genome.fa.s7.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  215  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74299176--74299428	38	5.9	39	70	22	136	31	24	15	29	1.95
74299225--74299394	47	3.6	47	89	0	232	31	22	15	30	1.95
74302705--74303749	46	22.7	46	97	0	1894	43	14	23	18	1.87
74305900--74305981	26	3.2	26	98	0	155	30	6	26	36	1.81
74318224--74318258	10	3.5	10	88	0	52	37	22	25	14	1.92
74318221--74318268	20	2.4	20	75	0	60	31	18	29	20	1.97
74330771--74330830	27	2.2	27	85	5	77	26	15	23	35	1.94
74330936--74330968	17	1.9	17	93	0	57	18	42	27	12	1.85
74332797--74332902	44	2.5	42	86	6	133	32	28	16	22	1.96
74340083--74340475	40	9.8	40	92	0	624	22	28	19	29	1.98
74340083--74340475	80	4.9	80	97	0	723	22	28	19	29	1.98
74345634--74345742	27	4.0	27	84	2	94	42	16	12	28	1.85
74345610--74345739	54	2.4	54	81	2	136	43	16	14	25	1.86
74346469--74346546	39	2.0	39	97	0	147	29	33	17	19	1.95
74353540--74353670	48	2.7	48	82	6	142	35	25	16	22	1.95
74356402--74356442	18	2.3	18	91	4	66	43	0	14	41	1.45
74360483--74360610	48	2.7	48	85	6	154	34	25	19	20	1.96
74367716--74367791	40	1.9	40	81	5	91	71	6	2	19	1.21
74374113--74374147	16	2.2	16	89	0	52	45	11	17	25	1.81
74375098--74375155	30	1.9	30	96	0	107	37	10	24	27	1.88
74376753--74376881	42	3.0	42	79	2	150	31	13	25	29	1.94
74378410--74378645	118	2.0	118	99	0	463	29	29	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74378698--74378875	27	6.6	27	84	3	205	29	28	15	26	1.96
74378719--74378874	82	1.9	81	88	3	233	29	28	15	26	1.96
74383723--74383847	46	2.7	46	90	2	189	22	20	25	32	1.98
74386262--74386325	31	2.1	31	93	0	110	23	23	15	37	1.93
74386517--74386611	23	4.0	24	86	9	133	27	22	21	29	1.99
74386660--74386726	20	3.3	20	93	0	116	32	20	11	34	1.90
74386660--74386715	11	5.5	11	71	16	57	32	19	12	35	1.89
74386763--74386810	25	1.9	25	86	0	69	25	16	25	33	1.96
74390511--74391326	408	2.0	408	99	0	1605	29	24	16	29	1.96
74414453--74414529	38	2.0	38	100	0	154	42	12	10	33	1.77
74419584--74419728	40	3.6	40	85	4	193	25	24	26	23	2.00
74427533--74427717	79	2.3	81	84	7	236	24	22	27	25	2.00
74427534--74427717	40	4.6	40	83	9	216	24	22	27	25	2.00
74427586--74427750	79	2.1	79	84	6	210	26	21	27	25	1.99
74442314--74442343	13	2.3	13	100	0	60	16	36	0	46	1.47
74444208--74444304	40	2.4	40	89	3	142	19	21	27	30	1.98
74452842--74452885	22	1.9	24	86	9	65	40	0	25	34	1.56
74453458--74453504	20	2.3	20	96	0	85	31	19	6	42	1.76
74456424--74456571	43	3.5	42	81	2	170	29	14	24	32	1.94
74457893--74458085	27	7.1	27	83	1	235	35	18	20	25	1.95
74457893--74458085	54	3.6	54	88	1	262	35	18	20	25	1.95
74458448--74458488	20	2.0	20	90	0	64	17	17	26	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74458514--74458569	25	2.2	25	100	0	112	19	23	19	37	1.94
74458725--74458824	6	16.3	6	74	15	89	18	18	15	49	1.81
74458728--74458798	25	2.8	25	89	0	115	16	19	16	46	1.84
74460802--74461021	27	8.1	27	89	0	314	36	18	19	25	1.94
74461120--74461407	144	2.0	144	99	0	567	24	11	28	35	1.91
74461760--74461884	6	20.3	6	70	16	87	20	19	12	48	1.81
74461763--74461827	25	2.6	25	87	0	94	20	21	13	44	1.86
74461760--74461863	31	3.4	31	72	15	97	20	20	12	47	1.82
74461782--74461875	37	2.5	37	87	0	125	20	20	11	47	1.80
74463234--74464118	442	2.0	442	100	0	1770	24	13	30	31	1.93
74465344--74465405	26	2.3	27	86	10	92	37	27	8	27	1.85
74465509--74465623	27	4.3	27	84	6	144	20	23	20	36	1.95
74470508--74470568	24	2.5	24	86	5	79	21	16	27	34	1.95
74476599--74476665	24	2.8	24	79	6	64	43	20	17	17	1.88
74481991--74482077	27	3.2	27	80	9	106	19	24	22	33	1.97
