genome.fa.s7.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  152  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51739308--51739421	37	3.0	37	92	5	183	35	10	16	36	1.83
51743374--51743407	17	2.0	17	88	0	50	64	0	35	0	0.94
51745905--51745962	7	8.4	7	80	16	68	84	0	15	0	0.62
51745905--51745954	19	2.5	21	90	9	79	84	0	16	0	0.63
51746888--51747075	44	4.3	44	86	2	245	32	16	22	27	1.96
51746913--51747102	88	2.2	88	82	3	222	36	16	22	24	1.94
51747064--51747228	78	2.1	78	86	2	224	34	18	21	24	1.96
51747311--51747534	40	5.2	40	63	23	107	26	15	24	33	1.95
51747267--51747546	87	3.2	87	92	0	472	26	16	24	32	1.96
51747672--51747864	78	2.5	78	86	0	260	33	17	22	26	1.96
51747692--51748063	199	1.9	199	89	1	584	33	17	22	26	1.96
51747891--51748168	78	3.6	78	89	1	405	32	18	23	25	1.97
51749533--51749738	87	2.4	87	89	0	304	28	15	25	31	1.95
51749766--51750059	78	3.8	78	92	1	464	32	19	23	24	1.97
51750090--51750210	45	2.7	43	84	6	143	31	13	28	27	1.94
51750088--51750214	44	2.8	45	84	4	159	31	13	27	27	1.94
51750588--51750720	19	6.9	19	87	8	189	36	10	17	36	1.84
51750588--51750727	37	3.7	38	85	8	189	36	10	17	35	1.84
51750588--51750728	56	2.5	57	86	6	207	36	9	17	35	1.83
51751236--51751285	26	2.0	25	88	4	73	20	6	8	66	1.40
51752526--51752554	12	2.4	12	100	0	58	62	13	0	24	1.32
51755672--51755707	17	2.1	17	89	0	54	8	22	0	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51759186--51759352	47	3.6	44	76	16	133	23	29	19	27	1.98
51759282--51759378	46	2.1	45	81	11	108	21	29	20	27	1.98
51763315--51763538	40	5.6	40	86	6	310	25	26	23	24	2.00
51763315--51763538	83	2.8	80	88	4	317	25	26	23	24	2.00
51770253--51770518	47	5.7	46	76	10	211	23	30	19	26	1.98
51770252--51770521	94	2.9	92	80	9	237	23	30	19	26	1.98
51770253--51770518	140	1.9	141	85	5	369	23	30	19	26	1.98
51773219--51773476	40	6.5	40	93	2	396	22	23	28	25	1.99
51781173--51781430	40	6.5	40	93	2	396	22	23	28	25	1.99
51794627--51794672	23	2.0	23	83	8	58	34	6	15	43	1.72
51798864--51798966	42	2.4	42	81	1	125	22	16	30	31	1.96
51798859--51798966	43	2.5	43	80	1	128	22	17	29	30	1.97
51800450--51800477	13	2.2	13	100	0	56	32	0	35	32	1.58
51801965--51802019	26	2.2	26	83	3	67	27	21	18	32	1.96
51802516--51802546	16	1.9	16	93	0	53	9	19	19	51	1.74
51804952--51805127	46	3.8	45	81	10	212	21	21	29	28	1.98
51804948--51805119	93	1.8	93	94	0	308	20	21	30	27	1.98
51815221--51815357	60	2.3	59	81	11	145	27	24	18	29	1.98
51815414--51815966	276	2.0	276	99	0	1097	32	30	13	23	1.94
51818066--51818109	19	2.4	18	85	7	54	40	9	0	50	1.34
51822624--51822674	25	2.0	26	88	3	77	13	3	31	50	1.60
51829784--51829827	23	2.0	22	86	4	61	27	0	18	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51839903--51839949	17	2.8	16	75	18	51	51	0	12	36	1.40
51842798--51842859	18	3.3	18	73	8	52	25	4	4	64	1.34
51849385--51849534	67	2.2	67	81	8	171	32	17	28	21	1.96
51849409--51849592	67	2.8	64	77	8	194	29	17	29	22	1.97
51858215--51858477	40	6.6	40	87	3	300	26	28	20	24	1.99
51866133--51866310	27	6.6	27	84	3	205	29	28	15	26	1.96
51866154--51866309	82	1.9	81	88	3	233	29	28	15	26	1.96
51869796--51870392	119	5.0	119	94	0	1014	33	16	19	31	1.93
51877900--51877925	5	5.2	5	100	0	52	23	38	0	38	1.55
51880859--51880899	19	2.0	20	86	9	57	48	0	24	26	1.51
51885911--51885957	23	2.0	23	91	0	76	31	21	8	38	1.83
51891601--51891862	47	5.6	46	72	12	135	23	29	18	29	1.98
51901126--51901156	14	2.3	13	94	5	53	51	0	3	45	1.17
51902187--51902219	16	1.9	18	88	11	52	42	0	9	48	1.35
51905053--51905178	29	4.3	29	75	2	117	25	12	20	41	1.88
