genome.fa.s7.2.7.7.80.10.50.1000.272.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  272  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93888820--93888875	28	2.0	28	82	3	67	16	19	42	21	1.89
93896969--93897153	40	4.6	39	83	5	196	24	22	27	24	2.00
93896969--93897153	79	2.3	81	84	7	227	24	22	27	24	2.00
93897022--93897176	79	2.0	79	84	7	208	26	21	27	25	1.99
93899907--93900059	43	3.5	44	73	12	147	24	16	26	33	1.96
93903192--93903309	27	4.4	27	77	3	82	29	12	24	33	1.92
93903250--93903309	26	2.3	26	85	0	75	26	13	26	33	1.93
93906586--93906633	20	2.3	21	92	3	80	35	10	18	35	1.85
93906681--93906775	25	3.8	25	94	4	165	27	26	21	25	1.99
93906680--93906788	25	4.4	24	89	6	139	29	24	21	24	1.99
93907022--93907080	31	1.9	31	89	3	93	28	15	27	28	1.96
93925320--93925399	30	2.7	30	83	11	101	12	17	15	55	1.70
93925329--93925408	15	5.4	15	78	12	85	11	17	13	57	1.65
93935606--93936078	27	17.6	27	88	0	687	36	18	19	25	1.94
93936454--93936512	22	2.7	22	83	0	73	20	27	22	30	1.98
93936670--93936777	27	4.0	27	81	8	105	21	23	19	36	1.95
93936671--93936776	54	2.0	53	81	5	124	21	23	17	36	1.95
93944580--93944677	40	2.5	40	91	5	171	31	25	19	23	1.98
93950274--93950534	46	5.6	46	75	15	286	21	19	28	29	1.98
93950320--93950582	47	5.6	47	75	15	285	22	19	29	28	1.98
93950271--93950589	93	3.4	93	99	0	620	21	19	29	29	1.98
93953226--93953294	26	2.7	26	95	0	129	26	28	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93957101--93957519	29	14.6	28	74	13	300	39	11	26	22	1.88
93957096--93957194	51	1.9	51	87	0	144	40	11	25	23	1.87
93957181--93957373	61	3.2	61	94	2	320	38	12	29	19	1.88
93957171--93957519	90	3.9	89	77	11	301	38	11	26	22	1.89
93957409--93957543	55	2.4	55	83	8	155	39	12	26	21	1.89
93960433--93960468	18	2.1	18	89	5	56	33	25	0	41	1.55
93967674--93967700	13	2.1	13	100	0	54	14	33	29	22	1.94
93968959--93968983	12	2.1	12	100	0	50	52	24	0	24	1.48
93969508--93969665	39	4.1	39	93	0	262	26	24	22	27	2.00
93972789--93973012	37	6.1	37	94	0	376	24	18	30	26	1.98
93973856--93973925	32	2.2	32	94	0	122	44	15	5	34	1.71
93981745--93981902	39	4.1	39	85	3	210	25	26	22	25	2.00
93981750--93981907	78	2.0	78	90	0	244	25	25	21	27	1.99
93984238--93984475	39	6.1	39	95	0	413	21	30	25	22	1.99
93990991--93991111	39	3.1	39	86	4	174	23	31	23	21	1.98
93996502--93996635	38	3.5	39	74	11	98	29	26	19	23	1.98
93999575--93999687	40	2.8	40	94	0	190	26	25	25	22	2.00
94003946--94004053	53	2.0	53	98	0	207	22	21	21	35	1.96
94004372--94004407	17	2.1	17	94	0	63	22	44	8	25	1.80
94004719--94004759	15	2.7	15	88	0	55	4	39	2	53	1.35
94014718--94014772	15	3.8	15	68	18	53	21	23	1	52	1.56
94015884--94015983	48	2.1	48	96	0	182	18	15	27	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94016522--94016585	28	2.3	28	94	0	110	18	15	37	28	1.92
94016873--94017011	69	2.0	69	98	0	269	49	13	11	25	1.75
94016970--94018208	53	23.4	53	84	6	1376	38	18	10	32	1.84
94016970--94018207	265	4.7	265	86	4	1538	38	18	10	32	1.84
94018160--94018252	27	3.4	27	84	10	102	37	16	16	30	1.90
94026642--94026746	46	2.3	46	85	5	131	23	31	17	27	1.97
94029232--94029297	29	2.3	29	84	5	80	28	28	12	30	1.93
94029119--94029442	174	1.9	174	97	0	612	32	24	13	29	1.93
94029399--94029477	29	2.7	30	82	13	110	30	30	13	25	1.94
94044236--94044286	27	1.9	26	84	4	66	19	27	17	35	1.94
94045814--94045986	79	2.2	79	81	10	210	26	26	20	26	1.99
94045830--94046023	40	4.8	40	81	5	205	25	27	21	25	1.99
94054040--94054227	40	4.7	40	76	9	186	27	28	19	25	1.99
94060801--94060852	22	2.4	22	96	0	95	57	11	9	21	1.62
94064168--94064207	8	5.0	8	87	0	62	25	32	37	5	1.77
