genome.fa.s7.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  138  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46837966--46838175	67	3.2	67	85	4	232	29	18	30	22	1.97
46837999--46838175	67	2.7	67	90	0	266	30	19	29	20	1.97
46841584--46841768	93	2.0	93	96	0	343	25	15	22	36	1.94
46842243--46842289	24	2.0	24	100	0	94	29	12	12	44	1.80
46856969--46857094	43	3.0	42	73	5	119	26	17	24	30	1.97
46856935--46857094	85	1.9	85	82	2	205	25	18	26	29	1.98
46875546--46875608	29	2.2	29	94	0	108	44	7	19	28	1.78
46879485--46879606	61	2.0	61	98	0	235	29	20	19	30	1.97
46891858--46892074	46	4.7	45	78	10	181	23	30	19	26	1.98
46891866--46892077	94	2.3	90	82	11	236	23	30	19	26	1.98
46900595--46900675	41	2.0	42	85	4	112	19	18	40	20	1.91
46901316--46901352	2	18.5	2	94	0	65	51	45	2	0	1.15
46902295--46902343	20	2.4	19	80	12	53	44	18	8	28	1.78
46902490--46902613	24	5.2	24	74	13	112	41	17	17	23	1.90
46909370--46909459	29	3.0	30	78	15	114	30	15	21	33	1.94
46923158--46923185	3	9.3	3	100	0	56	67	0	0	32	0.91
46930577--46930620	20	2.1	21	80	15	56	2	15	2	79	0.93
46930805--46930835	3	10.3	3	92	0	53	64	0	0	35	0.94
46933421--46933470	25	2.0	25	96	0	91	28	8	26	38	1.84
46941274--46941317	6	7.7	6	80	10	56	84	0	0	15	0.63
46941272--46941316	22	2.0	23	91	4	74	82	0	0	17	0.68
46941273--46941317	11	4.0	11	85	2	63	84	0	0	15	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46942902--46942991	6	14.7	6	70	17	60	48	13	18	18	1.80
46942911--46943021	31	3.5	31	90	1	150	49	11	18	20	1.78
46943158--46943259	27	3.8	26	88	5	132	36	21	23	18	1.95
46943706--46943825	27	4.4	27	84	6	154	33	9	18	39	1.82
46949727--46949907	47	3.9	47	75	8	147	24	27	18	29	1.98
46949776--46949947	47	3.7	44	72	12	114	23	25	19	30	1.98
46949775--46949944	93	1.8	94	83	8	231	23	25	19	31	1.98
46961200--46961462	47	5.6	48	79	6	231	22	29	19	28	1.98
46961200--46961463	94	2.8	93	76	13	258	23	29	19	28	1.98
46961200--46961462	140	1.9	141	81	5	327	22	29	19	28	1.98
46963113--46963288	49	3.6	49	81	6	198	22	25	21	30	1.99
46963111--46963295	98	1.9	97	87	3	273	22	25	21	30	1.99
46965169--46965400	56	4.1	56	97	0	437	45	9	22	22	1.81
46969409--46969495	24	3.6	24	86	7	106	25	31	16	27	1.96
46975504--46975560	28	2.0	28	100	0	114	36	17	14	31	1.89
46975703--46975742	21	2.0	20	90	5	62	22	30	37	10	1.87
46976983--46977203	50	4.6	50	70	14	171	24	28	19	26	1.99
46980287--46980345	3	19.7	3	100	0	118	0	0	32	67	0.91
46982132--46982165	18	1.9	18	88	5	52	52	0	20	26	1.46
46982250--46982335	21	4.0	21	82	5	100	15	23	24	37	1.93
46982625--46982661	13	2.8	13	91	0	65	64	8	13	13	1.48
46982697--46982729	13	2.5	13	100	0	66	45	0	15	39	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46990400--46990545	43	3.4	42	75	14	129	26	15	24	33	1.95
46990430--46990564	43	3.1	42	76	8	130	26	15	24	33	1.95
46997214--46997274	6	10.5	6	84	5	65	19	0	3	77	0.91
47001637--47001676	18	2.3	18	91	4	64	10	30	50	10	1.69
47004279--47004334	26	2.3	24	77	14	60	41	21	17	19	1.91
47004891--47004946	26	2.1	27	93	3	96	26	12	25	35	1.91
47004903--47005084	54	3.4	54	80	8	153	29	10	21	37	1.88
47004929--47005084	27	5.8	27	81	8	167	28	10	21	39	1.87
47006599--47006638	21	1.9	21	100	0	80	35	27	12	25	1.92
47012821--47012851	15	2.1	15	93	0	53	19	0	25	54	1.44
47014101--47014156	25	2.2	25	90	0	85	32	21	16	30	1.95
47015834--47015989	21	7.5	21	72	9	79	42	17	21	19	1.89
47015895--47016049	21	7.4	21	74	2	114	46	15	18	19	1.84
47015895--47016048	63	2.4	63	81	2	157	46	15	18	19	1.85
47022095--47022146	21	2.5	20	77	22	63	38	13	1	46	1.54
