genome.fa.s7.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  210  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72518951--72518980	6	5.0	6	100	0	60	66	16	0	16	1.25
72521154--72521290	46	3.0	46	89	0	202	26	31	8	34	1.85
72521264--72521458	47	4.1	49	84	7	249	27	29	9	33	1.89
72526670--72526698	12	2.3	13	94	5	51	58	13	6	20	1.58
72537873--72538036	42	3.9	42	78	10	181	32	14	21	31	1.93
72537882--72538038	85	1.9	84	86	4	226	31	14	22	31	1.93
72540773--72540972	75	2.7	73	76	11	199	30	16	16	37	1.91
72540696--72540964	112	2.4	113	81	3	301	29	15	16	38	1.89
72540843--72540964	37	3.3	36	76	13	133	30	16	16	36	1.91
72543690--72543746	29	2.0	29	92	0	96	52	15	10	21	1.72
72549608--72549666	21	2.8	21	89	2	82	42	5	27	25	1.76
72550566--72550692	67	1.9	67	86	0	182	37	18	20	23	1.94
72550566--72550720	67	2.3	67	81	0	175	38	17	20	23	1.93
72586270--72586506	50	4.7	50	77	7	212	26	17	25	31	1.97
72590641--72590674	18	1.9	17	88	5	50	32	14	11	41	1.82
72591916--72591988	28	2.6	29	82	6	87	26	34	15	24	1.94
72598451--72598484	18	1.9	18	88	5	52	35	17	5	41	1.74
72599716--72599836	28	4.3	28	84	4	145	24	31	14	29	1.94
72600343--72600381	20	1.9	21	84	5	53	33	23	10	33	1.88
72600976--72601089	55	2.1	56	93	1	194	34	27	9	28	1.88
72611345--72611514	85	2.0	85	98	0	331	32	14	17	36	1.89
72612016--72612055	14	2.9	14	92	3	64	52	0	5	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72612960--72612984	7	3.6	7	100	0	50	12	12	32	44	1.78
72625462--72625516	2	27.5	2	86	0	74	3	1	41	52	1.29
72638679--72638786	38	2.8	38	88	0	153	22	24	27	25	2.00
72638779--72639449	43	15.6	43	96	0	1180	11	25	29	33	1.91
72644684--72644796	38	2.9	38	89	2	154	22	24	27	25	2.00
72644700--72644807	38	2.8	38	91	0	162	20	24	27	27	1.99
72644800--72644911	43	2.6	43	95	0	206	10	25	33	30	1.90
72648218--72648406	55	3.5	53	85	5	245	21	24	19	34	1.96
72648604--72648690	44	2.0	44	86	4	122	24	26	13	35	1.93
72654856--72655044	55	3.5	53	85	5	245	21	24	19	34	1.96
72658260--72658429	46	3.7	46	77	10	193	22	20	27	30	1.98
72658257--72658427	93	1.8	93	92	0	288	22	19	28	29	1.98
72658657--72658694	19	2.0	20	85	15	53	36	0	23	39	1.55
72669648--72669685	18	2.2	18	86	9	53	26	15	13	44	1.83
72671777--72671834	23	2.5	23	88	0	89	18	17	20	43	1.89
72671975--72672047	33	2.2	34	85	2	94	24	23	24	27	2.00
72679079--72679103	13	1.9	13	100	0	50	44	0	8	48	1.32
72696394--72696445	27	1.9	27	84	0	68	30	17	19	32	1.95
72700049--72700122	26	2.9	26	84	9	107	43	10	14	31	1.80
72703882--72703950	34	2.0	34	97	0	129	23	23	8	44	1.80
72703885--72703959	34	2.2	34	90	4	116	21	25	9	44	1.82
72704690--72704873	40	4.6	41	83	11	190	25	27	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72704690--72704873	79	2.3	82	81	13	208	25	27	21	26	2.00
72708861--72708954	19	5.1	17	70	14	53	58	3	3	35	1.30
72708882--72708954	10	7.7	10	73	15	50	58	1	4	35	1.25
72709099--72709135	18	2.1	18	89	0	56	32	0	13	54	1.40
72709451--72709484	16	2.2	16	89	5	52	23	0	20	55	1.43
72709446--72709484	16	2.5	15	83	4	51	23	0	23	53	1.46
72710255--72710280	12	2.2	12	100	0	52	46	7	30	15	1.74
72717901--72717939	18	2.2	17	86	13	53	33	0	20	46	1.51
72718165--72718262	23	4.3	23	89	2	153	21	21	25	31	1.98
72718167--72718255	45	2.0	45	93	0	151	20	22	25	31	1.98
72725273--72725311	18	2.2	17	86	13	53	33	0	20	46	1.51
72725537--72725634	23	4.3	23	89	2	153	21	21	25	31	1.98
72725539--72725627	45	2.0	45	93	0	151	20	22	25	31	1.98
72726936--72727137	53	3.8	53	77	7	192	21	23	18	36	1.95
72726915--72727144	54	4.3	54	77	3	230	20	23	17	38	1.93
72729588--72729613	11	2.4	11	100	0	52	65	0	0	34	0.93
