genome.fa.s7.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  195  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66967423--66967474	25	2.1	25	100	0	104	19	40	7	32	1.80
66968194--66968404	94	2.3	91	81	10	225	25	27	19	27	1.99
66968144--66968407	46	5.6	46	75	12	193	24	27	19	28	1.98
66968232--66968406	46	3.8	46	81	4	199	24	26	20	28	1.99
66971852--66972109	130	2.0	129	93	2	435	37	20	11	30	1.88
66973641--66973711	36	2.0	36	94	2	126	29	7	19	43	1.77
66981465--66982395	46	20.2	46	97	1	1724	19	28	23	28	1.98
67001816--67002036	46	4.7	46	74	9	169	22	28	19	29	1.98
67003283--67003395	49	2.3	50	87	1	165	24	19	23	31	1.98
67031512--67031567	17	3.4	17	67	18	55	69	1	21	7	1.22
67031544--67031588	22	2.0	22	100	0	90	73	0	22	4	1.01
67034384--67034442	10	5.7	10	76	13	57	64	0	6	28	1.19
67034483--67034512	14	2.1	14	93	0	51	70	0	0	30	0.88
67034543--67034582	18	2.2	18	95	0	71	60	2	10	27	1.42
67034919--67034992	12	6.4	11	71	10	58	60	1	5	32	1.27
67036817--67037666	206	4.1	206	93	0	1389	28	22	18	30	1.97
67045782--67045977	55	3.6	53	77	10	182	23	26	16	33	1.96
67047011--67047240	43	5.4	42	80	4	235	33	23	19	23	1.97
67047542--67047581	21	1.9	21	100	0	80	2	55	17	25	1.55
67048140--67048177	19	2.1	19	90	9	62	52	0	5	42	1.24
67049351--67049377	12	2.2	12	100	0	54	14	18	14	51	1.76
67056547--67056804	40	6.5	40	93	2	371	23	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67060735--67060873	37	3.8	37	96	0	233	26	30	17	24	1.97
67060992--67061114	47	2.6	49	79	7	146	26	30	8	34	1.86
67065259--67065355	41	2.4	40	89	3	142	17	21	23	37	1.94
67066379--67066411	11	3.0	11	90	0	57	51	0	21	27	1.48
67070034--67070119	27	3.2	27	86	6	131	33	22	13	30	1.93
67070043--67070121	26	3.0	27	90	3	133	34	17	16	31	1.93
67070731--67070771	19	2.3	19	79	8	50	19	7	14	58	1.59
67080293--67080359	30	2.2	30	97	0	125	20	35	25	17	1.95
67098917--67099051	40	3.4	40	91	0	207	28	27	23	20	1.99
67122642--67122674	16	2.1	16	94	0	57	48	18	3	30	1.63
67126724--67126838	46	2.5	45	84	5	142	26	29	17	26	1.97
67138879--67138908	15	2.0	15	100	0	60	26	13	0	60	1.34
67142063--67142200	40	3.5	40	92	2	224	23	23	26	26	2.00
67142376--67142424	25	2.0	25	88	8	73	30	12	28	28	1.93
67144267--67144489	40	5.6	40	85	3	227	24	20	27	26	1.99
67150280--67150375	50	1.9	50	95	0	174	14	31	9	44	1.77
67150353--67150399	24	2.0	24	100	0	94	14	25	8	51	1.71
67150303--67150445	74	1.9	74	95	0	259	14	31	8	45	1.75
67159692--67159723	16	2.0	16	100	0	64	12	18	25	43	1.85
67161765--67161830	24	2.7	24	83	4	69	28	16	16	37	1.91
67161774--67161830	24	2.3	26	84	6	73	29	15	15	38	1.89
67166946--67167499	27	20.7	27	82	4	550	37	20	10	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67167451--67167512	27	2.3	27	88	0	88	37	16	17	29	1.92
67181327--67181386	23	2.6	23	91	0	102	13	30	33	23	1.93
67187408--67187639	40	5.8	40	87	3	306	26	22	27	24	2.00
67189740--67189877	64	2.2	64	90	0	222	26	28	13	31	1.93
67193240--67193342	28	3.7	28	84	0	134	25	13	33	28	1.94
67196728--67196846	6	19.3	6	69	17	57	48	12	18	20	1.80
67196749--67196846	25	3.7	25	74	15	97	47	12	19	20	1.81
67196751--67196817	31	2.2	31	88	0	98	49	13	17	19	1.80
67196964--67197043	27	3.0	26	83	5	97	37	22	23	16	1.93
67196955--67197037	27	3.1	26	81	5	94	33	21	26	18	1.96
67197167--67197218	27	1.9	27	84	7	70	36	17	23	23	1.95
67197708--67197804	27	3.6	26	78	8	88	24	16	19	39	1.92
67197841--67197944	27	3.9	27	77	7	88	32	9	21	36	1.86
67197854--67198021	27	6.2	27	82	6	155	30	8	20	40	1.82
67197923--67198037	27	4.3	27	89	2	117	26	6	23	42	1.79
67198033--67198090	27	2.2	25	79	8	71	36	8	15	39	1.78
