genome.fa.s7.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  201  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69187708--69187861	67	2.4	64	83	6	186	23	31	16	29	1.96
69189673--69189697	13	1.9	13	100	0	50	48	0	12	40	1.40
69194109--69194165	26	2.2	26	84	6	71	45	8	14	31	1.75
69202270--69202900	80	7.9	80	97	0	1133	38	20	11	29	1.88
69202324--69202902	53	10.8	53	78	8	293	38	20	11	29	1.88
69202936--69203873	54	17.4	54	94	0	1462	36	15	20	26	1.93
69204318--69204382	22	3.0	22	80	8	78	20	23	23	33	1.97
69204541--69204642	27	3.8	26	85	5	114	18	23	20	37	1.94
69204808--69204867	6	9.8	6	76	16	61	18	20	15	46	1.84
69204779--69204858	31	2.5	31	91	2	124	20	18	12	48	1.80
69206836--69207380	27	20.4	27	77	11	493	39	21	9	29	1.86
69206813--69207392	80	7.2	80	95	1	961	39	21	9	29	1.85
69207376--69207698	27	12.0	27	85	1	396	37	16	19	26	1.93
69207212--69207689	54	8.9	53	75	11	206	38	18	15	27	1.91
69208133--69208197	22	3.0	22	75	8	60	21	21	21	35	1.96
69208330--69208430	27	3.8	26	82	5	103	17	23	20	37	1.94
69208567--69208655	6	14.3	6	71	19	67	19	17	14	48	1.81
69208567--69208671	31	3.4	31	81	5	115	19	17	14	49	1.79
69212896--69212933	19	2.0	19	100	0	76	42	21	5	31	1.75
69213033--69213187	77	2.0	76	85	3	204	43	7	16	32	1.77
69213243--69213490	93	2.7	92	83	4	286	39	6	17	36	1.76
69213930--69213968	20	2.0	20	100	0	78	41	5	15	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69215593--69215625	17	1.9	17	88	11	50	39	9	9	42	1.68
69221626--69221723	35	2.7	37	87	12	150	37	10	16	35	1.82
69221626--69221716	19	4.9	19	92	8	161	37	10	15	36	1.83
69221626--69221739	19	5.8	22	87	10	96	36	9	15	37	1.81
69222008--69222041	18	1.9	17	88	5	50	29	0	0	70	0.87
69241400--69241439	18	2.2	18	86	0	53	40	2	2	55	1.27
69245230--69245264	17	2.1	17	100	0	70	17	42	0	40	1.49
69257161--69257190	5	6.0	5	100	0	60	80	0	0	20	0.72
69258164--69258210	20	2.4	18	86	10	58	38	0	2	59	1.09
69258164--69258210	18	2.4	20	82	13	62	38	0	2	59	1.09
69259242--69259288	20	2.4	18	86	10	58	38	0	2	59	1.09
69259242--69259288	18	2.4	20	82	13	62	38	0	2	59	1.09
69262669--69262821	40	3.8	40	83	4	177	35	20	19	23	1.95
69262994--69263038	21	2.1	21	84	8	56	22	0	28	48	1.50
69263212--69263261	14	3.6	14	83	5	57	28	2	24	46	1.64
69264120--69264170	7	7.0	7	88	6	75	66	1	0	31	1.03
69264120--69264178	15	4.0	15	82	4	75	62	1	0	35	1.05
69264120--69264178	22	2.7	22	86	0	91	62	1	0	35	1.05
69264312--69264427	41	2.9	41	81	8	141	35	15	19	29	1.93
69269552--69269724	46	3.7	46	76	10	181	23	20	26	30	1.98
69288396--69288573	46	3.8	46	71	17	145	28	20	29	21	1.98
69311545--69311701	43	3.6	44	80	12	182	26	18	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69314962--69315043	26	3.2	26	98	0	155	30	8	26	34	1.86
69316636--69316766	27	4.9	26	79	11	142	19	25	20	34	1.96
69316633--69316775	54	2.6	54	91	2	216	20	24	20	34	1.96
69316869--69317454	293	2.0	293	97	0	1118	19	18	25	36	1.94
69323921--69324061	27	5.2	27	78	14	157	18	24	23	34	1.96
69323918--69324061	54	2.7	54	91	2	218	18	24	23	34	1.96
69323921--69324079	81	2.0	80	80	10	182	19	24	22	33	1.97
69328155--69328200	14	3.3	14	84	0	56	34	0	36	28	1.58
69340827--69340962	40	3.4	39	81	10	152	25	28	20	25	1.99
69345235--69345273	18	2.1	19	85	9	53	43	15	0	41	1.46
69347534--69347742	41	5.2	40	85	3	107	25	26	23	24	2.00
69347557--69347742	41	4.6	41	87	4	252	24	25	24	25	2.00
69347587--69347740	81	1.9	82	89	4	240	25	24	24	25	2.00
69350902--69350927	13	2.0	13	100	0	52	38	30	15	15	1.88
69358665--69358716	12	4.1	12	75	20	52	46	0	1	51	1.12
