Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  116  of  290  ( 34714 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39550574--39550824
54
4.6
54
78
6
249
39
21
8
30
1.84
39550802--39551001
27
7.4
27
85
1
249
36
17
21
25
1.95
39550588--39550850
81
3.2
80
78
8
246
39
21
9
29
1.85
39551204--39551273
25
2.8
25
93
0
113
27
22
22
27
1.99
39551203--39551286
25
3.4
24
86
4
98
29
20
22
27
1.98
39551493--39551575
31
2.8
31
90
5
127
30
15
24
30
1.96
39559870--39559918
21
2.2
21
82
7
53
36
12
4
46
1.60
39560087--39560143
26
2.2
27
84
6
73
31
8
5
54
1.53
39560774--39560809
19
1.9
19
88
5
56
47
8
2
41
1.48
39563624--39563672
24
2.0
24
100
0
98
36
12
32
18
1.88
39563624--39563685
24
2.6
24
89
5
81
40
9
33
16
1.81
39577007--39577104
34
2.9
34
86
3
126
32
6
17
43
1.73
39579240--39579283
21
2.1
21
91
0
70
40
2
29
27
1.68
39580956--39581002
5
9.0
5
78
17
51
38
19
0
42
1.51
39580956--39581001
17
2.8
17
90
6
69
39
17
0
43
1.49
39581247--39581306
4
15.0
4
100
0
120
50
25
0
25
1.50
39587801--39587861
25
2.4
24
73
13
59
40
9
1
47
1.46
39589135--39589216
36
2.2
36
73
2
83
2
21
7
68
1.26
39602958--39603178
56
3.9
56
87
1
318
33
23
14
29
1.93
39607100--39607198
49
2.0
49
98
0
189
41
9
18
31
1.81
39608803--39608985
96
1.9
96
87
0
267
32
26
21
18
1.97
39610646--39610853
104
2.0
104
97
0
389
34
2
26
36
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39611361--39611397
3
12.3
3
100
0
74
0
35
0
64
0.94
39626982--39627009
5
5.6
5
100
0
56
17
0
0
82
0.68
39627675--39627787
54
2.1
54
83
5
138
22
21
16
39
1.92
39629677--39629735
31
1.9
31
89
0
91
45
1
11
40
1.51
39634269--39634330
31
2.0
31
93
0
106
16
22
3
58
1.52
39635096--39635159
32
2.0
32
96
0
119
18
17
31
32
1.94
39642355--39642430
22
3.7
21
76
15
68
40
17
6
35
1.75
39642391--39642445
18
2.9
19
94
5
103
36
16
10
36
1.84
39642564--39642602
21
1.9
20
84
5
51
10
2
15
71
1.23
39642648--39642692
19
2.4
19
88
0
72
37
17
6
37
1.76
39642811--39642850
21
2.0
20
85
5
53
10
2
15
72
1.21
39643043--39643316
45
6.1
45
77
6
259
26
28
14
30
1.95
39643057--39643223
89
1.9
89
89
0
262
27
29
13
29
1.94
39643256--39643429
78
2.2
79
88
4
273
27
24
17
31
1.97
39643534--39644113
44
13.2
44
84
5
733
28
28
14
27
1.95
39645085--39645149
8
7.8
8
80
16
62
3
12
0
84
0.73
39645079--39645132
14
3.7
15
83
11
76
5
9
0
85
0.75
39645078--39645149
22
3.3
21
82
7
90
4
11
0
84
0.75
39645092--39645150
9
6.7
9
75
12
52
3
11
0
84
0.73
39645078--39645139
7
8.9
7
79
13
65
4
9
0
85
0.73
39645078--39645140
14
4.5
13
84
7
72
4
9
0
85
0.72
39650537--39650762
113
2.0
113
98
0
434
45
12
21
19
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39650873--39650948
22
3.7
21
76
15
68
40
17
6
35
1.75
39650909--39650963
18
2.9
19
94
5
103
36
16
10
36
1.84
39651082--39651120
21
1.9
20
84
5
51
10
2
15
71
1.23
39651166--39651210
19
2.4
19
88
0
72
37
17
6
37
1.76
39650920--39651395
247
1.9
246
93
1
819
28
13
17
40
1.88
39651992--39652033
18
2.3
18
91
0
66
50
9
16
23
1.75
39652148--39652312
85
1.9
85
96
0
303
39
26
16
18
1.91
39657101--39657150
18
2.7
18
82
14
66
6
16
4
74
1.17
39660381--39660617
50
4.8
49
76
7
208
25
17
26
30
1.97
39666338--39666594
40
6.4
40
79
6
272
28
27
21
22
1.99
39666338--39666594
80
3.2
79
86
4
340
28
27
21
22
1.99
39672375--39673458
46
23.6
46
95
0
1751
24
22
11
41
1.87
39688129--39688173
20
2.3
20
88
3
65
28
17
26
26
1.98
39688202--39688302
28
3.4
27
70
21
78
24
20
28
25
1.99
39688166--39688302
60
2.3
60
84
6
170
27
19
26
27
1.99
39692724--39692754
14
2.2
14
100
