genome.fa.s7.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  200  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68865052--68865170	23	5.1	23	94	1	202	31	20	20	28	1.97
68865221--68865285	20	3.2	20	93	0	112	32	21	12	33	1.90
68865221--68865274	11	5.3	11	70	17	53	31	20	12	35	1.90
68865322--68865369	25	1.9	25	91	0	78	25	14	25	35	1.94
68867762--68867805	19	2.4	18	85	7	54	40	9	0	50	1.34
68872275--68872329	27	2.0	27	100	0	110	47	14	10	27	1.78
68877708--68878895	40	29.7	40	98	0	2295	30	19	27	22	1.98
68882724--68882789	34	1.9	34	90	0	105	27	28	3	40	1.71
68886474--68886673	81	2.5	81	79	3	224	32	15	23	29	1.95
68894097--68894151	15	3.7	14	83	11	65	14	14	14	56	1.68
68903351--68903384	17	1.9	18	88	5	52	38	5	5	50	1.51
68909067--68909223	43	3.7	43	84	3	183	33	26	13	26	1.93
68909041--68909237	86	2.3	86	80	5	227	32	25	13	28	1.93
68915734--68915830	20	4.8	20	71	9	72	40	20	26	12	1.88
68915734--68915809	20	3.8	20	75	8	73	40	21	26	11	1.87
68915810--68915851	21	2.0	21	85	0	57	38	16	23	21	1.93
68920320--68920354	18	1.9	18	88	11	54	31	11	25	31	1.91
68920339--68920388	18	2.7	19	75	9	59	38	18	20	24	1.93
68920801--68920987	27	7.0	27	84	7	186	24	17	18	39	1.92
68920801--68920987	54	3.5	54	83	5	218	24	17	18	39	1.92
68920781--68920993	27	7.9	27	82	9	161	25	16	17	40	1.90
68920801--68921061	54	4.9	54	79	6	165	27	16	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68920801--68921005	107	1.9	107	80	4	234	25	16	18	39	1.91
68920973--68921072	27	3.7	27	86	0	128	34	16	13	37	1.87
68922485--68922527	12	3.6	11	81	12	50	16	48	0	34	1.46
68944787--68944823	18	2.1	19	85	10	51	35	8	2	54	1.44
68947157--68947190	17	1.9	17	88	5	50	55	0	0	44	0.99
68947056--68947634	321	1.8	318	91	2	955	45	5	3	46	1.42
68948771--68948810	20	2.0	20	85	9	55	42	5	2	50	1.37
68949158--68949190	17	2.0	16	94	5	57	30	0	0	69	0.88
68956806--68956844	17	2.3	17	86	0	60	5	12	0	82	0.83
68956872--68956934	33	1.9	33	86	0	90	53	1	3	41	1.26
68958500--68958572	36	2.0	36	100	0	146	38	13	16	31	1.88
68959189--68959305	45	2.6	45	81	9	123	29	20	27	23	1.99
68967672--68967721	25	2.0	25	88	7	75	38	10	10	42	1.72
68967893--68967968	37	2.1	36	83	11	93	53	2	1	42	1.23
68975002--68975070	25	2.8	25	80	4	77	23	28	15	31	1.95
68976047--68976360	162	1.9	162	86	1	441	23	24	26	24	2.00
68983751--68983937	40	4.7	40	86	6	220	25	22	27	25	2.00
68983753--68983970	40	5.5	39	82	7	167	26	22	27	24	2.00
68983805--68983970	80	2.1	79	83	5	201	26	21	27	24	1.99
68985733--68985758	5	5.2	5	100	0	52	80	0	0	19	0.71
68986150--68986254	50	2.1	49	82	1	120	21	25	18	34	1.96
68986507--68986606	32	3.2	32	63	27	77	31	8	20	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68986503--68986628	63	2.0	63	98	0	243	32	7	19	39	1.81
68991271--68991327	20	2.8	20	89	0	78	24	28	0	47	1.52
68991285--68991317	15	2.1	16	88	5	50	21	27	0	51	1.48
68997848--68997916	20	3.5	20	71	26	67	47	7	1	43	1.39
69000506--69000564	21	2.8	21	86	0	82	28	5	32	33	1.79
69000668--69000710	17	2.4	18	81	14	54	60	2	0	37	1.10
69007617--69007675	17	3.6	16	82	13	75	69	0	1	28	0.98
69007628--69007675	15	3.1	15	84	6	60	70	0	2	27	0.98
69007797--69007946	80	1.9	80	100	0	300	46	5	10	38	1.60
69010431--69010629	84	2.4	83	91	4	319	36	10	9	44	1.71
69010431--69010669	83	2.9	81	83	9	284	33	10	9	46	1.72
69011781--69012766	493	2.0	493	95	0	1767	34	10	17	37	1.84
69012756--69012781	13	2.0	13	100	0	52	15	15	38	30	1.88
69022642--69022724	42	2.0	40	93	4	139	28	0	36	32	1.58
69032719--69032756	20	1.9	20	89	10	60	31	0	13	55	1.38
69033660--69033705	22	2.1	22	100	0	92	56	4	8	30	1.49
