genome.fa.s7.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  202  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69521458--69521514	28	2.0	28	100	0	114	42	40	7	10	1.66
69522651--69522740	45	2.0	45	93	0	153	45	11	14	28	1.79
69537311--69537386	9	8.1	9	77	8	71	31	0	19	48	1.49
69540608--69540871	84	3.2	84	80	3	275	30	22	15	31	1.95
69541077--69541107	15	2.1	15	93	0	53	41	45	0	12	1.42
69541085--69541191	7	15.1	7	75	7	92	43	38	2	14	1.61
69541097--69541251	21	7.4	21	74	4	116	44	34	1	19	1.62
69541093--69541191	42	2.4	42	86	3	128	44	37	3	15	1.62
69541633--69541696	15	4.4	15	78	5	51	29	0	23	46	1.52
69541633--69541694	22	2.9	22	83	11	67	29	0	22	48	1.51
69542961--69542998	18	2.1	18	100	0	76	73	10	5	10	1.23
69545832--69545893	33	1.9	32	83	9	81	56	8	19	16	1.64
69551738--69551773	18	1.9	19	94	5	65	63	0	0	36	0.94
69552148--69552213	19	3.2	21	87	6	64	36	19	9	34	1.84
69552165--69552243	19	4.2	19	90	9	126	35	16	10	37	1.82
69552187--69552243	17	3.5	15	88	11	53	35	15	10	38	1.82
69552165--69552243	36	2.1	39	90	9	128	35	16	10	37	1.82
69561750--69561927	27	6.6	27	89	0	239	25	15	22	35	1.94
69561750--69561927	81	2.2	81	90	0	275	25	15	22	35	1.94
69562249--69562293	18	2.5	18	92	0	72	17	20	17	44	1.87
69565201--69565245	22	2.0	22	100	0	90	22	22	28	26	1.99
69565547--69565753	27	7.7	27	78	8	224	28	16	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69565547--69565753	54	3.8	53	84	6	274	28	16	17	36	1.92
69565547--69565753	81	2.6	81	81	7	251	28	16	17	36	1.92
69566123--69566164	18	2.3	18	84	8	50	23	19	11	45	1.83
69576486--69576673	51	3.7	50	82	6	209	29	23	12	34	1.92
69576709--69576808	24	4.0	24	80	10	110	24	20	15	41	1.90
69576710--69576812	52	2.0	52	88	0	152	24	21	14	39	1.91
69578014--69578083	32	2.3	30	78	11	79	44	8	12	34	1.73
69578015--69578087	15	4.7	15	77	8	67	45	8	13	32	1.73
69592268--69592308	15	2.7	15	96	0	73	26	0	14	58	1.37
69603732--69603798	26	2.5	27	90	4	109	35	13	22	28	1.92
69605342--69605380	21	1.9	20	89	5	60	33	0	20	46	1.51
69605936--69606030	48	2.0	48	87	0	136	17	17	27	36	1.93
69619908--69619958	21	2.4	21	100	0	102	47	9	19	23	1.79
69627772--69627811	20	2.0	20	100	0	80	45	15	10	30	1.78
69628518--69628601	43	1.9	44	87	2	125	22	20	32	25	1.98
69628882--69629346	38	12.1	38	88	2	624	22	21	25	30	1.99
69628882--69629346	116	4.0	114	88	2	624	22	21	25	30	1.99
69628882--69629346	154	3.0	154	90	1	709	22	21	25	30	1.99
69629343--69629457	45	2.6	45	85	6	146	25	20	26	27	1.99
69630417--69630463	21	2.3	20	85	3	58	29	14	17	38	1.89
69630864--69630954	38	2.4	39	80	12	100	31	4	26	37	1.76
69635565--69635648	44	1.9	44	85	4	116	36	13	25	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69635795--69636099	55	5.6	54	83	5	375	35	18	24	21	1.96
69635803--69636095	108	2.7	108	92	0	478	34	19	23	22	1.96
69638087--69638355	46	5.8	46	76	12	264	21	19	28	29	1.98
69638135--69638301	47	3.6	47	81	11	234	22	18	28	29	1.97
69638084--69638348	93	2.8	93	95	0	458	21	20	29	29	1.98
69643929--69644152	32	7.0	32	90	0	349	44	8	11	34	1.72
69643927--69644152	64	3.5	64	96	0	407	44	8	11	34	1.72
69650088--69650243	84	1.9	84	82	5	199	28	19	14	37	1.91
69651822--69651865	22	2.0	22	90	0	70	29	6	29	34	1.83
69656576--69656651	38	2.0	38	100	0	152	44	15	5	34	1.69
69660645--69660688	23	1.9	23	100	0	88	54	22	0	22	1.45
69662367--69662406	21	2.0	20	85	14	55	67	2	0	30	1.04
69663717--69664394	338	2.0	337	95	0	1205	26	21	18	33	1.96
69671787--69671822	13	2.8	13	91	8	56	44	22	0	33	1.53
69687249--69687384	29	4.7	29	79	5	112	27	27	8	36	1.85
69687304--69687462	29	5.6	29	82	7	182	27	27	8	36	1.86