47030586--47030644	10	5.9	10	84	7	84	20	10	1	67	1.28
47033203--47033235	15	2.2	15	94	0	57	21	12	9	57	1.62
47033671--47033700	15	2.0	15	93	0	51	20	30	20	30	1.97
47034292--47034349	16	3.7	16	71	17	50	56	25	6	10	1.57
47036981--47037021	21	2.0	21	90	0	64	48	2	0	48	1.14
47042116--47042146	15	2.1	15	100	0	62	0	6	19	74	1.03
47042277--47042343	25	2.8	24	74	17	66	64	0	32	2	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47042978--47043028	22	2.4	21	75	15	50	45	1	0	52	1.12
47049299--47049325	14	1.9	14	100	0	54	7	40	29	22	1.81
47050564--47050950	191	2.0	191	97	0	729	28	19	11	40	1.86
47075255--47075304	16	3.4	16	68	21	54	18	12	0	70	1.17
47075263--47075310	13	3.2	16	66	22	50	14	16	0	68	1.21
47075250--47075316	28	2.4	28	95	2	118	14	13	0	71	1.14
47087045--47087103	26	2.4	24	81	10	66	84	0	6	8	0.77
47087067--47087107	14	3.0	14	86	13	59	87	0	0	12	0.53
47087069--47087107	19	2.0	19	95	5	69	87	0	0	12	0.55
47087941--47088268	119	2.8	119	96	0	593	32	17	19	29	1.95
47088191--47088388	83	2.4	82	85	5	256	30	19	20	29	1.97
47088216--47088418	83	2.4	83	84	8	236	32	18	21	27	1.97
47091113--47091196	42	2.0	42	97	0	159	52	20	7	20	1.69
47092460--47092490	14	2.1	15	94	5	55	67	0	0	32	0.91
47093700--47093724	3	8.3	3	100	0	50	0	32	0	68	0.90
47094808--47094859	24	2.2	24	89	0	77	36	3	9	50	1.54
47101577--47101713	40	3.5	40	81	6	163	26	27	22	24	2.00
47110852--47110879	10	2.8	10	100	0	56	53	17	0	28	1.44
47111565--47111606	20	2.2	20	87	12	61	28	21	0	50	1.49
47121734--47121788	15	3.7	15	87	2	76	50	10	0	38	1.37
47122953--47122979	9	3.0	9	100	0	54	22	0	0	77	0.76
47127148--47127301	43	3.6	43	74	11	127	24	15	24	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47127198--47127301	42	2.4	42	82	6	120	25	15	25	34	1.95
47135835--47135896	31	2.0	31	100	0	124	35	9	12	41	1.76
47136863--47136990	44	3.0	42	82	7	132	27	17	22	32	1.96
47137340--47137511	43	4.0	43	76	10	145	24	17	24	33	1.96
47136841--47137788	496	1.9	491	91	2	1542	29	12	23	34	1.91
47138242--47138282	21	1.9	22	85	5	57	17	4	24	53	1.63
47140749--47140800	24	2.2	24	89	0	77	36	3	9	50	1.54
47141148--47141176	14	2.1	14	100	0	58	41	6	6	44	1.58
47141275--47141334	17	3.5	17	77	11	68	31	0	3	65	1.09
47141276--47141334	9	6.9	8	76	14	55	30	0	3	66	1.08
47145726--47145875	67	2.2	67	81	8	171	32	17	28	21	1.96
47145750--47145933	67	2.8	64	77	8	194	29	17	29	22	1.97
47149109--47149151	16	2.8	15	74	19	52	48	4	0	46	1.22
47159881--47159962	43	1.9	43	89	0	128	24	18	28	29	1.98
47167848--47167929	43	1.9	43	87	0	119	25	21	26	25	2.00
47170995--47171119	40	3.2	40	85	4	173	23	22	28	25	1.99
47184961--47185099	58	2.4	58	84	7	185	42	1	2	53	1.21
47188097--47188148	15	3.2	15	73	19	50	44	0	1	53	1.11
47188181--47188217	16	2.3	16	86	13	58	40	0	0	59	0.97
47188229--47188284	22	2.6	22	83	5	62	51	0	0	48	1.00
47190215--47190279	20	3.4	19	74	8	60	43	1	10	44	1.48
47190720--47190787	23	2.9	23	72	12	59	5	13	4	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47193071--47193122	15	3.5	15	70	15	54	51	9	9	28	1.66
47193705--47193742	20	1.9	20	88	0	58	36	2	10	50	1.51
47195029--47195094	29	2.3	29	86	0	87	63	3	3	30	1.24
47196446--47196474	5	5.8	5	100	0	58	37	20	20	20	1.94
47196776--47196834	31	1.9	31	85	0	82	35	11	11	40	1.79
47197121--47197157	19	1.9	19	88	0	56	51	2	13	32	1.55
47197924--47198012	45	2.0	43	86	4	124	40	3	2	53	1.30
47199582--47200041	109	4.3	108	87	4	651	38	16	13	32	1.86
47206370--47206399	14	2.1	14	100	0	60	20	6	16	56	1.62
47207396--47207429	16	2.1	16	88	0	50	50	14	17	17	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290