genome.fa.s7.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  212  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73379887--73380062	50	3.5	49	84	3	217	29	27	18	24	1.98
73379887--73380070	101	1.8	99	85	2	260	28	28	18	24	1.98
73385774--73385870	42	2.3	42	85	0	140	21	21	28	27	1.99
73392055--73392477	89	5.0	90	81	9	435	32	15	12	40	1.84
73396144--73396190	20	2.4	20	85	3	69	31	6	10	51	1.62
73401464--73401501	17	2.2	18	85	4	51	31	18	5	44	1.72
73403534--73403581	21	2.3	21	81	0	60	14	39	20	25	1.91
73404988--73405335	190	1.8	190	88	2	529	23	17	16	41	1.89
73413059--73413255	81	2.4	81	92	0	322	26	14	20	39	1.90
73413059--73413255	27	7.3	27	87	4	274	26	14	20	39	1.90
73421304--73421362	21	2.8	22	80	7	61	22	0	8	69	1.15
73421333--73421381	26	2.0	24	88	8	71	30	0	6	63	1.19
73426761--73426923	83	2.0	83	98	0	317	14	23	45	16	1.84
73428232--73428270	17	2.3	17	90	0	60	20	7	0	71	1.10
73432461--73432720	123	2.1	127	83	7	327	38	16	11	33	1.84
73432966--73433254	3	95.0	3	64	18	66	60	3	8	27	1.42
73433633--73433684	25	2.1	24	82	3	59	15	17	9	57	1.64
73433633--73433688	24	2.2	24	84	9	67	14	17	8	58	1.61
73443028--73443142	57	2.0	57	84	0	149	29	20	12	37	1.89
73446213--73446262	21	2.4	21	80	10	57	34	16	6	44	1.72
73446554--73446603	19	2.6	19	84	6	66	40	22	22	16	1.91
73457641--73457710	27	2.6	27	93	0	113	17	27	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73467194--73467612	138	3.0	137	87	3	601	40	9	5	44	1.60
73466934--73467612	261	2.5	267	84	6	804	41	8	5	44	1.58
73467491--73467727	117	2.0	118	89	1	359	40	10	5	43	1.63
73471096--73471150	28	1.9	29	88	3	85	21	38	20	20	1.94
73473926--73473979	21	2.5	20	85	5	63	35	24	24	16	1.95
73478699--73478790	25	3.7	25	86	2	123	30	25	20	23	1.99
73478696--73478790	50	1.9	50	89	4	147	30	24	20	25	1.98
73481232--73481284	27	1.9	28	84	3	72	41	26	24	7	1.81
73485771--73485855	43	2.0	43	81	9	102	28	17	25	28	1.98
73488014--73488133	43	2.8	42	85	7	188	31	15	23	29	1.95
73494355--73494477	27	4.6	27	87	0	129	35	17	18	28	1.93
73494364--73494476	54	2.1	54	84	0	145	37	16	17	28	1.92
73494702--73494811	27	4.0	27	86	3	132	20	23	21	34	1.97
73494817--73495053	78	3.0	78	91	0	384	18	21	29	30	1.96
73495089--73495162	27	2.8	26	85	6	94	18	22	20	37	1.94
73495283--73495346	25	2.6	25	84	0	65	23	17	10	48	1.78
73495308--73495487	6	29.8	6	72	18	117	19	17	12	50	1.77
73495309--73495418	31	3.5	31	72	20	109	20	17	11	50	1.77
73495308--73495460	37	4.4	37	76	14	162	19	18	12	49	1.78
73495342--73495409	28	2.6	27	78	17	79	20	16	11	51	1.75
73495280--73495448	65	2.6	65	87	4	220	21	17	11	49	1.79
73497450--73497568	55	2.2	55	82	0	148	21	24	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73502509--73502595	28	3.1	28	96	0	165	48	10	19	21	1.79
73504712--73505077	138	2.7	138	88	0	516	40	15	22	22	1.91
73504712--73505028	46	6.9	46	93	0	517	40	14	22	23	1.90
73504712--73505072	46	7.8	46	92	0	398	40	14	22	22	1.90
73505160--73505229	26	2.7	25	80	13	79	37	2	21	38	1.68
73508003--73508043	3	13.7	3	100	0	82	65	0	0	34	0.93
73512779--73512816	18	2.2	18	90	9	62	71	2	5	21	1.19
73519885--73520454	285	2.0	281	92	2	955	37	16	15	29	1.91
73527878--73528870	494	2.0	494	97	0	1871	33	16	16	33	1.91
73530972--73531013	21	2.0	21	100	0	84	19	9	14	57	1.64
73531517--73531547	14	2.2	14	100	0	62	58	0	19	22	1.40
73534610--73534680	31	2.2	32	80	5	81	36	5	8	49	1.57
73536345--73536449	55	1.9	56	83	13	137	22	32	21	22	1.98
73537960--73538020	18	3.4	17	73	13	52	37	16	13	32	1.87
73542427--73542467	21	2.0	21	100	0	82	34	24	31	9	1.88
73542668--73542721	22	2.6	19	78	18	63	25	16	20	37	1.93
