genome.fa.s7.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  132  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44889877--44889915	17	2.4	16	91	4	60	51	0	5	43	1.24
44890058--44890112	10	5.4	10	75	12	58	60	1	1	36	1.18
44890076--44890126	18	2.8	18	75	16	52	58	1	1	37	1.20
44892491--44892519	11	2.6	11	100	0	58	31	20	31	17	1.96
44897107--44897163	29	1.9	30	85	3	80	17	17	0	64	1.29
44897879--44897921	21	2.0	22	86	4	61	69	4	0	25	1.07
44908025--44908091	31	2.1	32	86	2	91	61	10	2	25	1.43
44908039--44908084	25	2.0	24	83	12	60	65	8	2	23	1.32
44909471--44910239	383	2.0	383	84	2	1006	31	22	13	32	1.93
44914946--44914985	21	2.0	21	85	5	55	10	35	30	25	1.88
44919172--44919244	24	3.1	23	75	7	76	19	2	1	76	0.98
44919173--44919249	5	14.8	5	75	15	68	19	2	1	76	0.97
44919173--44919264	17	5.5	17	73	19	61	19	3	2	75	1.05
44919173--44919264	27	3.5	27	71	18	77	19	3	2	75	1.05
44920993--44921054	6	10.5	6	77	8	65	14	3	4	77	1.06
44920984--44921054	12	6.2	11	80	13	65	14	4	4	77	1.07
44920984--44921054	18	4.1	17	79	15	67	14	4	4	77	1.07
44922882--44922964	30	2.8	30	75	0	85	20	34	30	14	1.92
44929688--44929739	22	2.3	22	78	12	52	57	5	5	30	1.46
44929835--44929888	28	1.9	28	96	0	99	40	20	12	25	1.88
44933350--44933389	18	2.2	19	86	13	57	5	37	0	57	1.21
44939211--44939255	17	2.6	18	82	3	56	28	0	4	66	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44949213--44949262	25	2.0	25	88	7	75	26	2	2	70	1.09
44954519--44954912	125	3.1	126	83	2	499	30	16	13	38	1.88
44954519--44954912	126	3.1	125	82	5	490	30	16	13	38	1.88
44954973--44955065	33	2.7	34	81	3	107	44	15	3	37	1.62
44959110--44959473	46	7.9	46	99	0	719	38	12	24	24	1.90
44964679--44964734	29	2.0	29	86	6	80	44	1	0	53	1.11
44969975--44970052	40	2.0	39	85	11	108	43	15	7	33	1.75
44971362--44971443	40	2.0	40	97	0	155	48	10	10	29	1.72
44977552--44977598	6	7.5	6	77	17	51	29	2	0	68	1.02
44986731--44986789	29	2.0	29	100	0	118	37	10	27	25	1.88
44990984--44991039	28	1.9	29	82	7	69	46	7	1	44	1.41
45000015--45000053	3	13.0	3	100	0	78	66	0	0	33	0.92
45007549--45007598	24	2.1	24	100	0	100	50	24	0	26	1.50
45007720--45007776	18	3.2	17	72	20	53	57	5	5	31	1.43
45009811--45009856	22	2.1	22	95	0	83	54	21	10	13	1.69
45011618--45011867	43	5.8	43	84	0	277	29	25	19	25	1.98
45012705--45012733	13	2.1	14	93	6	51	55	10	0	34	1.34
45016373--45016415	15	2.9	15	79	6	52	62	4	0	32	1.15
45020587--45020627	9	4.6	9	87	0	64	26	0	26	46	1.53
45020594--45020656	18	3.7	17	77	14	76	30	0	25	44	1.54
45020601--45020669	33	2.0	35	91	5	115	31	1	23	43	1.63
45022274--45022352	40	2.0	40	92	0	131	32	17	21	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45024826--45024896	28	2.5	28	81	4	81	29	29	15	25	1.96
45027252--45027312	15	3.9	15	78	8	61	47	36	1	14	1.55
45028529--45028578	14	3.4	15	75	10	50	30	0	18	52	1.46
45028681--45028789	41	2.6	42	89	4	159	21	17	25	35	1.95
45036312--45036361	14	3.4	15	75	10	50	30	0	18	52	1.46
45036463--45036572	42	2.6	42	97	0	202	20	19	26	33	1.96
45038437--45038498	7	8.6	7	72	13	54	27	0	22	50	1.50
45038427--45038500	37	2.0	36	89	2	112	27	0	24	48	1.51
45038792--45038853	29	2.1	29	87	0	88	25	25	22	25	2.00
45038821--45038978	41	3.9	41	86	0	208	24	22	20	32	1.98
45045734--45045774	3	13.7	3	100	0	82	31	0	0	68	0.90
45046911--45046956	22	2.0	22	87	4	65	30	4	32	32	1.77
45046918--45046967	23	2.2	22	85	3	64	30	2	32	36	1.69
45047140--45047178	20	2.0	20	85	10	53	43	2	7	46	1.46
45047193--45047312	38	3.0	39	87	7	161	46	3	20	30	1.66
45049173--45049252	41	1.9	42	87	2	117	65	6	1	27	1.25