72734805--72734913	54	2.0	54	94	0	191	22	33	1	43	1.64
72739720--72739758	20	1.9	21	84	5	53	30	12	0	56	1.37
72752358--72752891	45	11.9	44	72	11	287	32	18	20	27	1.96
72752593--72752846	134	1.9	134	83	4	334	31	20	21	26	1.98
72753707--72753745	20	1.9	21	84	5	53	30	12	0	56	1.37
72764030--72764062	16	2.1	16	94	0	57	21	18	12	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72781502--72781541	21	1.9	21	100	0	80	37	37	15	10	1.80
72784039--72784078	14	2.9	14	96	0	71	30	12	15	42	1.83
72788688--72789091	47	8.7	45	74	12	300	26	19	29	25	1.98
72788696--72788997	91	3.3	92	88	5	407	26	18	29	25	1.98
72791270--72791392	64	1.9	66	83	5	160	29	14	31	24	1.95
72794273--72794324	26	2.0	26	100	0	104	30	34	15	19	1.93
72798184--72798361	27	6.6	27	84	3	205	29	28	15	26	1.96
72798205--72798360	82	1.9	81	88	3	233	29	28	15	26	1.96
72806247--72806424	27	6.6	27	84	3	205	29	28	15	26	1.96
72806268--72806423	82	1.9	81	88	3	233	29	28	15	26	1.96
72812674--72812788	45	2.6	43	80	13	135	25	19	29	26	1.98
72815944--72816022	37	2.1	37	90	0	122	25	31	18	24	1.98
72816141--72816898	47	16.1	47	94	0	1102	26	31	10	31	1.89
72822461--72822682	67	3.4	65	72	11	202	25	28	14	31	1.95
72826177--72826438	131	2.0	131	100	0	524	31	20	15	32	1.94
72827383--72827436	28	1.9	28	88	7	83	35	18	3	42	1.68
72843367--72843396	15	2.0	15	100	0	60	33	20	13	33	1.91
72846275--72846397	45	2.8	45	84	6	137	23	26	24	25	2.00
72846727--72846838	43	2.6	43	92	0	179	31	33	24	11	1.91
72846831--72846914	38	2.2	38	82	0	105	32	25	20	22	1.98
72854612--72854660	21	2.2	22	85	7	64	73	4	2	20	1.10
72854665--72854710	19	2.4	20	89	7	69	71	2	26	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72854667--72854704	4	9.8	4	85	5	51	73	2	23	0	0.95
72858941--72859038	40	2.5	40	91	5	155	22	30	24	22	1.99
72863179--72863228	23	2.2	22	78	3	55	6	22	2	70	1.20
72871559--72871584	11	2.4	11	100	0	52	50	7	42	0	1.31
72872247--72872297	3	17.0	3	87	0	75	35	0	3	60	1.15
72873123--72873175	26	2.0	26	100	0	106	22	32	22	22	1.98
72876596--72876912	64	4.9	64	79	8	275	24	29	14	31	1.95
72876596--72876912	132	2.4	129	79	8	311	24	29	14	31	1.95
72884720--72884778	30	2.0	30	83	6	75	44	1	0	54	1.10
72885912--72885978	33	2.0	33	94	0	116	31	14	31	22	1.94
72897846--72897905	33	1.9	32	83	10	79	35	8	11	45	1.71
72904794--72904825	14	2.3	14	94	0	55	43	12	12	31	1.80
72914633--72914664	14	2.3	15	89	10	50	46	3	0	50	1.17
72916722--72916755	14	2.4	14	95	5	59	52	0	20	26	1.46
72918879--72919019	49	2.9	49	82	0	174	27	34	17	20	1.95
72928270--72928315	22	2.1	22	100	0	92	52	23	0	23	1.48
72932117--72932151	17	2.0	18	88	5	54	11	25	45	17	1.81
72945885--72946017	66	2.0	65	94	1	230	28	16	19	35	1.94
72949951--72950001	26	2.0	26	96	0	93	43	9	17	29	1.81
72954250--72954333	28	3.2	27	65	25	72	25	16	28	29	1.97
72954145--72954391	49	5.0	50	82	2	264	28	17	25	27	1.98
72954152--72954342	101	1.9	100	86	1	274	26	17	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72959660--72959776	43	2.8	42	75	5	119	21	17	30	29	1.96
72968360--72968634	70	3.9	70	100	0	550	60	11	8	18	1.56
72972812--72972963	27	5.6	27	92	3	232	30	28	13	27	1.94
72972812--72972988	55	3.2	55	89	0	246	31	29	12	26	1.93
72980809--72980960	27	5.6	27	92	3	232	30	28	13	27	1.94
72980809--72980985	55	3.2	55	89	0	246	31	29	12	26	1.93
72982740--72982792	25	2.1	25	100	0	106	50	15	0	33	1.44
72984506--72984666	45	3.7	43	76	8	150	27	28	19	24	1.98
72984827--72984872	23	2.0	24	83	12	60	45	15	2	36	1.58
72985253--72985283	15	2.1	15	93	0	53	54	25	0	19	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290