genome.fa.s7.2.7.7.80.10.50.1000.281.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  281  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97005244--97005468	80	2.8	79	82	6	231	27	28	20	24	1.99
97005246--97005468	120	1.9	119	82	4	279	26	28	20	24	1.99
97013131--97013308	27	6.6	27	84	3	205	29	28	15	26	1.96
97013152--97013307	82	1.9	81	88	3	233	29	28	15	26	1.96
97018785--97018968	50	3.7	50	83	2	230	29	17	28	23	1.97
97018790--97018968	99	1.8	99	85	2	254	29	18	29	23	1.98
97025697--97025810	43	2.7	43	87	5	151	32	28	14	25	1.94
97029824--97029940	42	2.8	42	79	5	130	30	16	23	29	1.96
97036823--97037133	30	10.4	30	76	6	231	40	11	21	26	1.87
97036905--97036983	29	2.7	30	90	4	133	43	11	21	24	1.85
97036937--97037147	90	2.3	89	85	2	287	39	12	22	25	1.90
97038560--97038731	46	3.7	46	75	10	170	24	29	18	27	1.98
97038560--97038730	94	1.8	92	83	5	227	24	29	18	28	1.98
97051501--97051582	26	3.2	26	94	3	139	34	6	23	36	1.79
97057573--97057648	26	2.8	28	80	6	84	35	21	11	31	1.89
97057749--97057863	27	4.3	26	83	9	133	15	23	25	35	1.94
97057749--97057863	54	2.1	54	85	6	153	15	23	25	35	1.94
97059020--97059109	46	1.9	48	82	8	114	38	15	22	23	1.92
97059130--97059271	54	2.7	52	84	4	196	24	15	26	33	1.95
97062946--97062995	21	2.4	21	83	6	66	40	2	16	42	1.59
97067413--97067455	22	2.0	22	90	9	70	27	4	2	65	1.25
97067685--97067722	17	2.2	16	90	9	58	18	23	2	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97067676--97067722	12	4.2	11	84	15	53	19	25	2	53	1.56
97067717--97067763	22	2.3	19	82	13	58	27	8	0	63	1.23
97067739--97067830	21	4.0	24	70	21	63	27	14	0	58	1.36
97067709--97068098	48	8.2	47	77	10	371	26	13	1	59	1.41
97067734--97067971	75	3.2	71	72	18	198	26	14	0	57	1.42
97067838--97067917	27	3.0	27	90	3	126	27	11	0	61	1.30
97067785--97067971	102	1.8	102	86	6	272	26	13	1	58	1.43
97067716--97068098	150	2.7	138	79	14	416	26	13	1	59	1.41
97067798--97068027	75	3.1	74	70	13	193	26	13	1	59	1.43
97068008--97068045	18	2.1	19	90	5	60	23	5	0	71	1.07
97067948--97068116	91	1.8	91	86	3	214	26	12	1	60	1.39
97070584--97070664	42	1.9	42	82	5	101	18	32	28	20	1.97
97074860--97074981	61	2.0	61	98	0	235	35	24	17	22	1.95
97088547--97088589	20	2.2	19	84	12	52	46	2	2	48	1.27
97090148--97090331	79	2.3	81	82	11	222	25	27	22	25	2.00
97090148--97090331	40	4.6	41	83	12	199	25	27	22	25	2.00
97092556--97092668	57	2.0	57	94	3	201	23	24	23	27	2.00
97097724--97097867	40	3.6	40	78	10	152	25	27	21	25	1.99
97104007--97104120	27	4.2	27	84	5	142	35	21	23	19	1.95
97104007--97104121	55	2.1	55	85	9	157	36	20	23	19	1.95
97109256--97109334	29	2.7	29	86	5	106	27	32	15	24	1.95
97111313--97111368	26	2.2	26	93	0	94	48	14	25	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97115580--97115993	47	8.7	47	74	10	249	27	17	29	25	1.98
97119695--97119815	42	2.9	42	82	4	163	28	24	16	29	1.97
97121774--97121865	44	2.1	44	93	0	157	32	10	10	45	1.74
97122477--97122577	30	3.3	31	69	6	89	39	2	4	52	1.38
97124854--97124910	28	2.0	29	83	10	73	47	10	12	29	1.74
97127889--97127931	22	2.0	22	90	0	68	44	0	25	30	1.55
97130200--97130297	27	3.6	27	86	2	117	41	21	8	28	1.81
97130318--97130773	27	16.9	27	86	1	585	33	20	21	24	1.97
97131200--97131264	22	3.0	22	80	8	78	20	23	23	33	1.97
97131917--97131984	34	2.0	34	97	0	127	42	11	26	19	1.85
97132347--97132460	27	4.2	27	86	0	156	41	18	9	30	1.83
97132456--97133271	27	30.3	27	88	0	1024	33	20	21	24	1.97
97133698--97133762	22	3.0	22	82	8	87	20	21	23	35	1.96
97133921--97134022	27	3.8	27	87	5	134	18	23	21	36	1.95
97134159--97134224	31	2.1	32	97	2	125	19	15	15	50	1.79