69692318--69692524	69	3.0	67	77	6	191	39	14	23	22	1.91
69695527--69695577	19	2.7	19	79	11	52	54	7	5	31	1.53
69697701--69697782	42	2.0	42	85	0	110	37	25	10	25	1.89
69697948--69698077	67	1.9	67	84	9	176	31	20	11	36	1.89
69713103--69713169	34	2.0	34	93	0	116	43	23	4	28	1.73
69733001--69733086	42	2.0	42	93	0	145	41	22	6	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69733054--69733120	34	2.0	34	90	0	107	43	22	4	29	1.73
69740294--69741106	5	162.6	5	100	0	1626	39	0	20	39	1.52
69752170--69752263	27	3.5	27	89	0	134	23	26	13	36	1.92
69764252--69764410	87	1.8	86	87	1	237	23	14	23	38	1.92
69765863--69765959	42	2.3	44	85	10	148	51	5	4	39	1.43
69765883--69765969	42	2.1	42	86	4	113	52	5	3	37	1.42
69770645--69770777	69	1.9	69	95	0	239	26	12	32	29	1.92
69770830--69771029	100	2.0	100	94	1	348	35	18	24	22	1.96
69777811--69777923	60	1.9	60	88	3	174	23	14	37	25	1.92
69780862--69781112	126	2.0	127	91	4	411	28	12	16	41	1.85
69786039--69786077	19	2.1	19	95	0	69	30	10	33	25	1.89
69787932--69788057	42	3.0	42	89	2	198	29	26	19	24	1.99
69787940--69788073	43	3.1	43	90	1	198	28	26	20	23	1.99
69792437--69792541	40	2.6	39	92	1	165	24	10	15	49	1.76
69793341--69793404	14	4.4	15	70	7	60	43	37	0	18	1.51
69793434--69793481	15	3.3	15	77	11	55	50	33	0	16	1.46
69793693--69793927	40	5.7	39	74	15	129	28	21	22	26	1.99
69793819--69793966	80	1.9	79	87	7	219	26	20	22	29	1.99
69793815--69793966	40	3.8	39	80	12	168	25	21	22	30	1.98
69795592--69795754	45	3.7	45	82	4	183	20	15	28	35	1.93
69799321--69799485	46	3.6	46	88	0	231	42	13	22	21	1.88
69804173--69804215	24	1.9	23	86	13	63	32	0	11	55	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69806970--69807044	30	2.6	27	76	17	71	68	0	13	18	1.22
69807693--69807737	23	2.0	23	86	8	65	11	20	26	42	1.85
69810660--69810708	19	2.6	17	79	17	53	34	2	14	48	1.55
69811206--69811404	44	4.6	43	79	8	190	25	18	26	30	1.98
69811306--69811404	43	2.3	42	81	11	121	21	17	29	32	1.96
69813460--69813533	29	2.6	29	89	4	105	25	16	32	25	1.96
69825093--69825171	41	1.9	41	94	0	140	37	13	12	35	1.83
69831734--69831775	21	2.0	21	100	0	84	38	9	4	47	1.57
69835407--69835509	37	2.8	37	91	2	154	23	32	20	24	1.98
69835859--69836736	47	18.6	47	98	0	1677	29	25	10	33	1.90
69839414--69839642	40	5.8	40	94	1	363	26	29	23	20	1.99
69840902--69840984	41	2.0	41	97	0	157	27	28	19	24	1.98
69840968--69841070	37	2.8	37	95	0	179	25	31	20	23	1.98
69841243--69842312	47	22.6	47	97	0	1888	29	25	10	34	1.89
69844611--69844651	18	2.4	17	91	4	64	14	4	2	78	1.03
69852886--69853057	93	1.8	93	91	0	281	29	27	20	22	1.98
69852879--69853051	46	3.7	46	75	13	165	30	28	19	22	1.98
69855444--69855532	30	3.0	30	79	11	94	56	15	17	10	1.67
69855444--69855526	15	5.6	14	73	10	58	55	16	18	9	1.68
69855455--69855532	15	5.2	15	75	9	70	55	15	17	11	1.69
69858887--69859384	49	10.3	49	90	6	793	33	8	28	29	1.86
69862585--69862756	93	1.8	93	92	0	290	27	28	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69862578--69862753	46	3.8	46	74	12	180	28	28	21	21	1.98
69862630--69862772	46	3.1	45	75	15	123	29	27	19	23	1.98
69865326--69865360	17	2.0	18	88	5	54	11	42	31	14	1.81
69865936--69865980	15	3.1	15	84	6	58	77	0	22	0	0.76
69872156--69872251	48	2.0	48	83	0	120	28	17	20	33	1.96
69875841--69875992	42	3.6	42	82	3	189	32	17	23	26	1.96
69881875--69882146	47	5.8	48	76	8	233	22	29	20	27	1.98
69881875--69882148	46	5.9	47	77	7	231	22	29	20	27	1.98
69881875--69882144	140	1.9	141	82	6	343	22	29	20	27	1.98
69882398--69883351	485	2.0	485	91	0	1552	30	19	13	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290