genome.fa.s7.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  110  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37499154--37499291	54	2.6	53	81	4	143	30	10	21	37	1.87
37499182--37499293	27	4.2	26	87	3	134	30	10	22	36	1.88
37499272--37499309	18	2.1	18	100	0	76	36	10	21	31	1.87
37499355--37499552	27	7.3	27	89	2	281	38	7	25	28	1.83
37501023--37501052	16	1.9	16	93	6	53	53	6	0	40	1.27
37501052--37501323	100	2.7	102	89	5	428	54	17	0	27	1.46
37501070--37501224	50	3.1	50	63	23	117	55	17	0	27	1.42
37501519--37501637	60	2.0	60	96	0	220	53	12	0	33	1.39
37503521--37503555	13	2.7	13	95	0	61	0	11	31	57	1.34
37504579--37504626	23	2.1	23	96	0	87	41	14	16	27	1.87
37509891--37509933	10	4.3	10	82	8	52	2	18	0	79	0.85
37509894--37509940	14	3.4	14	80	8	51	2	19	0	78	0.85
37510295--37510351	25	2.2	28	84	12	77	66	0	0	33	0.92
37510282--37510352	24	2.8	25	75	10	74	63	1	0	35	1.03
37510282--37510352	25	2.8	25	76	16	76	63	1	0	35	1.03
37511229--37512179	476	2.0	475	95	1	1699	21	12	17	48	1.80
37517202--37517268	26	2.7	25	82	11	75	26	23	23	25	2.00
37517230--37517284	26	2.1	26	83	12	69	29	18	23	29	1.98
37517493--37517607	31	3.7	31	94	1	196	33	16	25	24	1.96
37522988--37523034	13	3.6	13	76	0	58	23	36	29	10	1.89
37522985--37523042	26	2.2	26	96	0	107	18	34	29	17	1.94
37536885--37536916	17	1.9	16	93	6	55	62	3	34	0	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37539320--37539393	24	3.1	24	94	0	121	31	5	41	21	1.76
37540823--37540934	27	4.2	26	80	8	118	16	22	22	38	1.93
37540821--37540934	54	2.1	53	85	4	149	16	21	22	38	1.93
37543790--37543820	3	10.3	3	92	0	53	29	0	3	67	1.06
37544052--37544131	40	2.0	40	95	0	142	46	10	12	31	1.75
37544270--37544303	12	2.8	12	83	16	52	41	0	5	52	1.25
37544356--37544391	18	2.0	18	88	0	54	44	0	2	52	1.15
37545173--37545220	26	1.9	24	87	8	69	37	0	10	52	1.36
37545182--37545212	15	2.1	15	100	0	62	35	0	12	51	1.40
37545752--37545802	13	4.0	13	82	2	59	49	0	23	27	1.51
37555075--37555250	46	3.8	45	78	12	196	22	20	27	29	1.98
37555072--37555242	93	1.8	93	93	0	297	22	21	28	28	1.99
37556653--37556686	12	2.8	12	83	16	52	41	0	5	52	1.25
37556718--37556754	18	2.1	18	89	0	56	43	0	2	54	1.14
37556748--37556773	9	2.9	9	100	0	52	34	0	7	57	1.27
37557927--37558002	39	2.0	38	82	7	91	22	23	27	26	1.99
37562174--37562212	17	2.3	17	95	0	69	30	48	7	12	1.69
37573057--37573082	13	2.0	13	100	0	52	46	0	0	53	1.00
37573992--37574039	20	2.5	20	86	3	62	64	2	6	27	1.28
37574026--37574069	17	2.4	18	77	14	54	56	9	0	34	1.31
37574034--37574098	28	2.3	27	76	10	67	49	10	0	40	1.38
37574064--37574094	16	1.9	16	93	0	53	38	9	0	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37576188--37576260	20	3.8	19	70	15	60	72	0	1	26	0.93
37576210--37576273	12	5.7	11	72	22	53	71	0	3	25	1.00
37576176--37576258	3	29.0	3	73	20	63	71	0	1	27	0.94
37576176--37576261	18	4.8	20	77	17	82	70	0	1	27	0.94
37576182--37576273	44	2.2	40	86	7	121	71	0	2	26	0.97
37580330--37580355	13	2.0	13	100	0	52	46	0	0	53	1.00
37580736--37580773	17	2.1	19	90	9	62	55	5	13	26	1.59
37581485--37581516	10	3.3	10	95	4	57	62	0	6	31	1.20
37581504--37581547	17	2.4	18	77	14	54	56	9	0	34	1.31
37581512--37581576	28	2.3	27	76	10	67	49	10	0	40	1.38
37581542--37581572	16	1.9	16	93	0	53	38	9	0	51	1.35
37586238--37586282	19	2.4	19	85	3	65	17	15	0	66	1.25
37590956--37590999	22	1.9	22	86	9	61	34	18	2	45	1.62
37600178--37600204	12	2.2	12	100	0	54	18	29	29	22	1.97
37614118--37614166	25	2.0	24	95	0	80	24	10	28	34	1.88
37615419--37615460	22	1.9	22	85	0	57	71	0	7	21	1.09
