genome.fa.s7.2.7.7.80.10.50.1000.257.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  257  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88519457--88519772	160	2.0	160	99	0	623	18	31	13	36	1.90
88521816--88521856	22	1.9	21	85	5	55	14	46	12	26	1.80
88522762--88522819	11	4.9	11	74	14	53	79	1	15	3	0.95
88523454--88523587	51	2.6	51	79	0	169	40	13	6	39	1.71
88528508--88528572	28	2.3	28	86	0	94	38	9	23	29	1.85
88528644--88528867	39	5.7	39	95	1	378	17	22	29	29	1.97
88538913--88538991	28	2.8	28	86	0	104	34	11	25	29	1.91
88540446--88540502	26	2.2	26	100	0	114	54	10	8	26	1.63
88547095--88547170	40	1.9	40	83	0	98	32	15	22	28	1.95
88569948--88570430	240	2.0	240	100	0	966	35	11	15	37	1.84
88579422--88579452	16	1.9	16	93	0	53	35	22	0	41	1.54
88579419--88579458	20	2.0	20	85	0	53	37	22	0	40	1.54
88579644--88579897	53	4.8	52	76	11	164	21	26	18	34	1.96
88579689--88579897	53	3.9	54	75	10	185	22	26	18	33	1.97
88579691--88579887	108	1.8	109	83	5	265	22	26	18	32	1.97
88585790--88585820	16	1.9	16	93	0	53	35	22	0	41	1.54
88586012--88586266	55	4.8	54	81	7	265	21	25	17	35	1.95
88586059--88586259	108	1.8	110	89	4	318	22	25	17	33	1.96
88592327--88592357	16	1.9	16	93	0	53	77	3	19	0	0.90
88607385--88607648	93	2.8	92	87	1	339	29	28	18	23	1.98
88607379--88607646	46	5.8	45	69	11	177	29	27	19	23	1.98
88607429--88607598	47	3.6	47	70	7	157	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88612826--88613085	46	5.6	46	69	15	176	31	28	18	21	1.97
88612879--88613042	47	3.5	47	75	11	183	29	27	19	23	1.98
88612835--88613085	93	2.7	93	90	1	378	30	28	18	22	1.97
88614646--88614670	13	1.9	13	100	0	50	48	8	32	12	1.69
88616356--88616410	28	1.9	29	85	10	78	20	38	21	20	1.94
88619942--88620097	43	3.7	43	75	9	122	26	15	26	30	1.96
88626019--88626208	82	2.3	82	86	1	245	28	24	21	25	1.99
88629081--88629133	27	2.0	25	85	7	70	58	9	11	20	1.60
88630239--88630270	11	2.8	12	81	18	50	40	18	15	25	1.90
88636058--88636155	49	2.0	49	97	0	187	47	8	18	25	1.76
88639728--88639944	46	4.7	44	77	15	190	26	17	30	25	1.97
88642247--88642284	20	1.9	20	89	10	60	42	10	5	42	1.62
88643074--88643112	8	4.8	8	83	3	51	2	15	0	82	0.79
88643282--88643586	146	2.1	146	88	4	445	40	4	10	45	1.58
88648617--88648652	13	2.7	14	87	12	58	0	22	0	77	0.76
88649240--88649325	45	1.9	45	95	0	154	25	15	24	34	1.94
88652162--88652301	49	2.8	49	82	6	167	27	20	23	28	1.99
88659663--88659696	12	2.8	12	83	16	52	29	32	0	38	1.58
88663682--88663777	29	3.3	29	83	1	122	30	30	14	25	1.95
88667349--88667499	42	3.6	42	79	6	153	28	20	24	26	1.99
88670698--88670815	29	4.1	29	92	1	184	28	30	15	25	1.96
88678897--88678954	30	1.9	30	89	0	89	37	8	25	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88691519--88691553	18	1.9	18	100	0	70	28	5	40	25	1.78
88694511--88694560	23	2.1	23	85	10	66	10	4	10	76	1.15
88697858--88698035	27	6.6	27	80	6	171	30	27	14	27	1.95
88698517--88698543	12	2.2	12	100	0	54	40	0	7	51	1.30
88720503--88720572	27	2.6	27	95	2	113	31	28	12	27	1.93
88720503--88720600	28	3.5	28	90	2	135	31	28	13	26	1.94
88730183--88730284	52	2.0	48	87	9	150	39	15	17	26	1.90
88737691--88737784	34	2.8	34	82	6	109	27	25	23	23	2.00
88741423--88741447	13	1.9	13	100	0	50	20	40	24	16	1.91
88763886--88763962	29	2.5	31	79	8	95	19	22	12	45	1.84
88763856--88764138	119	2.4	119	86	4	372	23	22	12	40	1.89
88764070--88764164	31	3.1	31	83	3	129	26	18	11	43	1.84
88763946--88764167	30	7.4	30	77	8	191	24	23	12	39	1.89
88765948--88766000	22	2.4	22	87	0	70	9	5	58	26	1.52
88765948--88766000	11	4.8	11	75	9	54	9	5	58	26	1.52