67198039--67198089	27	1.9	26	88	4	75	39	5	15	39	1.72
67209245--67209338	32	2.8	32	75	13	84	27	25	20	26	1.99
67209611--67209663	26	2.0	26	82	7	63	26	15	20	37	1.92
67215599--67215692	47	2.0	47	97	0	179	22	27	18	31	1.97
67226547--67226767	40	5.6	40	83	4	270	27	27	22	23	1.99
67234132--67234195	28	2.3	27	91	2	101	37	28	7	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67234298--67234413	27	4.3	26	89	7	160	17	22	23	37	1.94
67254504--67254659	42	3.7	42	81	5	188	30	14	23	30	1.95
67263654--67263838	79	2.3	82	84	7	238	25	27	22	24	2.00
67263635--67263838	40	5.1	40	82	8	238	25	27	22	25	2.00
67266462--67266593	45	3.0	43	76	8	113	28	28	16	25	1.97
67266499--67266590	45	2.0	45	85	4	123	30	27	17	25	1.97
67269381--67269411	15	2.1	15	93	0	53	54	25	0	19	1.44
67283650--67283697	24	2.0	24	91	0	78	35	12	12	39	1.81
67300794--67300933	43	3.3	43	81	7	160	32	16	20	31	1.94
67307875--67307942	27	2.5	27	79	9	84	35	19	14	30	1.92
67310386--67310559	86	2.0	84	90	4	269	34	32	13	20	1.91
67315422--67315682	46	5.6	46	73	11	176	29	19	28	22	1.98
67320990--67321051	27	2.3	27	83	5	72	32	14	22	30	1.94
67326578--67326616	15	2.7	14	80	7	51	76	0	5	17	0.96
67339454--67339503	22	2.3	22	89	0	82	56	18	4	22	1.58
67341905--67342094	96	2.0	96	87	2	274	41	15	30	12	1.84
67349507--67349539	4	8.2	4	100	0	66	24	0	0	75	0.80
67361268--67362039	384	2.0	384	98	0	1490	24	30	19	26	1.98
67366786--67366859	38	1.9	38	88	0	112	33	25	21	18	1.96
67368147--67368270	23	5.4	23	79	9	128	35	17	20	26	1.95
67368134--67368296	46	3.5	45	77	17	145	35	17	20	26	1.94
67370155--67370341	28	6.7	28	84	4	252	25	36	14	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67370155--67370341	84	2.2	84	100	0	374	25	36	14	23	1.93
67374906--67375009	28	3.7	28	88	5	156	26	35	13	24	1.92
67379517--67379711	27	7.2	27	82	2	187	27	17	17	37	1.93
67379517--67379711	81	2.4	81	81	4	232	27	17	17	37	1.93
67379516--67379736	27	8.2	27	79	3	131	27	16	19	36	1.93
67379517--67379736	54	4.1	54	82	2	183	27	16	18	36	1.93
67379696--67379819	53	2.3	54	87	4	171	25	7	24	42	1.80
67379696--67379819	27	4.6	27	83	4	153	25	7	24	42	1.80
67382506--67382674	27	6.3	27	84	1	196	24	18	19	37	1.94
67382659--67382756	27	3.6	27	86	5	135	25	8	22	43	1.80
67382521--67382701	54	3.4	54	79	6	188	25	17	19	37	1.93
67382506--67382701	81	2.4	81	82	1	241	25	17	19	37	1.94
67384472--67384629	27	5.9	27	84	1	192	24	20	18	36	1.95
67384989--67385026	19	2.0	20	85	15	53	36	0	23	39	1.55
67394403--67394451	23	2.1	23	96	0	89	26	24	14	34	1.94
67401974--67402183	27	7.8	27	93	0	312	29	23	7	39	1.82
67401974--67402183	81	2.6	81	93	0	348	29	23	7	39	1.82
67401928--67402194	81	3.3	81	85	1	302	31	22	7	38	1.83
67402162--67402369	27	7.7	27	83	3	195	38	20	10	31	1.85
67402162--67402344	81	2.3	81	83	1	233	38	20	9	30	1.85
67402372--67402723	27	13.0	27	92	0	551	34	19	21	24	1.96
67402926--67402995	25	2.8	25	88	0	95	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67402951--67403022	25	3.0	24	80	13	76	30	22	20	26	1.98
67404896--67405099	38	5.3	38	83	3	230	31	26	21	20	1.98
67419017--67419051	18	1.9	18	88	0	52	54	0	2	42	1.15
67422194--67422247	28	1.9	28	81	7	65	46	14	9	29	1.76
67424072--67424237	87	1.9	86	95	1	296	34	11	12	41	1.78
67428324--67428454	65	2.0	65	96	0	244	29	10	16	43	1.82
67431546--67431593	23	2.1	23	84	0	60	45	8	27	18	1.78
67434042--67434166	27	4.6	27	84	0	115	42	21	9	26	1.83
67434031--67434153	54	2.3	54	82	2	131	43	21	12	22	1.86
67437210--67437262	18	2.9	18	85	0	70	47	13	20	18	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290