0
62
12
6
6
74
1.21
39697981--39698052
37
1.9
37
91
0
117
43
30
11
15
1.81
39699215--39699243
13
2.3
13
94
5
51
27
10
0
62
1.28
39702420--39702557
66
2.1
66
94
0
240
32
21
0
45
1.57
39702837--39702876
5
8.4
5
79
20
50
2
17
0
80
0.83
39702837--39702871
18
1.9
18
88
11
54
2
17
0
80
0.84
39702836--39702878
23
1.9
22
95
4
77
2
18
0
79
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39703264--39703311
20
2.3
21
75
13
55
43
16
0
39
1.48
39703775--39703814
20
2.0
20
100
0
80
40
35
10
15
1.80
39706942--39707074
41
3.2
41
85
0
185
23
19
6
50
1.71
39707137--39707175
20
2.0
20
94
0
69
23
23
15
38
1.92
39709090--39709208
59
2.0
59
95
0
211
45
20
11
22
1.83
39709102--39709231
59
2.2
58
84
5
163
49
20
7
23
1.74
39714586--39714651
31
2.1
31
83
10
82
53
12
4
30
1.58
39718144--39718224
37
2.2
37
97
0
153
38
4
16
40
1.70
39718626--39718707
40
2.0
40
97
0
155
41
6
4
47
1.50
39719221--39719250
12
2.4
13
88
11
53
26
6
0
66
1.16
39725601--39725632
16
2.0
16
100
0
64
37
25
18
18
1.94
39728320--39728395
34
2.3
34
90
2
118
26
26
6
40
1.80
39743089--39743986
220
4.1
220
90
1
1332
32
16
22
28
1.96
39743876--39744070
44
4.4
44
73
11
189
30
14
25
28
1.95
39751448--39751548
37
2.7
37
82
0
139
36
30
16
15
1.91
39759866--39759895
8
3.6
8
95
4
51
13
0
26
60
1.34
39760212--39760269
30
2.0
30
93
3
100
27
17
24
31
1.97
39761642--39761672
15
2.0
16
93
6
55
58
0
6
35
1.24
39768197--39768265
34
2.0
34
100
0
138
21
17
26
34
1.95
39768205--39768259
17
3.2
17
71
19
60
18
16
27
38
1.92
39770289--39770346
30
2.0
29
96
3
107
27
17
24
31
1.97
39773849--39773883
13
2.8
13
86
4
54
31
0
14
54
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39774020--39774098
3
26.3
3
94
0
140
30
0
2
67
1.04
39774029--39774109
12
6.7
12
92
1
63
29
0
4
65
1.13
39779179--39779264
44
2.0
44
92
0
145
24
15
20
39
1.91
39779633--39779664
16
2.0
16
93
0
55
15
9
0
75
1.05
39779745--39779848
41
2.6
40
73
19
99
27
1
3
66
1.20
39789205--39789255
18
2.8
19
77
11
54
68
0
1
29
1.00
39789197--39789266
28
2.4
29
81
13
81
65
0
2
31
1.07
39791618--39791803
73
2.5
73
99
0
363
40
24
6
27
1.80
39791804--39791829
3
8.7
3
100
0
52
69
0
0
30
0.89
39796047--39796378
73
4.5
73
98
0
637
40
24
6
28
1.79
39799190--39799224
17
2.1
17
100
0
70
51
17
0
31
1.45
39802753--39802787
18
2.0
17
88
5
52
45
0
0
54
0.99
39802662--39803164
120
4.2
120
98
0
979
43
2
5
48
1.37
39802993--39803027
18
2.0
17
88
5
52
45
0
0
54
0.99
39803113--39803147
18
2.0
17
88
5
52
45
0
0
54
0.99
39811156--39811221
34
1.9
34
84
0
87
34
7
16
40
1.77
39813996--39814034
21
1.9
21
94
5
71
28
12
2
56
1.50
39820471--39820633
39
4.2
39
84
2
213
23
21
28
26
1.99
39820471--39820671
39
5.2
39
79
10
148
23
21
28
26
1.99
39834994--39835045
24
2.1
25
85
3
70
61
1
3
32
1.25
39838428--39838458
15
2.0
16
93
6
55
0
0
29
70
0.87
39847326--39847422
30
3.2
30
62
21
74
28
12
7
51
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39847318--39847438
62
2.0
62
100
0
242
28
10
8
52
1.64
39853552--39853608
17
3.4
17
69
9
53
24
19
10
45
1.81
39853549--39853617
34
2.0
34
97
0
129
30
17
10
42
1.82
39856589--39856642
16
3.4
17
72
12
51
40
3
0
55
1.17
39856807--39856844
19
2.0
20
89
5
60
44
13
2
39
1.57
39864661--39864983
160
2.0
160
99
0
637
30
8
31
30
1.86
39869877--39869901
13
1.9
13
100
0
50
40
12
0
48
1.40
39871003--39871044
15
2.7
15
92
3
66
33
9
16
40
1.81
39871579--39871616
18
2.2
18
85
4
51
36
2
10
50
1.51
39879667--39879709
16
2.7
16
85
7
52
72
0
2
25
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290