37616988--37617111	49	2.5	49	80	5	142	25	24	18	31	1.98
37617129--37617340	94	2.3	93	81	6	243	25	26	19	29	1.98
37618512--37618692	27	6.7	27	82	2	211	39	20	16	23	1.91
37618516--37618711	81	2.4	81	85	0	257	38	19	16	25	1.92
37619343--37619477	67	2.0	67	89	0	207	18	28	22	30	1.97
37619432--37619489	27	2.1	27	81	6	64	17	24	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37627973--37628006	15	2.3	15	94	0	59	11	44	26	17	1.83
37630543--37630754	35	6.0	35	99	0	415	36	14	11	37	1.82
37631140--37632080	84	11.2	84	98	0	1674	26	20	20	32	1.97
37632005--37632715	119	6.0	119	95	0	1174	29	18	18	33	1.95
37632710--37632886	44	4.0	44	75	8	189	28	25	15	30	1.96
37633757--37633801	21	2.1	22	87	4	65	4	22	0	73	1.01
37633762--37633822	21	2.8	21	80	16	70	3	16	0	80	0.84
37633767--37633825	12	4.6	13	76	16	61	1	15	0	83	0.74
37633764--37633825	11	5.7	10	79	20	63	1	14	0	83	0.71
37633767--37633823	16	3.8	15	78	15	64	1	15	0	82	0.75
37636760--37636839	42	1.9	42	94	0	142	36	27	6	30	1.81
37639731--37639837	7	15.7	7	68	20	50	57	0	4	38	1.20
37639769--37639833	21	3.1	21	78	8	62	61	0	4	33	1.16
37639771--37639831	28	2.2	29	77	19	67	59	0	4	36	1.19
37639853--37639883	12	2.5	13	89	10	55	64	0	0	35	0.94
37639858--37639888	16	2.0	15	93	6	53	64	0	0	35	0.94
37640186--37640244	17	3.4	17	78	17	66	33	13	10	42	1.78
37640193--37640246	17	2.9	18	89	10	83	35	12	11	40	1.79
37641468--37641523	26	2.2	26	100	0	112	35	26	7	30	1.83
37644305--37644330	9	2.9	9	100	0	52	92	0	7	0	0.39
37653369--37653496	48	2.7	46	75	4	148	25	27	17	30	1.97
37655010--37655167	58	2.9	54	80	11	164	43	6	18	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37656494--37656522	14	2.1	14	100	0	58	58	0	6	34	1.25
37657531--37657581	26	2.0	26	96	0	93	27	11	17	43	1.84
37662753--37662842	42	2.1	42	89	4	137	20	15	37	26	1.92
37664625--37664682	26	2.3	25	85	5	80	39	15	6	37	1.74
37664826--37664888	6	10.5	6	92	0	81	15	23	0	60	1.35
37664826--37664889	18	3.6	18	84	0	92	15	23	0	60	1.34
37671917--37671964	17	2.8	17	78	6	53	31	25	18	25	1.98
37676542--37676628	45	1.9	45	90	0	138	36	26	13	22	1.92
37677867--37677952	45	1.9	44	83	2	109	27	11	22	38	1.89
37688704--37688858	43	3.7	42	79	5	152	34	23	16	25	1.95
37688698--37688850	42	3.6	41	77	9	148	33	24	16	25	1.96
37700976--37701013	16	2.4	16	90	0	58	39	13	26	21	1.89
37706846--37706874	3	9.7	3	100	0	58	0	31	0	68	0.89
37708696--37708779	26	3.2	25	88	6	123	33	4	25	36	1.77
37710397--37710592	27	7.3	27	85	1	259	17	25	21	35	1.95
37710395--37710592	54	3.7	54	87	5	285	17	24	22	35	1.95
37710397--37710580	81	2.3	80	89	2	287	18	26	21	34	1.96
37725063--37725157	47	2.0	47	100	0	190	31	16	23	28	1.96
37741126--37741223	40	2.5	40	88	5	137	22	28	23	25	1.99
37750788--37750853	32	2.1	32	97	0	123	37	6	24	31	1.80
37754888--37754959	26	2.8	26	83	8	85	30	16	6	45	1.74
37756478--37756503	12	2.2	12	100	0	52	7	15	30	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37756558--37756694	41	3.4	41	95	1	249	32	24	24	18	1.97
37756866--37756962	49	2.0	46	86	5	131	28	4	25	41	1.74
37764215--37764265	25	2.1	25	89	7	79	31	11	5	50	1.62
37764906--37764940	16	2.3	15	90	5	52	62	2	2	31	1.24
37765054--37765113	23	2.9	20	70	15	59	56	5	6	31	1.47
37765139--37765207	25	2.8	24	80	6	75	56	4	5	33	1.43
37765090--37765300	23	8.9	25	73	10	122	54	3	7	34	1.45
37765090--37765298	48	4.4	48	73	12	121	55	3	7	33	1.46
37765255--37765300	25	1.9	25	86	8	69	60	0	4	34	1.16
37766484--37766644	87	1.9	87	82	0	205	35	19	16	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290