45050434--45050814	188	2.0	188	97	0	726	38	12	13	35	1.82
45052247--45052271	7	3.6	7	100	0	50	84	0	0	16	0.63
45052253--45052312	32	1.9	31	87	12	88	65	0	1	33	1.03
45053896--45053928	13	2.6	13	85	4	50	69	3	0	27	1.03
45057097--45057310	46	4.6	46	81	12	233	23	31	19	26	1.98
45057097--45057313	94	2.3	93	85	9	282	23	31	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45057626--45057682	30	1.9	30	85	7	80	28	19	17	35	1.94
45075149--45075187	18	2.2	18	86	9	53	61	12	0	25	1.31
45075272--45075330	30	2.0	30	86	0	82	55	13	5	25	1.58
45079064--45079118	28	1.9	29	81	3	67	45	1	5	47	1.36
45083281--45083322	19	2.4	19	80	11	54	59	2	0	38	1.10
45083843--45084125	3	92.7	3	67	19	126	58	3	5	32	1.38
45084150--45084182	16	2.1	16	88	5	50	66	0	0	33	0.92
45086152--45086186	18	1.9	18	88	11	54	40	2	14	42	1.60
45086926--45086980	24	2.3	24	75	12	60	16	21	20	41	1.90
45094192--45094243	27	1.9	27	100	0	104	19	30	11	38	1.87
45095746--45095845	42	2.4	42	78	9	105	19	26	14	41	1.89
45095827--45095883	21	2.7	21	75	0	60	17	21	19	42	1.90
45095778--45095883	42	2.5	42	84	3	142	16	22	17	43	1.88
45106505--45106546	18	2.3	18	91	0	66	23	26	4	45	1.73
45106949--45107039	33	2.8	32	83	6	96	41	10	1	46	1.46
45112700--45112734	13	2.7	13	86	0	52	28	8	22	40	1.84
45112665--45112742	39	2.0	39	85	9	106	33	6	24	35	1.81
45113302--45113390	19	4.6	20	74	13	87	61	0	6	31	1.22
45113616--45113705	19	4.7	19	76	13	78	33	4	3	58	1.34
45113661--45113763	48	2.1	48	82	7	120	38	2	0	57	1.20
45113642--45113734	28	3.3	27	75	14	71	36	3	1	59	1.21
45113617--45113738	57	2.1	57	79	5	131	36	4	1	58	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45113778--45113939	85	1.9	84	85	6	220	35	5	16	42	1.71
45137148--45137199	16	3.2	15	78	19	52	38	1	1	57	1.21
45137148--45137194	18	2.8	17	84	12	53	38	2	2	57	1.23
45148973--45149022	22	2.4	20	83	9	64	28	24	4	44	1.72
45150593--45150629	10	3.8	10	89	3	58	81	0	0	18	0.70
45150599--45150628	13	2.2	13	94	5	51	80	0	0	20	0.72
45150585--45150628	23	1.9	23	86	9	63	79	2	0	18	0.83
45150592--45150632	14	2.9	14	82	17	57	80	0	0	19	0.71
45151473--45151505	9	3.7	9	91	0	57	0	24	0	75	0.80
45151503--45151550	13	3.6	14	82	2	55	27	4	0	68	1.07
45151506--45151559	17	2.9	19	86	8	67	29	3	0	66	1.09
45151526--45151569	20	2.3	19	81	14	54	36	0	0	63	0.95
45152961--45154349	146	9.1	143	75	16	920	34	13	11	41	1.79
45152896--45154388	161	9.7	156	80	10	1561	35	12	11	40	1.79
45153920--45154418	167	3.0	163	82	8	557	34	12	9	42	1.76
45179583--45179911	96	3.4	94	87	1	442	24	18	29	28	1.98
45179582--45179911	48	6.9	48	81	2	367	24	18	29	28	1.98
45180155--45180180	12	2.2	12	100	0	52	19	15	23	42	1.89
45182385--45182543	43	3.7	44	81	5	164	32	28	16	22	1.96
45182424--45182543	44	2.8	44	87	3	163	32	27	16	23	1.96
45185165--45185212	23	2.1	23	92	0	78	50	14	10	25	1.74
45207953--45208012	26	2.2	29	88	8	90	21	10	6	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45210786--45211243	131	3.5	130	80	6	476	34	16	20	28	1.94
45216841--45216877	19	2.0	20	89	10	60	32	0	0	67	0.91
45217992--45218023	7	4.6	7	96	0	55	15	18	12	53	1.73
45217992--45218034	14	3.1	14	89	0	59	13	25	13	46	1.81
45217992--45218032	21	2.0	21	85	0	55	14	21	14	48	1.80
45221532--45221588	21	2.7	21	75	5	62	35	5	8	50	1.56
45223689--45223721	17	2.1	16	88	11	50	30	0	0	69	0.88
45223768--45223824	21	2.8	21	82	12	66	22	0	7	70	1.11
45225482--45225532	22	2.2	24	89	6	79	23	0	29	47	1.52
45226021--45226399	123	3.0	125	89	3	568	35	18	18	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290