genome.fa.s7.2.7.7.80.10.50.1000.279.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  279  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96452401--96452452	27	2.0	26	84	3	68	17	26	21	34	1.95
96452468--96452519	27	2.0	26	84	3	68	17	26	21	34	1.95
96452535--96452586	27	2.0	26	84	3	68	17	26	21	34	1.95
96452602--96452653	27	2.0	26	84	3	68	17	26	21	34	1.95
96452669--96452720	27	2.0	26	84	3	68	17	26	21	34	1.95
96452736--96452787	27	2.0	26	84	3	68	17	26	21	34	1.95
96452803--96452854	27	2.0	26	84	3	68	17	26	21	34	1.95
96452870--96452921	27	2.0	26	84	3	68	17	26	21	34	1.95
96452937--96452988	27	2.0	26	84	3	68	17	26	21	34	1.95
96453004--96453055	27	2.0	26	84	3	68	17	26	21	34	1.95
96453071--96453122	27	2.0	26	84	3	68	17	26	21	34	1.95
96455269--96455421	43	3.6	42	78	13	168	22	18	28	29	1.98
96455262--96455393	42	3.1	40	76	14	131	22	17	29	30	1.97
96462525--96462683	44	3.7	42	75	13	139	30	26	20	23	1.98
96465075--96465103	14	2.0	15	93	6	51	48	6	20	24	1.74
96467624--96467847	27	8.6	27	76	10	169	29	28	16	26	1.97
96467645--96467847	82	2.6	76	80	8	225	28	28	16	27	1.97
96467757--96467849	46	2.0	46	95	0	168	26	26	18	27	1.98
96473606--96473643	10	3.9	10	82	6	51	57	5	0	36	1.21
96473607--96473643	19	1.9	19	88	0	56	56	5	0	37	1.22
96475937--96476076	49	2.8	49	82	4	174	25	18	27	28	1.98
96480412--96480464	23	2.3	23	96	0	97	15	30	30	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96487909--96487945	10	3.8	10	80	20	51	81	0	5	13	0.86
96487908--96487945	19	2.1	18	95	5	67	78	0	5	15	0.91
96493501--96493525	13	1.9	13	100	0	50	40	24	0	36	1.55
96495074--96495132	27	2.2	26	82	14	68	32	8	15	44	1.76
96499498--96499649	43	3.5	43	80	1	162	27	17	25	28	1.98
96504284--96504324	22	1.9	21	85	5	55	56	0	0	43	0.99
96507766--96507892	7	18.0	7	76	10	80	37	39	0	22	1.60
96507881--96507934	21	2.5	23	74	14	62	46	25	1	25	1.63
96507807--96507944	21	6.6	21	68	12	52	42	33	1	23	1.63
96508398--96508425	12	2.3	12	100	0	56	46	32	14	7	1.71
96515411--96515491	29	2.8	29	83	5	94	27	11	30	30	1.91
96515424--96515492	28	2.4	29	85	2	95	27	10	30	31	1.90
96520874--96520962	44	2.0	44	100	0	178	22	25	6	44	1.77
96530118--96530249	48	2.7	47	82	6	149	25	31	18	24	1.97
96537477--96537601	48	2.7	46	80	7	139	24	30	16	28	1.97
96537523--96537695	46	3.8	44	75	11	154	23	28	19	27	1.98
96537427--96537693	93	2.8	92	81	7	254	24	28	18	28	1.98
96549581--96549608	14	2.0	14	100	0	56	28	21	0	50	1.49
96552542--96552722	27	6.7	27	85	0	218	38	19	19	21	1.93
96552542--96552739	81	2.4	81	86	1	272	38	19	20	21	1.93
96553071--96553129	18	3.3	18	80	0	73	22	16	18	42	1.89
96560829--96560911	29	2.9	29	87	0	103	27	16	28	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96578840--96578953	43	2.7	42	80	5	122	26	17	25	30	1.97
96584898--96585020	66	1.9	64	91	1	192	43	9	27	18	1.82
96594351--96594801	93	4.8	93	96	0	812	22	19	28	29	1.98
96601222--96601261	21	1.9	21	85	10	55	32	27	17	22	1.96
96612777--96612828	27	2.0	26	84	3	68	17	26	21	34	1.95
96615703--96615775	33	2.2	33	95	0	128	26	28	20	24	1.99
96616050--96616101	25	2.1	25	92	3	88	26	19	21	32	1.97
96616135--96616199	32	2.0	32	82	5	78	35	15	12	36	1.85
96616157--96616209	11	5.0	11	86	6	74	28	20	13	37	1.90
96616149--96616197	21	2.3	21	93	6	82	34	18	10	36	1.85
96616322--96616436	27	4.3	27	80	6	117	24	22	18	34	1.96
96616322--96616437	54	2.1	55	87	4	173	24	23	18	34	1.96
96616440--96616561	27	4.5	27	88	2	165	43	11	20	24	1.85
96620770--96620867	44	2.3	42	82	8	117	24	20	24	30	1.98
96623692--96623811	39	3.1	39	78	2	134	40	22	4	32	1.73
96625032--96625082	21	2.3	22	80	6	59	49	13	9	27	1.74