73544611--73544727	62	1.9	59	84	5	153	41	4	2	52	1.35
73550368--73550428	30	2.0	30	83	0	77	31	22	8	37	1.84
73554523--73554578	17	3.4	17	68	22	55	25	16	25	33	1.95
73554511--73554600	33	2.7	33	100	0	180	23	15	25	35	1.94
73554540--73554594	16	3.4	16	68	22	51	21	14	29	34	1.93
73557714--73557760	22	2.1	22	100	0	94	51	8	6	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73557714--73557768	22	2.6	21	91	8	78	45	7	5	41	1.55
73558296--73558361	20	3.3	20	70	8	53	36	18	25	19	1.94
73558283--73558387	40	2.6	40	76	10	115	39	19	22	19	1.93
73567189--73567259	34	2.1	34	86	5	99	23	25	22	28	2.00
73571227--73571493	48	5.6	48	73	12	149	25	18	25	30	1.98
73572760--73572803	20	2.2	20	88	8	63	20	31	29	18	1.96
73577215--73577392	27	6.6	27	83	3	205	26	15	28	29	1.96
73577216--73577371	82	1.9	81	88	3	233	26	15	28	29	1.96
73577212--73577392	82	2.2	81	83	2	229	27	15	27	29	1.96
73582296--73582466	93	1.8	93	96	0	315	28	29	21	21	1.98
73582288--73582463	46	3.8	46	80	12	225	28	28	21	21	1.98
73584854--73584942	30	3.0	30	79	11	94	56	15	17	10	1.67
73584854--73584936	15	5.6	14	73	10	58	55	16	18	9	1.68
73584865--73584942	15	5.2	15	75	9	70	55	15	17	11	1.69
73587865--73588033	93	1.8	93	89	2	268	28	28	19	23	1.98
73587857--73588032	46	3.8	45	79	10	194	28	28	19	23	1.98
73601623--73601677	21	2.6	21	85	0	74	1	49	18	30	1.58
73602195--73602223	13	2.1	14	93	6	51	55	10	0	34	1.34
73604286--73604364	31	2.5	30	81	4	86	30	25	16	27	1.97
73604548--73604628	25	3.2	24	81	11	83	28	27	16	28	1.97
73604676--73604732	20	2.8	20	97	0	105	35	19	10	35	1.86
73604676--73604734	11	5.7	11	76	15	63	33	18	11	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73612527--73612584	11	5.7	10	75	17	57	34	18	8	37	1.82
73612536--73612583	9	4.9	9	80	14	51	37	20	6	35	1.78
73612527--73612583	20	2.8	20	97	0	105	35	19	8	36	1.83
73612536--73612593	5	11.6	5	75	14	57	37	20	5	36	1.75
73618163--73618283	9	13.6	9	71	12	72	33	1	20	43	1.62
73618180--73618255	36	2.1	36	92	0	125	34	1	18	46	1.58
73618213--73618296	43	2.0	43	92	0	141	34	0	19	46	1.50
73618237--73618468	56	4.2	56	89	5	348	34	0	16	48	1.50
73618237--73618447	113	1.9	112	93	3	361	33	0	17	48	1.51
73618393--73618422	13	2.3	13	100	0	60	36	0	10	53	1.35
73618425--73618455	9	3.4	9	90	0	53	29	0	19	51	1.47
73618628--73618681	16	2.9	20	65	21	53	61	7	1	29	1.34
73618883--73618929	10	5.0	9	80	15	51	51	0	8	40	1.33
73618889--73618943	26	2.1	27	83	10	69	56	0	9	34	1.31
73621414--73621543	60	2.2	59	86	2	172	38	4	36	20	1.73
73621631--73622161	114	4.6	115	78	9	508	39	22	13	25	1.90
73622618--73622670	22	2.4	23	79	17	60	47	32	0	20	1.51
73622635--73622722	14	6.1	15	68	13	51	45	31	1	21	1.59
73622689--73622733	14	3.2	14	87	0	63	48	28	0	22	1.50
73623038--73623079	7	6.0	7	85	0	57	45	50	0	4	1.23
73623368--73623414	14	3.2	14	80	11	58	48	29	2	19	1.60
73624175--73624250	22	3.5	22	73	10	66	22	0	25	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73624291--73624419	41	3.2	41	88	1	188	19	21	23	35	1.96
73624291--73624578	41	7.1	41	77	5	162	22	20	19	38	1.94
73624291--73624577	81	3.5	80	72	7	229	21	20	19	38	1.94
73629980--73630079	29	3.5	29	81	1	121	28	15	28	29	1.96
73634495--73634609	29	4.0	28	84	2	113	26	15	28	28	1.96
73634508--73634616	29	3.8	29	81	3	114	26	16	29	27	1.97
73634508--73634618	57	1.9	58	83	1	143	26	16	29	27	1.97
73634901--73635471	286	2.0	286	97	0	1072	28	17	25	28	1.97
73635649--73636125	238	2.0	238	100	0	954	29	10	15	44	1.79
73636424--73636456	17	1.9	17	100	0	66	36	21	18	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290