94064168--94064207	16	2.5	16	100	0	80	25	32	37	5	1.77
94070164--94070271	38	2.8	38	84	2	119	29	25	22	22	1.99
94073805--94073982	27	6.6	27	83	3	196	29	28	15	27	1.96
94073826--94073981	82	1.9	81	88	3	233	29	28	15	26	1.96
94081942--94082119	27	6.6	27	84	3	205	29	28	15	26	1.96
94081963--94082118	82	1.9	81	88	3	233	29	28	15	26	1.96
94090076--94090378	27	11.2	27	77	8	127	28	8	20	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94090038--94090378	54	6.3	54	77	4	283	28	9	20	41	1.83
94090076--94090378	81	3.7	80	77	6	245	28	8	20	42	1.80
94090629--94090714	45	1.9	45	95	0	154	26	22	25	25	2.00
94095649--94095673	13	1.9	13	100	0	50	8	44	32	16	1.76
94098495--94098616	47	2.6	47	96	0	217	36	13	23	25	1.92
94098595--94098802	54	3.9	54	81	6	224	35	16	25	23	1.95
94098595--94098802	55	3.9	54	80	8	208	35	16	25	23	1.95
94103065--94103204	27	5.2	27	85	4	185	35	15	20	27	1.93
94103942--94104049	27	4.0	26	83	5	108	20	23	20	36	1.95
94103942--94104049	54	2.0	53	81	1	126	20	23	20	36	1.95
94104167--94104291	6	20.3	6	69	16	60	18	18	13	49	1.79
94104195--94104283	37	2.4	37	81	3	108	20	19	10	50	1.75
94106255--94106366	58	1.9	58	94	0	197	27	13	27	31	1.94
94111758--94111821	29	2.2	29	91	0	101	35	7	34	21	1.83
94116525--94116678	42	3.6	42	80	8	168	32	16	24	26	1.96
94119865--94120089	40	5.7	40	81	4	195	24	21	29	25	1.99
94119918--94120089	80	2.2	79	86	1	227	23	20	30	25	1.99
94119918--94120087	40	4.3	40	84	1	198	23	21	30	25	1.99
94119940--94120122	79	2.3	80	81	1	217	25	20	29	24	1.99
94128422--94128591	40	4.3	40	89	0	207	23	21	28	26	1.99
94128369--94128593	80	2.8	79	82	3	245	24	20	28	26	1.99
94128447--94128626	79	2.3	80	82	3	213	25	20	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94136309--94136478	40	4.3	40	89	0	207	23	21	28	26	1.99
94136256--94136480	80	2.8	79	82	3	245	24	20	28	26	1.99
94136334--94136513	79	2.3	80	82	3	213	25	20	28	25	1.99
94136851--94137075	113	2.0	113	99	0	441	20	17	23	38	1.93
94142832--94143006	87	2.0	87	98	0	341	28	16	24	30	1.96
94143317--94143520	102	2.0	102	97	2	385	37	17	18	26	1.93
94143790--94144004	107	2.0	107	99	0	421	23	12	23	40	1.88
94144667--94144836	40	4.3	40	82	1	189	22	22	30	24	1.99
94151678--94151869	40	4.8	40	90	0	285	23	21	28	25	1.99
94155129--94155602	47	10.1	47	98	0	876	31	8	30	29	1.87
94170504--94170964	48	9.6	48	86	2	604	34	29	17	18	1.93
94173166--94173263	34	2.9	34	87	0	133	27	25	20	26	1.99
94173654--94173768	27	4.3	27	81	0	122	18	19	21	40	1.91
94173654--94173767	54	2.1	54	85	0	147	18	19	21	40	1.92
94173725--94173781	27	2.1	27	87	6	80	22	15	24	36	1.94
94173762--94173944	27	6.8	27	86	0	240	36	16	14	32	1.90
94175999--94176086	6	14.3	6	71	17	56	46	13	20	19	1.83
94176020--94176086	25	2.7	25	85	0	98	44	13	22	19	1.85
94176200--94176273	27	2.8	26	81	4	85	36	16	24	22	1.94
94176229--94176291	26	2.4	26	86	5	83	41	22	22	14	1.89
94176229--94176301	26	2.8	26	83	8	69	39	21	23	15	1.91
94176442--94176506	22	3.0	22	77	8	69	30	23	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94176934--94177400	27	17.3	27	82	5	457	24	19	18	37	1.94
94176952--94177391	81	5.4	81	87	1	596	23	19	19	37	1.94
94176948--94177391	54	8.2	54	83	1	559	24	19	19	37	1.94
94182361--94182423	6	10.3	6	74	16	58	49	14	19	17	1.80
94182543--94182613	27	2.7	26	89	4	106	38	18	25	18	1.93
94183216--94183674	27	17.0	27	83	4	471	23	20	19	37	1.95
94183234--94183674	81	5.4	81	88	1	632	23	19	19	37	1.95
94183232--94183674	54	8.2	54	84	1	564	23	19	19	37	1.95
94183730--94184003	27	10.3	27	80	10	269	31	9	18	40	1.84
94183730--94184003	53	5.1	53	82	6	297	31	9	18	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290