96625735--96625878	26	5.5	26	86	3	182	31	23	7	37	1.83
96631191--96631471	81	3.5	81	85	2	368	30	10	20	37	1.87
96631177--96631471	27	11.0	27	80	2	324	30	10	21	36	1.88
96633737--96633797	30	2.0	30	90	0	95	42	6	22	27	1.78
96638331--96638680	27	13.0	27	83	4	397	32	12	18	36	1.88
96638384--96638698	134	2.3	135	85	3	420	32	11	18	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96642973--96643066	27	3.5	27	83	0	116	28	11	18	41	1.85
96642973--96643077	54	1.9	54	86	0	147	27	14	18	40	1.89
96643386--96643437	6	8.8	6	79	12	63	19	19	13	48	1.81
96643386--96643437	17	2.9	18	83	8	63	19	19	13	48	1.81
96643386--96643438	23	2.2	24	90	3	81	20	18	13	47	1.82
96644243--96644302	30	2.0	30	100	0	120	36	20	6	36	1.79
96656504--96656572	25	2.8	25	82	4	77	24	21	23	30	1.99
96658975--96659088	25	4.6	25	79	4	113	29	20	21	28	1.98
96658973--96659069	50	1.9	50	89	4	151	30	18	21	28	1.97
96658971--96659088	50	2.4	50	84	5	150	31	20	21	27	1.98
96664555--96664661	25	4.2	25	86	4	144	31	18	19	29	1.96
96665047--96665087	8	5.0	8	83	16	57	36	14	12	36	1.84
96670337--96670448	27	4.1	27	87	5	138	37	19	22	20	1.94
96670359--96670448	28	3.3	28	90	4	139	36	23	21	18	1.95
96682251--96682310	30	2.0	30	90	0	93	38	8	25	28	1.84
96682992--96683038	23	2.0	23	100	0	94	40	0	29	29	1.57
96685934--96686125	47	4.1	47	91	2	282	32	12	29	25	1.92
96685959--96686034	22	3.3	22	67	22	66	32	13	28	25	1.93
96686008--96686083	23	3.2	25	62	24	63	28	13	34	23	1.92
96686329--96686437	37	2.9	37	94	0	182	24	19	29	26	1.98
96689894--96689930	18	2.0	19	89	5	58	67	0	0	32	0.91
96690219--96690309	19	4.9	19	90	8	152	36	14	10	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96690212--96690309	35	2.7	37	86	12	141	35	15	10	38	1.81
96690661--96690859	45	4.5	45	85	2	258	24	27	15	33	1.95
96690678--96690843	88	1.9	89	89	1	262	25	28	15	30	1.95
96690666--96690947	133	2.1	130	81	9	327	24	25	16	32	1.96
96690873--96691089	78	2.8	78	89	2	337	25	23	18	32	1.97
96691270--96691535	45	5.9	45	76	8	245	25	26	16	31	1.97
96691948--96691978	13	2.4	13	94	0	53	12	19	12	54	1.70
96695764--96695832	36	1.9	36	100	0	138	21	31	11	34	1.89
96696069--96696116	24	2.0	24	100	0	96	41	0	12	45	1.42
96703129--96703165	18	2.0	19	89	5	58	67	0	0	32	0.91
96703417--96703474	22	2.6	22	81	7	64	41	15	5	37	1.70
96703446--96703543	35	2.7	37	87	12	150	35	16	10	37	1.82
96703453--96703543	19	4.9	19	92	8	161	36	15	10	37	1.83
96707252--96707761	27	18.6	27	81	3	572	39	20	9	30	1.84
96707252--96707761	54	9.3	54	85	5	639	39	20	9	30	1.84
96707314--96707831	27	19.3	27	81	2	499	39	20	9	30	1.84
96707713--96707870	81	2.0	81	81	5	185	38	22	6	32	1.81
96707861--96708072	27	7.9	27	84	2	257	38	18	19	23	1.93
96707852--96708072	81	2.7	81	85	3	293	38	18	19	23	1.93
96708321--96708371	27	1.9	26	84	4	66	17	27	19	35	1.94
96708387--96708450	33	2.0	32	84	3	83	20	23	20	35	1.96
96708590--96708677	6	14.3	6	70	17	56	21	17	13	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96708590--96708668	31	2.5	31	85	0	104	21	17	12	48	1.80
96711750--96711836	34	2.6	34	78	7	95	28	24	24	22	1.99
96717322--96717351	5	6.0	5	100	0	60	20	0	0	80	0.72
96718734--96718812	39	2.0	39	97	0	149	31	24	17	26	1.97
96721224--96721339	27	4.3	27	83	5	144	37	21	23	18	1.94
96721224--96721338	55	2.1	55	87	4	162	37	20	23	18	1.94
96721442--96721503	26	2.4	26	86	5	81	29	11	22	37	1.89
96722530--96722586	18	3.2	18	75	7	62	64	0	31	3	1.10
96725024--96725096	30	2.4	30	83	0	92	45	12	26	16	1.82
96725015--96725176	80	2.0	80	83	7	204	43	11	23	20	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290