69360719--69360766	24	2.1	22	81	14	53	20	0	31	47	1.50
69361722--69361774	12	4.3	13	77	18	51	50	1	1	45	1.23
69361709--69361767	29	2.0	29	93	0	100	54	1	3	40	1.27
69363367--69363398	15	2.1	15	94	0	55	75	9	0	15	1.05
69375218--69375253	18	2.0	18	88	0	54	47	8	2	41	1.48
69375735--69375912	27	6.6	27	82	6	180	26	14	29	29	1.95
69375732--69375913	82	2.2	81	82	3	231	26	14	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69375817--69375923	27	3.9	27	85	1	70	26	14	28	30	1.95
69379497--69379542	22	2.1	22	88	11	69	32	0	2	65	1.05
69379566--69379605	21	2.0	20	90	5	62	42	0	2	55	1.13
69379515--69379667	57	2.6	57	80	9	168	41	0	4	53	1.26
69382324--69382382	16	3.7	16	81	0	73	30	27	1	40	1.66
69384733--69384797	20	3.2	20	69	4	67	29	24	13	32	1.94
69384702--69384806	41	2.6	41	93	0	183	32	22	16	28	1.96
69384742--69384811	21	3.4	21	70	4	70	31	24	17	27	1.97
69384772--69384914	72	2.0	72	97	0	268	25	25	20	28	1.99
69384937--69385267	44	7.6	44	68	14	184	19	22	21	37	1.94
69384936--69385280	87	4.0	87	89	1	467	19	21	21	37	1.95
69385381--69385570	44	4.3	44	75	9	156	20	22	21	36	1.95
69389251--69390484	620	2.0	620	98	0	2387	28	22	18	30	1.98
69395806--69395947	3	47.0	3	92	6	234	65	2	0	32	1.04
69396046--69396077	14	2.3	14	94	0	55	81	0	0	18	0.70
69396483--69396562	38	2.1	38	92	0	133	22	7	47	22	1.76
69412460--69412533	26	2.8	27	87	6	107	44	13	14	27	1.83
69413694--69413724	16	1.9	16	93	0	53	9	9	9	70	1.33
69415033--69415066	12	2.9	12	86	4	52	32	0	0	67	0.91
69415190--69415252	30	2.1	30	93	0	108	55	14	3	26	1.54
69416145--69416202	16	3.6	16	75	9	55	51	1	1	44	1.21
69422204--69422374	93	1.8	93	96	0	315	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69422199--69422371	46	3.7	46	80	13	219	28	28	21	21	1.98
69422794--69422853	30	2.0	30	90	0	93	30	25	8	36	1.85
69429277--69429448	93	1.8	93	96	0	317	27	29	21	20	1.98
69429270--69429445	46	3.8	46	79	12	216	28	29	21	20	1.98
69434496--69434566	21	3.2	21	71	11	61	56	5	2	35	1.38
69443470--69443588	61	1.9	63	80	10	138	31	15	21	32	1.94
69444577--69444609	14	2.4	14	94	0	57	75	0	24	0	0.80
69444882--69444993	47	2.5	46	83	4	129	32	8	23	36	1.84
69448907--69448964	21	2.8	21	78	5	64	13	12	36	37	1.82
69450937--69450995	26	2.3	24	78	18	57	49	13	3	33	1.59
69453294--69453642	186	1.9	186	87	1	511	35	16	17	30	1.92
69453921--69453986	19	3.4	19	81	8	71	53	6	1	39	1.35
69453937--69453992	19	2.9	19	84	7	60	51	3	1	42	1.29
69453962--69454057	19	4.8	20	71	17	65	56	3	0	40	1.15
69454350--69454389	21	1.9	21	89	0	62	60	12	7	20	1.56
69455859--69456042	33	5.5	33	67	8	95	31	15	24	28	1.96
69455824--69456051	101	2.3	101	82	4	273	30	15	24	29	1.96
69458491--69458554	31	1.9	32	87	12	94	42	3	7	46	1.48
69459160--69459207	24	2.0	24	100	0	96	20	25	33	20	1.97
69460578--69460795	90	2.4	90	88	0	301	40	18	6	33	1.78
69460908--69460953	11	4.2	11	82	0	56	32	10	10	45	1.74
69460908--69460953	22	2.1	22	87	0	65	32	10	10	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69469240--69469275	17	2.1	18	89	5	56	47	5	5	41	1.50
69470372--69470479	54	2.0	54	98	0	207	35	11	19	34	1.87
69477623--69477748	42	2.9	43	77	5	139	33	25	18	23	1.97
69489185--69489275	32	3.0	30	82	9	96	17	23	2	57	1.51
69489781--69489855	32	2.4	30	82	8	96	50	5	0	44	1.24
69496475--69496507	17	1.9	17	93	0	57	51	12	6	30	1.63
69506740--69506803	23	2.8	22	75	15	67	76	1	10	10	1.09
69506746--69506792	17	2.8	17	86	0	67	80	2	8	8	0.97
69510599--69510679	40	2.0	40	97	0	153	33	17	13	35	1.89
69517497--69517661	87	1.9	86	82	8	210	34	23	15	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290