51905182--51905245	29	2.2	29	86	5	85	29	12	23	34	1.92
51913007--51913104	23	4.3	22	75	8	81	33	21	19	25	1.97
51913000--51913104	46	2.3	45	81	3	131	36	20	18	24	1.95
51913018--51913111	23	4.1	23	75	6	84	35	21	21	22	1.96
51930814--51930848	18	1.9	18	88	0	52	34	17	20	28	1.95
51932176--51932217	22	2.0	22	85	4	59	21	23	40	14	1.90
51932651--51932761	57	1.9	57	98	0	213	26	28	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51936082--51936165	30	2.6	33	76	14	86	46	22	0	30	1.52
51936916--51936958	5	8.6	5	100	0	86	58	0	0	41	0.98
51937051--51937107	26	2.2	26	96	0	105	26	10	8	54	1.63
51938689--51938727	17	2.2	18	86	4	53	10	43	30	15	1.80
51938813--51938857	12	3.8	12	84	0	63	28	48	13	8	1.72
51939507--51939580	37	2.0	37	97	0	139	39	37	12	10	1.78
51949973--51950032	29	2.1	29	96	0	111	30	0	5	65	1.14
51949987--51950036	14	3.5	14	74	15	57	26	0	6	68	1.13
51950240--51950269	13	2.3	13	100	0	60	33	30	13	23	1.93
51950298--51950334	7	5.4	7	84	15	51	21	0	2	75	0.92
51951523--51951559	15	2.4	16	82	13	51	54	2	2	40	1.29
51951702--51951856	48	3.2	48	99	0	301	47	2	18	31	1.62
51953147--51953179	17	2.0	17	88	5	50	54	18	9	18	1.69
51955448--51955591	42	3.4	41	79	6	137	30	15	22	30	1.96
51956877--51956945	35	2.0	35	100	0	138	31	5	17	44	1.72
51958181--51958231	25	2.0	25	92	0	84	23	15	13	47	1.82
51960565--51960619	21	2.5	21	82	11	67	23	3	25	47	1.68
51962600--51962654	26	2.1	26	86	6	76	50	7	10	30	1.64
51965782--51965849	28	2.4	28	92	0	118	19	14	8	57	1.63
51967636--51967728	28	3.3	28	77	5	91	13	20	19	46	1.84
51968330--51968384	26	2.1	26	100	0	110	23	30	10	34	1.89
51975311--51975576	46	5.6	48	76	11	224	30	19	26	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51975362--51975578	97	2.2	96	81	7	235	30	19	26	23	1.98
51998717--51998771	27	2.0	27	82	6	67	61	3	3	30	1.30
52000380--52000418	14	2.9	14	88	3	53	35	2	0	61	1.10
52001335--52001403	16	4.2	16	96	3	129	24	0	37	37	1.56
52001335--52001403	33	2.1	32	97	2	129	24	0	37	37	1.56
52001636--52001670	18	2.0	17	88	5	52	54	0	0	45	0.99
52001651--52001838	61	3.1	61	70	14	199	48	6	1	42	1.39
52001619--52001911	120	2.4	121	94	1	518	49	5	2	42	1.37
52001735--52001786	15	3.6	15	80	12	56	53	1	0	44	1.11
52001852--52002134	91	3.0	93	84	7	317	48	3	3	44	1.35
52001952--52002012	28	2.2	28	85	5	81	50	3	0	45	1.17
52001959--52002102	47	3.1	46	65	23	113	49	4	2	44	1.33
52001927--52002134	91	2.3	90	90	4	326	46	4	3	45	1.39
52001952--52002094	44	3.2	43	68	16	119	48	3	2	46	1.31
52001977--52002115	47	3.0	47	68	17	137	49	4	2	43	1.34
52004936--52004965	15	2.0	15	93	0	51	50	20	23	6	1.71
52017151--52017195	23	2.0	23	86	4	65	46	17	2	33	1.61
52017177--52017229	19	3.0	17	73	10	52	33	20	9	35	1.85
52017148--52017205	22	2.6	22	84	7	73	43	18	1	36	1.61
52020976--52021054	39	2.0	39	95	0	140	29	21	12	36	1.90
52022329--52022373	23	2.0	23	86	4	65	48	15	4	31	1.65
52022326--52022383	22	2.6	22	84	7	73	44	17	3	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52022355--52022407	19	3.0	17	73	10	52	33	20	9	35	1.85
52022339--52022383	23	2.0	23	91	4	74	40	17	4	37	1.70
52023333--52023430	27	3.6	27	77	2	90	37	7	25	29	1.83
52028449--52028498	25	2.0	25	84	7	66	22	2	4	72	1.12
52028469--52028502	18	1.9	17	88	5	50	20	0	2	76	0.92
52029378--52029449	31	2.3	31	80	0	90	34	18	11	36	1.86
52031266--52031296	12	2.6	12	100	0	62	9	16	38	35	1.81
52034608--52034696	36	2.5	36	84	0	124	37	6	38	17	1.77
52035338--52035367	3	9.7	3	92	7	51	33	0	0	66	0.92
52036148--52036201	25	2.3	23	75	9	54	40	0	7	51	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290