69036879--69036923	16	2.8	16	89	0	72	44	17	22	15	1.86
69038901--69038956	26	2.2	26	96	0	103	30	7	25	37	1.82
69044784--69045046	40	6.6	39	86	4	278	25	27	21	25	1.99
69044784--69045046	120	2.2	119	82	4	307	25	27	21	25	1.99
69044978--69045055	40	1.9	41	82	10	97	26	28	20	24	1.99
69052733--69052839	39	2.7	39	88	1	142	26	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69052733--69052915	80	2.3	80	82	6	212	25	27	21	25	1.99
69052731--69052915	40	4.7	40	80	5	187	25	27	21	25	1.99
69052847--69052924	40	1.9	41	82	10	97	26	28	21	23	1.99
69057890--69057997	26	4.2	26	91	0	180	33	7	23	36	1.83
69064122--69064184	30	2.1	30	90	0	99	58	14	1	25	1.45
69064218--69064244	14	1.9	14	100	0	54	51	14	11	22	1.73
69065883--69065996	53	2.1	54	79	10	128	36	2	3	57	1.30
69065918--69066000	18	4.6	19	76	11	93	31	1	3	63	1.19
69065896--69066018	55	2.3	53	81	12	151	34	3	2	60	1.26
69065924--69066036	53	2.1	53	82	12	135	30	3	2	62	1.25
69065894--69066038	60	2.6	53	80	12	134	33	4	2	60	1.28
69066062--69066109	23	2.1	22	84	7	60	31	6	0	62	1.20
69065930--69066111	16	11.1	16	66	20	74	31	4	2	61	1.28
69066734--69066797	31	2.1	31	96	0	119	21	23	15	39	1.92
69067005--69067061	23	2.4	24	91	5	89	24	22	19	33	1.97
69067111--69067177	20	3.3	20	93	0	116	32	20	11	34	1.90
69067111--69067166	11	5.5	11	71	16	57	32	19	12	35	1.89
69067214--69067261	25	1.9	25	82	0	60	25	14	25	35	1.94
69073450--69073632	37	4.9	37	95	0	321	27	29	19	23	1.98
69073841--69074084	47	5.1	47	86	5	335	26	29	11	32	1.92
69073841--69074084	100	2.5	97	90	4	359	26	29	11	32	1.92
69077544--69077654	57	1.9	58	87	1	161	29	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69077579--69077654	29	2.6	31	79	10	88	30	28	15	25	1.96
69077866--69078977	40	27.8	40	96	0	1909	25	28	22	23	1.99
69080533--69081005	47	10.1	47	97	0	847	24	31	13	30	1.94
69085296--69085606	158	2.0	158	87	1	444	25	18	17	38	1.92
69088268--69088302	18	1.9	18	100	0	70	37	5	11	45	1.64
69091254--69091283	6	5.2	6	92	8	53	66	0	0	33	0.92
69109695--69110147	48	9.4	47	77	7	383	25	29	18	26	1.98
69109711--69110147	96	4.5	96	85	6	519	25	29	18	26	1.98
69109755--69110147	144	2.7	144	82	6	465	25	29	18	26	1.98
69111592--69111877	145	2.0	144	94	0	500	31	25	16	27	1.96
69114725--69114826	51	2.0	51	96	0	186	22	22	10	44	1.84
69121102--69121522	48	8.8	48	99	0	815	33	27	6	33	1.82
69128352--69128535	64	2.8	64	79	8	185	23	30	16	28	1.96
69129271--69129331	30	2.0	30	83	0	77	31	22	8	37	1.84
69131536--69131690	77	2.0	77	100	0	310	21	21	16	39	1.92
69135208--69135461	48	5.3	48	79	5	262	24	30	18	25	1.98
69135208--69135461	96	2.6	95	81	4	296	24	30	18	25	1.98
69137289--69137730	88	5.2	88	75	15	208	35	13	11	39	1.81
69137388--69137618	79	2.9	79	84	1	311	32	14	11	41	1.82
69137579--69138095	87	6.0	87	88	2	641	33	11	12	42	1.79
69137973--69138128	84	1.8	85	82	4	199	33	9	8	47	1.68
69145159--69145193	18	1.9	18	88	0	52	40	22	14	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69156168--69156216	25	2.0	25	83	0	62	36	20	10	32	1.86
69156179--69156232	25	2.2	25	86	0	72	42	18	7	31	1.78
69167406--69167527	43	2.9	42	85	2	163	29	15	25	29	1.96
69168231--69168264	15	2.3	15	89	0	50	11	2	41	44	1.56
69168976--69169014	20	2.1	19	90	9	62	25	5	41	28	1.77
69169791--69169848	28	2.1	28	100	0	116	56	13	10	18	1.65
69170139--69170204	32	2.1	32	94	0	114	42	13	0	43	1.44
69170647--69170692	23	2.0	23	95	0	83	47	10	8	32	1.69
69175975--69176002	14	2.0	14	100	0	56	42	0	21	35	1.53
69183148--69183645	46	10.8	46	93	3	804	18	23	30	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290