genome.fa.s7.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  108  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36860056--36860143	33	2.7	33	89	0	131	25	11	38	25	1.89
36862023--36862059	18	2.1	17	95	5	65	13	0	10	75	1.04
36861984--36862092	50	2.2	50	91	3	175	22	3	10	64	1.40
36884026--36884059	12	2.9	12	86	4	52	32	0	0	67	0.91
36884180--36884237	30	1.9	30	92	0	98	56	13	6	22	1.61
36886448--36886508	25	2.4	25	83	5	70	13	9	4	72	1.27
36888095--36888161	31	2.2	29	81	5	71	44	13	8	32	1.75
36888375--36888451	31	2.5	31	93	0	127	42	5	12	38	1.66
36892442--36892594	75	2.0	76	97	1	290	35	17	10	35	1.84
36895405--36895446	13	3.2	13	82	0	57	35	21	4	38	1.75
36907113--36907178	34	1.9	34	81	0	78	36	16	6	40	1.73
36909658--36909695	17	2.1	19	85	9	53	63	2	0	34	1.09
36909612--36909748	65	2.1	65	97	0	256	54	4	3	37	1.38
36909612--36909715	32	3.2	31	67	22	88	51	5	4	37	1.47
36914084--36914395	47	6.6	48	74	12	190	27	18	29	24	1.98
36914084--36914391	96	3.3	93	73	13	265	27	18	29	24	1.98
36918825--36918849	11	2.3	11	100	0	50	44	24	32	0	1.54
36925979--36926172	97	2.0	97	97	0	370	38	27	12	21	1.90
36926176--36926228	26	2.0	27	85	7	74	28	9	22	39	1.85
36927714--36927797	26	3.2	26	96	0	150	36	25	4	33	1.77
36933346--36933403	28	2.0	29	83	3	73	43	3	22	31	1.70
36938434--36938505	36	2.0	36	94	0	126	31	6	20	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36941431--36941560	47	2.8	47	88	2	181	24	16	26	33	1.96
36942998--36943145	47	3.0	50	82	8	176	22	16	27	33	1.95
36943011--36943188	47	3.7	48	80	11	159	22	15	28	33	1.94
36944619--36944651	16	2.1	16	88	11	50	36	15	15	33	1.88
36945475--36945521	15	3.1	16	69	12	53	27	27	27	17	1.97
36945866--36945963	44	2.2	44	79	0	115	29	21	22	26	1.99
36948536--36948583	20	2.5	20	86	3	62	64	2	6	27	1.28
36948578--36948639	27	2.3	26	76	13	63	48	11	1	38	1.49
36954224--36954270	3	16.7	3	79	20	57	68	0	0	31	0.90
36954225--36954280	5	10.6	5	83	11	51	69	0	1	28	0.98
36960699--36960730	10	3.3	10	95	4	57	62	0	6	31	1.20
36960726--36960787	27	2.3	26	76	13	63	48	11	1	38	1.49
36964088--36964118	7	4.4	7	91	0	53	70	3	0	25	1.02
36965378--36965445	24	2.8	23	80	8	73	25	19	5	50	1.70
36968291--36968374	31	2.8	31	81	3	91	26	13	7	53	1.64
36969162--36969201	20	2.0	20	85	4	55	72	5	0	22	1.04
36969154--36969211	27	2.1	29	83	6	75	70	3	0	25	1.03
36979378--36979436	19	3.1	19	80	0	55	22	10	1	66	1.31
36983690--36983725	17	2.1	17	100	0	72	61	5	5	27	1.41
36984974--36985043	19	3.6	19	68	28	58	61	8	25	4	1.43
36984967--36985048	40	2.0	40	100	0	164	54	9	26	8	1.61
36988188--36988216	14	2.1	14	100	0	58	65	6	6	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36992261--36992294	3	11.3	3	100	0	68	35	0	32	32	1.58
36992693--36992754	31	2.0	32	93	3	108	33	4	3	58	1.36
36993697--36993767	35	2.0	35	100	0	142	32	11	22	33	1.90
36998220--36998281	29	2.2	28	80	5	70	20	19	27	32	1.97
36999876--36999949	29	2.6	29	91	0	121	20	18	33	27	1.96
37002764--37002874	47	2.4	47	81	6	136	36	22	15	26	1.94
37011990--37012099	47	2.3	47	83	6	143	35	21	16	26	1.94
37012958--37013046	44	2.0	44	95	0	160	28	30	20	21	1.98
37012971--37013133	45	3.7	44	79	9	168	32	27	18	21	1.97
37015909--37015977	15	4.6	15	80	3	77	56	17	13	13	1.67
37015955--37015984	15	2.0	15	93	0	51	63	20	3	13	1.43
37016054--37017444	696	2.0	697	97	0	2649	37	20	11	30	1.88
37020498--37020620	45	2.7	45	81	5	151	32	30	15	21	1.94
37022690--37022749	30	2.0	30	93	0	102	56	13	3	26	1.52
37032885--37032912	13	2.2	13	100	0	56	28	7	14	50	1.69
37042818--37042861	21	2.1	21	83	8	54	25	9	2	63	1.35