97139510--97139706	100	2.0	100	94	0	349	24	17	24	32	1.97
97142747--97143218	40	11.8	40	96	0	847	25	20	29	25	1.99
97147781--97147926	71	2.1	71	98	0	283	35	8	17	39	1.79
97153556--97153942	40	9.7	40	96	1	688	23	20	25	31	1.98
97153559--97153986	40	10.7	40	95	0	323	23	20	26	29	1.99
97159119--97159295	27	6.5	27	83	3	203	27	15	27	29	1.96
97159120--97159275	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97159116--97159295	82	2.2	81	83	3	227	27	15	27	30	1.96
97161696--97161741	20	2.3	20	82	14	60	28	28	17	26	1.98
97161708--97161750	19	2.2	20	83	4	52	34	25	18	20	1.96
97170737--97170843	53	2.0	53	92	0	178	22	33	15	28	1.95
97171665--97171708	19	2.4	18	85	7	54	40	9	0	50	1.34
97174853--97174895	19	2.3	19	87	0	59	39	9	0	51	1.34
97181156--97181270	43	2.7	41	76	12	99	26	20	26	26	1.99
97183581--97183845	40	6.7	40	84	4	313	24	21	27	26	1.99
97183581--97183845	80	3.3	79	87	3	345	24	21	27	26	1.99
97191844--97192068	40	5.7	40	83	3	233	24	21	27	27	1.99
97191844--97192093	80	3.2	79	81	4	272	24	21	26	26	1.99
97200165--97200267	43	2.4	42	76	13	104	29	19	23	28	1.98
97204403--97204747	40	8.6	40	91	1	539	24	28	20	27	1.99
97218845--97218938	27	3.5	27	78	8	84	32	14	14	37	1.88
97218893--97218996	54	1.9	54	84	7	140	34	11	16	37	1.85
97218861--97219000	27	5.2	28	77	10	125	33	11	19	35	1.87
97227398--97227525	46	2.8	46	91	0	193	19	20	29	30	1.97
97234612--97234644	16	2.1	16	100	0	66	51	24	12	12	1.73
97253100--97253150	22	2.5	20	83	6	57	29	0	11	58	1.33
97255132--97255301	93	1.8	92	88	1	259	22	18	28	30	1.97
97263969--97264035	33	2.0	33	85	0	89	23	23	23	28	2.00
97270371--97270454	28	3.0	28	91	1	132	19	3	30	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97270375--97270468	28	3.6	24	78	18	91	15	4	34	45	1.66
97270659--97270744	21	4.0	23	77	11	92	15	19	25	39	1.91
97278548--97278656	43	2.7	41	80	12	127	31	26	19	22	1.98
97283896--97283929	16	2.2	15	89	5	50	14	8	0	76	1.01
97288253--97288307	21	2.5	22	80	11	60	14	1	5	78	1.02
97288252--97288302	20	2.5	20	81	12	59	13	1	7	76	1.09
97288257--97288322	32	2.1	31	83	8	80	12	3	7	77	1.09
97295229--97295285	28	2.0	28	90	6	89	19	28	36	15	1.92
97300466--97300669	40	5.2	40	89	4	290	25	27	22	25	2.00
97304268--97304526	68	3.9	64	75	16	226	30	16	28	24	1.96
97314390--97314452	30	2.1	31	93	3	110	44	6	7	41	1.59
97324185--97324228	20	2.2	20	84	4	54	43	2	2	52	1.26
97325382--97325466	38	2.2	38	91	0	134	40	20	16	23	1.91
97333397--97333556	38	4.2	38	84	3	196	33	25	20	20	1.97
97338524--97338639	47	2.4	48	91	2	189	25	18	19	36	1.95
97352649--97353405	40	19.0	40	90	0	1097	25	21	28	25	1.99
97355963--97356203	47	5.1	47	86	4	304	32	10	29	27	1.90
97356189--97356312	46	2.7	46	89	0	185	34	9	30	25	1.88
97356485--97357013	37	14.3	37	98	0	968	23	18	32	25	1.97
97358839--97358908	27	2.6	27	95	2	113	31	28	12	27	1.93
97358839--97358936	28	3.5	28	90	2	135	31	28	13	26	1.94
97361662--97361782	58	2.1	59	88	1	181	24	15	24	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97361820--97361866	24	2.0	24	86	0	67	17	25	36	21	1.94
97362273--97362393	58	2.1	59	88	1	181	24	15	24	34	1.95
97362431--97362477	24	2.0	24	86	0	67	17	25	36	21	1.94
97361383--97362654	611	2.1	612	98	0	2460	23	24	29	22	1.99
97362983--97363150	82	2.0	82	93	0	282	38	17	25	19	1.92
97370262--97370386	43	3.0	42	74	14	121	18	36	25	20	1.95
97370314--97372808	43	58.6	41	80	12	653	17	32	35	14	1.91
97370307--97372760	85	28.8	85	87	4	2312	17	32	35	14	1.90
97370307--97372760	255	9.6	256	90	2	3169	17	32	35	14	1.90
97373018--97373088	24	2.9	25	79	6	83	23	35	32	8	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290