1825	25	23	20	30	1.98
48165587--48166744	176	6.5	176	95	3	1998	25	23	20	30	1.98
48165587--48166744	264	4.3	264	96	3	2016	25	23	20	30	1.98
48166361--48166757	199	2.0	199	99	0	785	24	23	20	30	1.98
48166449--48166656	111	1.9	111	100	0	416	25	23	21	30	1.99
48166560--48166693	44	3.0	44	74	8	164	23	23	23	29	1.99
48166560--48166744	88	2.1	88	100	0	370	24	23	21	29	1.99
48166576--48166763	44	4.2	45	77	6	204	24	24	19	31	1.98
48167607--48167664	16	3.5	15	81	9	53	5	15	0	79	0.90
48167605--48167674	9	8.4	8	76	20	56	4	15	0	80	0.87
48167606--48167665	24	2.4	24	78	13	68	5	15	0	80	0.88
48167609--48167672	25	2.5	24	80	12	74	4	15	0	79	0.89
48170090--48170128	2	20.0	2	84	5	53	0	43	0	56	0.99
48170168--48170220	14	3.7	14	77	20	56	43	13	20	22	1.86
48173208--48173989	19	41.2	19	99	0	1532	36	15	10	36	1.82
48175620--48176472	71	12.0	71	100	0	1706	38	22	14	25	1.91
48177486--48177537	22	2.4	22	87	3	70	32	15	28	23	1.95
48180133--48180169	19	2.0	18	89	5	56	67	0	2	29	1.04
48184305--48184515	23	9.2	23	84	5	266	24	20	25	29	1.99
48187773--48187823	22	2.4	22	80	3	59	33	15	29	21	1.94
48191551--48191575	4	6.2	4	100	0	50	76	0	0	24	0.80
48191900--48191957	3	19.0	3	76	16	57	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48191904--48191970	12	5.4	12	76	11	64	58	0	0	41	0.98
48191900--48192040	37	3.9	35	70	22	103	61	0	2	34	1.16
48191948--48192031	25	3.4	25	76	15	84	61	1	3	33	1.20
48191897--48192040	25	6.3	22	66	21	57	62	0	2	34	1.15
48193657--48194804	83	13.8	83	98	0	2089	27	19	20	32	1.97
48194728--48195083	119	3.0	119	92	0	577	29	18	17	33	1.94
48195075--48195254	44	4.1	44	73	13	172	29	24	16	30	1.96
48196125--48196191	22	3.0	22	78	10	73	2	19	0	77	0.89
48196132--48196192	10	5.7	10	73	19	52	1	14	0	83	0.72
48196133--48196191	23	2.6	22	84	10	75	1	15	0	83	0.74
48196136--48196195	14	4.8	13	78	17	65	1	15	0	83	0.73
48196132--48196195	22	3.0	21	84	4	76	1	14	0	84	0.70
48200748--48201108	26	13.9	26	91	0	569	31	6	25	36	1.82
48202507--48202646	27	5.2	27	88	2	183	17	24	22	35	1.96
48202507--48202646	54	2.6	55	89	2	203	17	24	22	35	1.96
48210577--48210716	12	11.4	12	71	14	72	35	3	1	59	1.24
48210579--48210687	24	4.4	25	76	12	118	36	4	0	58	1.19
48210577--48210687	10	10.6	10	73	24	88	36	4	0	58	1.18
48210588--48210689	42	2.5	39	76	20	109	36	4	0	58	1.19
48215299--48215380	26	3.2	26	92	0	137	35	25	7	31	1.84
48220936--48221002	20	3.2	20	67	12	55	65	4	2	26	1.26
48220926--48221008	42	2.0	42	93	4	143	60	6	3	30	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48220905--48220992	20	4.1	22	71	16	69	64	4	2	28	1.25
48224180--48224205	11	2.4	11	100	0	52	53	7	0	38	1.30
48227835--48227867	17	1.9	17	88	11	50	69	0	0	30	0.88
48227835--48227868	18	1.9	17	88	5	50	70	0	0	29	0.87
48228124--48228199	22	3.7	21	76	15	68	40	17	6	35	1.75
48228160--48228250	19	4.9	19	88	8	143	36	16	9	37	1.82
48228153--48228250	35	2.7	37	84	12	132	35	17	9	37	1.82
48228607--48228873	45	5.9	45	79	6	290	24	26	16	32	1.96
48228614--48228783	89	1.9	89	95	0	304	25	28	15	30	1.96
48228813--48229185	78	4.8	78	89	1	532	24	23	19	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290