74482844--74482872	12	2.4	12	100	0	58	10	24	51	13	1.72
74488814--74488899	27	3.2	26	88	3	109	19	22	20	37	1.95
74488814--74488881	27	2.5	27	90	4	111	16	23	23	36	1.94
74490094--74490136	21	2.0	21	95	0	77	46	16	4	32	1.67
74505175--74505267	42	2.2	43	78	5	100	30	21	20	27	1.98
74510163--74510204	20	2.2	19	87	12	59	16	21	4	57	1.58
74512867--74512926	27	2.2	27	82	5	68	28	8	21	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74514976--74515035	27	2.3	26	82	2	66	36	20	21	21	1.95
74515256--74515314	27	2.2	27	87	6	84	37	8	23	30	1.85
74515266--74515381	27	4.3	27	73	14	87	31	8	19	39	1.82
74515306--74515460	27	5.8	27	78	8	129	29	10	21	39	1.86
74515276--74515460	54	3.5	53	77	6	167	31	9	21	37	1.86
74525959--74526056	51	1.9	51	91	0	160	32	16	15	35	1.90
74527115--74527156	22	1.9	22	85	0	57	40	0	2	57	1.12
74545505--74545549	9	5.2	9	80	20	60	55	17	0	26	1.42
74545511--74545542	15	2.1	16	94	5	57	62	12	0	25	1.30
74550179--74550212	17	2.0	17	88	0	50	41	17	0	41	1.50
74563780--74564134	179	2.0	179	100	0	710	41	17	9	31	1.82
74570806--74570843	20	1.9	20	89	10	60	63	2	5	28	1.30
74571063--74571102	16	2.5	16	95	0	71	55	10	12	22	1.67
74576431--74576488	22	2.6	22	68	10	55	43	18	22	15	1.88
74576473--74576543	22	3.2	21	82	7	79	45	22	22	9	1.82
74576486--74576555	22	3.2	22	85	0	77	44	22	22	10	1.83
74577376--74577414	18	2.2	18	95	0	69	46	0	10	43	1.37
74578569--74578601	17	2.0	17	94	5	59	15	0	12	72	1.12
74586548--74586595	24	2.0	24	83	0	60	22	0	29	47	1.51
74587397--74587460	31	2.1	31	90	0	101	25	23	15	35	1.94
74587675--74587770	23	4.1	23	94	1	156	30	19	20	29	1.97
74587821--74587887	20	3.3	20	93	0	116	32	20	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74587821--74587876	11	5.5	11	71	16	57	32	19	12	35	1.89
74596731--74596793	20	3.1	20	69	13	65	33	9	6	50	1.60
74596731--74596793	21	3.0	21	72	4	74	33	9	6	50	1.60
74602237--74602278	21	2.0	21	86	9	59	16	2	23	57	1.51
74602628--74602670	20	2.2	20	84	8	54	39	16	2	41	1.61
74605709--74605787	28	2.8	28	86	0	104	34	11	25	29	1.91
74614979--74615006	9	3.1	9	100	0	56	78	0	0	21	0.75
74622693--74622809	43	2.8	40	75	14	101	23	15	27	34	1.94
74628825--74628925	44	2.3	43	86	8	134	22	17	25	33	1.96
74631126--74631298	46	3.7	46	79	10	208	21	20	27	29	1.98
74631123--74631293	93	1.8	93	93	0	297	21	21	28	28	1.98
74631523--74631560	19	2.0	20	85	15	53	36	0	23	39	1.55
74640485--74640568	28	3.1	26	76	10	87	39	22	21	16	1.92
74644352--74644378	8	3.4	8	100	0	54	77	0	11	11	0.99
74645746--74645788	22	2.0	22	100	0	86	32	0	13	53	1.41
74650413--74650449	18	2.1	18	94	0	65	40	5	16	37	1.71
74650766--74650840	24	3.3	23	72	11	64	26	21	14	37	1.92
74653181--74653217	9	4.1	9	86	13	58	45	10	10	32	1.74
74656735--74656910	46	3.8	45	81	10	212	21	21	29	28	1.98
74656731--74656902	93	1.8	93	94	0	308	20	21	30	27	1.98
74659189--74659262	26	2.9	26	81	2	105	32	22	9	35	1.87
74659405--74659432	6	4.7	6	100	0	56	17	28	0	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74678263--74678399	37	3.7	36	92	1	202	26	18	29	24	1.98
74678627--74678896	134	2.0	134	100	0	540	35	10	19	35	1.86
74680132--74680204	26	2.8	26	91	0	119	24	23	26	26	2.00
74680254--74680310	20	2.8	20	89	0	87	36	17	10	35	1.84
74680254--74680309	11	5.5	11	75	16	57	35	17	10	35	1.85
74683105--74683282	27	6.6	27	83	3	205	26	15	28	29	1.96
74683106--74683261	82	1.9	81	88	3	233	26	15	28	29	1.96
74683102--74683282	82	2.2	81	83	2	229	27	15	27	29	1.96
74688830--74688861	16	2.0	16	100	0	64	56	6	12	25	1.59
74694519--74694572	14	3.7	14	76	16	56	44	1	0	53	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290