88772244--88772297	24	2.2	24	87	6	74	29	25	20	24	1.99
88773615--88773673	29	2.0	29	90	0	91	35	30	10	23	1.88
88778003--88778050	18	2.4	19	80	16	53	50	4	2	43	1.33
88781288--88781555	46	5.8	46	72	11	197	22	20	26	30	1.98
88781285--88781548	93	2.8	93	86	0	375	23	20	26	29	1.99
88787503--88787853	47	7.5	47	72	16	309	24	20	28	27	1.99
88787449--88787900	93	4.9	93	95	0	751	23	20	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88789353--88789570	40	5.5	40	85	2	253	26	28	22	22	1.99
88794402--88794468	34	2.0	34	85	5	91	25	25	22	26	2.00
88802117--88802164	24	2.0	24	100	0	96	37	20	0	41	1.53
88803722--88803842	44	2.8	42	76	15	122	26	16	25	31	1.96
88803722--88803862	44	3.3	42	74	17	121	25	17	26	30	1.97
88812330--88812380	22	2.2	24	82	6	61	29	3	27	39	1.74
88815751--88815932	27	6.7	27	84	5	215	36	18	19	25	1.95
88815751--88815949	54	3.7	53	84	6	249	35	18	20	26	1.95
88815751--88815936	81	2.3	80	87	1	273	35	18	19	26	1.95
88816583--88816634	27	2.0	26	84	3	68	17	26	21	34	1.95
88817726--88817778	26	2.0	26	96	0	97	47	20	22	9	1.79
88821713--88821764	27	2.0	26	84	3	68	17	26	21	34	1.95
88827100--88827184	31	2.8	31	87	1	136	23	25	17	32	1.97
88827402--88827471	25	2.8	25	91	0	104	24	22	25	27	2.00
88827519--88827577	11	5.7	11	76	15	72	32	18	11	37	1.87
88827519--88827575	20	2.8	20	100	0	114	33	19	10	36	1.86
88828407--88828514	52	2.1	52	96	0	198	41	14	20	23	1.89
88829668--88829692	3	8.3	3	100	0	50	64	0	0	36	0.94
88831954--88832023	25	2.8	25	95	0	122	25	20	25	28	1.99
88834667--88834745	37	2.1	37	90	0	122	25	31	18	24	1.98
88834864--88835841	49	20.1	49	97	1	1781	29	30	8	30	1.87
88839456--88839483	3	9.3	3	100	0	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88842564--88842615	22	2.2	25	80	13	65	57	19	0	23	1.40
88842885--88843041	43	3.7	43	78	9	142	31	25	17	25	1.97
88845774--88845984	40	5.3	40	81	3	239	27	26	21	24	2.00
88849939--88849977	19	2.1	19	95	0	69	28	10	12	48	1.74
88850143--88850239	50	1.9	50	100	0	194	27	11	26	34	1.91
88866997--88867220	49	4.5	49	79	3	232	29	26	18	25	1.98
88866996--88867227	100	2.3	99	81	5	272	29	27	18	25	1.98
88874455--88874594	43	3.3	41	77	8	129	33	25	15	25	1.95
88881661--88881703	17	2.5	17	77	7	52	30	2	0	67	1.03
88885468--88885783	48	6.6	49	86	4	394	28	28	17	25	1.97
88885468--88885740	144	1.9	144	90	1	440	28	28	17	25	1.98
88887000--88887315	48	6.6	48	79	6	329	27	18	29	24	1.98
88887000--88887315	143	2.2	144	85	4	415	27	18	29	24	1.98
88886987--88887315	96	3.4	94	84	3	381	26	18	29	25	1.98
88890882--88890957	38	2.0	38	97	0	143	30	14	23	31	1.94
88892146--88892290	40	3.6	40	85	4	193	25	24	26	23	2.00
88898716--88898756	12	3.2	13	86	13	59	75	7	4	12	1.16
88898723--88898767	12	3.8	12	85	11	58	80	4	8	6	1.03
88898748--88898780	12	2.5	14	90	9	52	81	3	12	3	0.91
88898701--88898767	24	2.8	24	77	6	73	76	4	11	7	1.15
88898735--88898780	13	3.6	13	80	14	51	78	6	10	4	1.08
88899714--88899784	37	1.9	37	86	11	101	76	2	18	2	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88899724--88899773	6	8.2	6	83	14	50	76	2	20	2	0.99
88901838--88901944	52	2.1	52	96	0	196	28	23	29	18	1.98
88903429--88903638	40	5.3	40	91	0	305	23	21	28	26	1.99
88903376--88903638	120	2.2	120	82	3	316	24	20	27	26	1.99
88911380--88911589	40	5.3	39	89	4	242	25	21	27	25	1.99
88911327--88911589	120	2.2	120	82	4	309	25	21	27	25	1.99
88911328--88911624	80	3.7	80	81	6	230	26	21	27	24	1.99
88913821--88913864	14	3.5	13	82	11	56	75	0	2	22	0.92
88917148--88917319	93	1.8	93	87	0	254	28	27	21	22	1.99
88917141--88917316	46	3.8	46	75	10	160	29	27	21	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290