Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  264  of  290  ( 34714 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91281462--91281573
28
4.0
28
80
6
120
26
15
31
26
1.96
91281459--91281570
57
2.0
57
82
8
140
27
15
31
25
1.95
91285941--91286045
40
2.6
40
82
8
124
21
16
23
38
1.93
91287564--91287604
20
2.0
20
100
0
82
24
21
24
29
1.99
91292984--91293524
135
4.0
135
99
0
1046
36
7
24
31
1.83
91293855--91293975
40
3.0
40
81
0
143
23
19
23
34
1.96
91293869--91294002
40
3.3
40
82
2
108
24
20
22
32
1.97
91293987--91294042
28
2.0
28
85
0
76
28
16
25
30
1.96
91294557--91294596
21
1.9
21
100
0
80
35
0
20
45
1.51
91297375--91297449
28
2.7
28
82
0
105
25
33
16
25
1.95
91320223--91320334
43
2.6
42
80
5
127
32
16
22
29
1.95
91320640--91320711
24
3.0
24
86
10
94
27
22
15
34
1.94
91322117--91322903
40
19.7
40
100
0
1574
22
25
20
32
1.98
91325037--91325068
5
6.6
5
92
7
57
81
0
0
18
0.70
91325038--91325068
9
3.3
9
95
4
53
80
0
0
19
0.71
91326566--91326775
98
2.2
97
77
4
217
34
11
9
43
1.74
91326584--91326765
98
1.9
97
81
5
224
32
13
9
44
1.76
91329003--91329028
3
8.7
3
100
0
52
69
0
0
30
0.89
91329064--91329161
20
4.9
19
73
16
67
58
1
5
35
1.27
91329105--91329165
26
2.3
27
80
8
81
63
1
3
31
1.20
91329112--91329177
29
2.3
29
84
10
82
63
1
3
31
1.19
91329088--91329165
3
26.0
3
75
14
72
61
1
5
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91329829--91329874
23
2.0
22
84
12
58
80
0
8
10
0.91
91330689--91331028
44
7.6
44
70
9
179
30
21
17
30
1.97
91330688--91331025
133
2.5
132
81
6
378
30
21
18
30
1.97
91341674--91341763
43
2.1
43
93
2
155
50
13
16
20
1.78
91342770--91342835
24
3.0
21
77
14
62
59
0
7
33
1.26
91342967--91343041
3
25.0
3
74
15
66
62
2
4
30
1.27
91342967--91343034
29
2.3
30
87
5
93
61
2
4
30
1.30
91342941--91343050
17
6.4
17
71
16
75
59
1
3
35
1.26
91342845--91343270
213
2.0
210
95
4
766
59
2
10
27
1.43
91343181--91343253
3
25.0
3
78
10
80
64
1
4
30
1.20
91344769--91344818
26
1.9
26
87
0
73
46
10
10
34
1.71
91344912--91344987
38
2.1
38
92
5
129
27
2
17
52
1.57
91348909--91349118
40
5.3
39
89
4
242
25
21
27
25
1.99
91348856--91349118
120
2.2
120
82
4
309
25
21
27
25
1.99
91348857--91349153
80
3.7
80
81
6
230
26
21
27
24
1.99
91356836--91357059
40
5.6
40
91
1
308
24
20
28
26
1.99
91356797--91357059
80
3.3
80
85
3
318
23
20
28
26
1.99
91356797--91357059
120
2.2
120
82
4
318
23
20
28
26
1.99
91359686--91359720
14
2.3
15
90
9
54
45
2
0
51
1.16
91361124--91361167
20
2.1
21
83
4
54
2
20
2
75
1.03
91361120--91361178
20
3.0
20
69
18
52
1
25
1
71
1.05
91361873--91361934
29
2.1
29
96
0
115
24
17
38
19
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91363592--91363626
15
2.3
15
90
0
52
22
5
5
65
1.36
91366942--91367011
35
2.0
35
94
0
122
37
18
10
34
1.84
91372602--91372627
13
2.0
13
100
0
52
53
0
23
23
1.46
91373651--91373686
17
2.1
17
100
0
72
19
27
22
30
1.98
91388103--91388169
6
10.8
6
73
17
57
76
4
1
17
1.04
91393547--91394749
391
3.0
392
93
5
1934
39
12
19
28
1.89
91394002--91394846
422
2.0
422
99
0
1672
38
12
19
29
1.89
91412552--91412593
10
3.9
11
79
14
52
2
30
0
66
1.04
91412558--91412625
22
3.1
22
76
16
77
4
25
2
67
1.23
91424476--91424653
52
3.5
52
88
6
224
26
30
15
28
1.96
91424476--91424653
51
3.5
49
85
6
212
26
30
15
28
1.96
91430888--91430954
34
1.9
35
87
3
100
25
25
17
31
1.97
91445649--91445727
38
2.1
37
82
13
92
46
0
2
50
1.14
91451153--91451188
9
4.0
9
89
10
56
55
0
0
44
0.99
91454374--91454750
44
8.6
43
67
10
129
26
24
19
29
1.98
91454436--91454798
132
2.8
131
87