37048133--37048214	18	4.6	18	95	0	128	28	10	26	34	1.90
37058862--37058907	20	2.3	20	96	0	83	8	32	19	39	1.82
37060115--37060299	50	3.6	50	80	5	183	27	21	28	22	1.99
37060395--37060480	43	2.0	43	100	0	172	32	16	23	27	1.96
37063392--37063954	278	2.0	278	95	0	1000	28	12	22	36	1.91
37068150--37068347	50	3.8	50	83	4	207	27	20	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37069711--37069779	20	3.4	19	78	9	75	10	27	23	39	1.87
37080080--37080141	21	3.0	21	80	4	72	58	0	1	40	1.08
37080080--37080160	20	4.0	20	81	10	76	59	0	1	39	1.05
37080119--37080168	19	2.7	19	82	11	59	68	0	0	32	0.90
37089448--37089495	3	16.0	3	82	0	60	60	2	4	33	1.27
37093100--37093141	15	2.7	16	82	14	52	52	2	0	45	1.13
37093109--37093270	15	10.9	15	66	22	58	50	3	1	44	1.27
37093103--37093321	120	1.8	120	97	0	420	49	5	1	43	1.34
37110331--37110380	25	2.0	25	88	7	75	64	2	0	34	1.05
37110317--37110380	25	2.5	26	77	12	69	60	3	0	35	1.12
37110307--37110391	19	4.7	19	69	24	58	60	4	0	35	1.18
37110377--37110445	28	2.4	28	85	2	93	59	5	7	27	1.47
37110592--37110637	23	2.0	23	83	8	58	34	4	4	56	1.39
37116912--37116977	25	2.6	26	83	9	82	28	24	16	30	1.97
37118272--37118319	23	2.1	23	84	7	62	29	14	6	50	1.67
37120917--37120957	14	2.9	14	88	0	55	41	4	53	0	1.22
37139512--37139543	17	1.9	17	93	6	57	21	0	28	50	1.49
37146052--37146129	40	2.0	40	89	0	120	19	12	32	35	1.89
37146053--37146145	40	2.4	39	79	13	102	18	11	34	35	1.87
37148862--37148935	37	2.0	37	100	0	148	32	18	5	43	1.73
37158647--37158684	14	2.8	14	88	4	51	39	2	18	39	1.65
37158672--37158711	19	2.1	19	100	0	80	25	10	17	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37160137--37160218	32	2.6	32	88	0	119	52	17	1	29	1.52
37161640--37161681	21	2.0	21	85	0	57	45	9	7	38	1.64
37170944--37170990	19	2.6	18	83	9	60	29	17	6	46	1.72
37177838--37177897	29	2.1	27	82	11	68	31	26	21	20	1.98
37183586--37184058	27	17.5	26	78	7	126	35	20	9	34	1.85
37183559--37183731	81	2.2	80	81	3	204	39	19	8	32	1.82
37183587--37183734	54	2.7	55	77	6	151	40	20	8	30	1.83
37183684--37184096	81	5.1	80	71	7	253	32	21	9	36	1.85
37183714--37184128	54	7.6	54	80	4	361	31	21	9	37	1.85
37183941--37184013	28	2.6	28	93	2	121	41	20	8	30	1.81
37183941--37184040	28	3.6	28	85	4	96	41	21	10	28	1.85
37184037--37184128	27	3.4	27	89	0	130	26	20	9	43	1.83
37184133--37184407	27	10.2	27	80	8	274	36	19	18	25	1.94
37184133--37184390	81	3.2	80	83	8	326	36	20	17	25	1.94
37184653--37184704	27	2.0	26	88	3	77	17	25	21	36	1.94
37184634--37184854	67	3.3	67	99	0	433	16	28	23	30	1.96
37184957--37185035	6	12.8	6	79	15	90	18	18	13	48	1.81
37184960--37185024	25	2.6	25	95	0	112	18	20	15	46	1.84
37184957--37185045	31	2.9	31	76	17	105	21	16	14	47	1.83
37184986--37185044	18	3.2	17	79	11	64	20	15	15	49	1.80
37187580--37187608	11	2.5	12	94	5	51	6	17	0	75	1.01
37188567--37188632	18	3.5	18	74	22	55	77	4	3	15	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37188613--37188639	13	2.1	13	100	0	54	77	0	0	22	0.76
37188686--37188783	8	12.0	8	71	8	56	75	1	4	19	1.02
37188730--37188775	17	2.6	18	79	10	58	71	0	2	26	0.97
37188816--37188942	22	6.3	20	69	20	88	67	2	1	28	1.12
37188768--37188946	78	2.4	78	91	4	287	65	1	2	30	1.17
37192936--37193004	26	2.7	26	83	0	93	43	23	17	15	1.87
37193013--37193070	27	2.2	26	84	9	73	39	17	20	22	1.92
37198279--37198351	26	2.7	27	80	2	85	38	23	21	16	1.93
37198288--37198382	27	3.6	27	80	2	104	37	23	21	17	1.94
37198484--37198535	27	1.9	27	84	7	70	30	19	21	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290