0
512
27
22
20
30
1.98
91459312--91459448
55
2.5
55
83
4
161
29
29
25
16
1.96
91475718--91475754
5
7.4
5
88
11
58
81
0
2
16
0.81
91480154--91480190
5
7.4
5
88
11
58
81
0
2
16
0.81
91481016--91481046
16
1.9
16
100
0
62
19
19
16
45
1.86
91481925--91481968
11
4.3
10
82
11
54
68
2
0
29
1.02
91481922--91481967
19
2.4
19
79
17
58
67
2
0
30
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91481925--91481970
20
2.3
20
88
7
67
65
2
0
32
1.05
91481925--91482023
9
10.3
9
71
13
65
62
6
4
27
1.37
91483471--91483500
14
2.1
14
100
0
60
43
40
10
6
1.64
91498465--91498639
46
3.8
45
80
8
158
24
30
18
26
1.98
91505657--91505785
50
2.5
51
91
5
208
34
16
23
25
1.95
91505761--91505878
31
3.8
31
89
4
175
27
20
27
24
1.99
91510890--91511763
437
2.0
437
97
0
1658
40
19
12
28
1.87
91512001--91512164
46
3.5
46
81
11
167
24
31
18
25
1.97
91519134--91519168
14
2.4
14
95
4
61
8
25
0
65
1.21
91519114--91519158
19
2.5
18
83
16
58
6
26
0
66
1.16
91521848--91521879
16
1.9
17
93
6
57
53
0
0
46
1.00
91521955--91521989
18
2.0
17
88
5
52
45
0
0
54
0.99
91521943--91522217
147
1.9
149
96
1
509
47
2
3
46
1.33
91522102--91522136
18
2.0
17
88
5
52
45
0
0
54
0.99
91522298--91522392
45
2.1
44
88
5
138
33
27
4
34
1.76
91522373--91522424
16
3.2
16
94
0
86
34
36
0
28
1.58
91530369--91530541
93
1.9
93
88
0
265
27
30
21
20
1.98
91535149--91535194
20
2.3
21
77
11
51
52
2
2
43
1.25
91546251--91546362
56
2.0
56
89
5
174
27
11
21
39
1.88
91550830--91550941
56
2.0
56
89
5
174
27
11
21
39
1.88
91556271--91556366
47
2.0
47
95
0
174
39
11
11
37
1.78
91559189--91559222
3
11.3
3
87
12
52
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91590965--91591073
40
2.7
40
94
0
191
24
26
23
24
2.00
91596340--91596382
23
1.9
22
85
4
59
39
9
25
25
1.85
91603401--91604008
303
2.0
303
99
0
1189
28
19
12
39
1.87
91623223--91623506
43
6.6
43
92
0
460
30
31
24
12
1.92
91623499--91623602
38
2.7
38
84
0
127
29
25
20
25
1.99
91628407--91628690
43
6.6
43
88
0
433
32
32
23
11
1.91
91628683--91628806
38
3.2
38
86
2
149
27
25
22
24
2.00
91635091--91635235
54
2.7
54
79
0
146
23
28
22
25
1.99
91636127--91636304
40
4.4
40
84
1
230
33
16
28
21
1.95
91636157--91636218
20
3.1
20
63
9
54
37
17
25
19
1.94
91636147--91636300
81
1.9
80
89
1
236
35
16
28
20
1.94
91638711--91638882
93
1.8
93
96
0
317
27
29
21
20
1.98
91638704--91638879
46
3.8
46
79
12
216
28
29
21
20
1.98
91646132--91646186
21
2.6
21
82
0
74
27
7
34
30
1.84
91647374--91647456
31
2.6
31
84
3
103
60
20
4
14
1.52
91648131--91648159
14
2.1
14
93
6
51
58
6
0
34
1.25
91648340--91648368
14
2.1
14
93
6
51
58
6
0
34
1.25
91648067--91648486
209
2.0
209
99
0
831
43
13
10
33
1.77
91652358--91652611
9
28.0
9
68
15
114
35
3
15
45
1.62
91652395--91652654
18
14.5
18
68
17
121
36
3
14
45
1.61
91652397--91652654
74
3.3
74
89
5
363
36
3
14
45
1.61
91652440--91652619
38
4.9
36
69
21
122
36
3
14
46
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91652800--91653059
106
2.5
105
93
1
434
55
3
5
35
1.40
91653357--91654329
488
2.0
485
96
0
1775
41
19
7
31
1.78
91654401--91654434
16
2.1
16
94
0
59
50
23
0
26
1.50
91656906--91657015
44
2.5
44
85
5
116
37
2
40
19
1.66
91657856--91657887
15
2.1
15
94
0
55
28
6
0
65
1.16
91657913--91657959
7
7.0
7
76
9
53
44
38
0
17
1.48
91657913--91657980
34
2.0
33
83
8
84
42
38
0
19
1.51
91658571--91658614
21
2.0
21
82
8
52
56
18
0
25
1.41
91658635--91659074
154
2.8
153
82
5
494
26
25
17
30
1.97
91660553--91660586
14
2.4
14
90
0
50
58
8
5
26
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290