genome.fa.s7.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  129  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43790195--43790300	54	2.0	53	83	9	135	32	29	23	15	1.95
43803056--43803106	11	4.7	10	86	13	66	27	33	0	39	1.57
43803097--43803139	22	1.9	23	90	4	70	23	18	4	53	1.63
43803097--43803139	23	1.9	22	86	13	61	23	18	4	53	1.63
43804284--43804309	7	3.7	7	100	0	52	26	0	15	57	1.38
43805351--43805976	127	4.9	127	96	1	1112	35	3	4	55	1.39
43809358--43809407	24	2.1	24	85	7	66	54	28	0	18	1.44
43809871--43809937	29	2.2	28	82	12	80	71	4	0	23	1.04
43809884--43809941	30	1.9	30	89	6	91	70	3	0	25	1.03
43810610--43810652	11	4.0	11	84	3	61	30	2	46	20	1.63
43810610--43810652	21	2.0	21	90	4	68	30	2	46	20	1.63
43814699--43814791	18	5.2	18	90	0	150	31	16	24	27	1.96
43814699--43814791	36	2.6	36	94	0	168	31	16	24	27	1.96
43819021--43819135	57	2.0	59	82	3	144	28	8	8	53	1.61
43820476--43820532	27	2.1	27	100	0	114	36	3	7	52	1.46
43821274--43821381	5	21.4	5	71	9	67	38	18	1	40	1.61
43821867--43821930	29	2.2	29	82	0	83	23	37	20	18	1.94
43827150--43827183	16	2.1	17	88	5	52	64	5	17	11	1.45
43834948--43835000	20	2.7	19	80	8	54	41	9	11	37	1.73
43835234--43835318	42	2.0	42	84	4	109	28	27	28	16	1.97
43843339--43843402	31	2.1	31	87	0	92	37	14	12	35	1.83
43843477--43843790	173	1.8	174	92	3	535	36	19	5	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43843856--43843898	17	2.5	18	81	11	54	32	18	0	48	1.48
43844962--43845002	12	3.1	13	86	13	57	0	26	0	73	0.84
43844971--43845055	16	5.2	16	72	13	59	3	21	4	70	1.21
43845539--43845568	13	2.3	13	94	0	51	43	20	16	20	1.88
43845879--43846385	255	2.0	255	96	0	935	43	14	15	26	1.85
43846388--43846459	28	2.6	28	93	0	117	47	11	12	29	1.76
43846631--43846700	2	35.0	2	97	0	131	1	0	48	50	1.09
43848596--43848710	43	2.7	43	82	5	135	33	24	15	26	1.95
43850718--43850785	28	2.4	28	85	0	100	29	26	11	32	1.92
43850825--43850903	40	2.0	40	80	9	90	39	21	12	26	1.89
43857440--43857566	63	2.0	63	96	0	236	45	18	11	25	1.81
43865878--43865964	29	3.0	29	94	0	156	35	18	16	29	1.92
43868441--43868468	4	7.0	4	100	0	56	25	0	0	75	0.81
43873774--43873853	38	2.1	39	81	6	92	51	12	7	28	1.67
43878118--43878160	18	2.4	18	84	7	52	34	20	11	32	1.89
43879779--43879827	24	2.0	25	84	4	64	4	24	2	69	1.17
43883128--43883162	18	2.0	18	88	5	54	74	2	0	22	0.95
43883434--43883482	23	2.2	24	85	10	68	69	0	20	10	1.17
43884924--43885019	28	3.4	28	78	7	88	22	23	26	27	2.00
43885245--43885287	23	1.9	23	90	4	70	44	16	6	32	1.74
43885244--43885297	23	2.4	21	82	11	63	40	16	11	31	1.84
43885446--43885542	45	2.2	45	81	3	106	23	12	21	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43886009--43886061	25	2.2	25	93	3	90	35	11	5	47	1.63
43888192--43888296	50	2.1	51	85	1	140	34	18	7	40	1.79
43888242--43888524	78	3.7	76	82	6	349	36	19	7	37	1.80
43888447--43888500	21	2.6	21	80	11	67	38	18	3	38	1.69
43897507--43897587	40	2.0	42	81	16	98	38	8	1	51	1.41
43898323--43898380	22	2.7	22	72	2	55	63	8	10	17	1.49
43900638--43900679	21	2.0	21	90	0	66	40	0	19	40	1.51
43901228--43901289	25	2.5	25	91	0	97	24	24	20	30	1.99
43906064--43906096	7	4.9	7	92	7	59	60	0	0	39	0.97
43906622--43906680	20	3.0	19	77	5	55	47	15	6	30	1.71
43910030--43910074	23	2.0	23	95	0	81	24	4	15	55	1.59
43922735--43922768	14	2.6	13	90	9	52	26	5	5	61	1.42
43925199--43925247	20	2.5	20	86	6	64	40	12	8	38	1.72
43925215--43925266	20	2.7	20	84	3	61	46	11	9	32	1.73
43925215--43925266	19	2.7	19	82	8	52	46	11	9	32	1.73
43925932--43926030	48	2.1	48	100	0	198	20	16	15	48	1.81
43927354--43927391	20	1.9	20	88	0	58	47	13	13	26	1.79
43927363--43927407	20	2.2	20	88	0	63	48	11	8	31	1.69
43935927--43935956	7	4.3	7	100	0	60	43	26	0	30	1.55
43937617--43937681	31	2.1	31	91	0	103	49	10	7	32	1.66
43938021--43938079	31	1.9	31	89	0	91	30	18	11	38	1.87
43939436--43939528	18	5.2	18	90	0	150	27	24	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43949600--43949663	30	2.2	30	83	8	78	26	4	6	62	1.39
43951320--43951496	90	2.0	90	80	5	205	39	16	9	33	1.82
43951634--43951687	28	2.0	28	85	7	76	59	3	0	37	1.15
43951894--43951969	21	3.7	20	75	10	73	28	6	2	61	1.34
43951985--43952036	19	2.7	20	78	3	61	28	5	3	61	1.37
43951927--43952038	48	2.3	48	76	11	113	29	7	3	59	1.41
43952201--43952476	93	3.1	89	80	9	276	34	7	17	39	1.79
43954375--43954428	9	5.6	9	81	14	63	38	1	1	57	1.20
43954375--43954428	21	2.8	18	79	17	63	38	1	1	57	1.20
43954523--43954666	12	11.8	12	65	22	52	32	4	3	59	1.36
43954517--43954579	26	2.5	24	80	16	74	36	0	4	58	1.19
43954607--43954661	24	2.3	25	79	20	64	25	9	1	63	1.34
43954803--43954857	17	3.0	18	79	12	51	36	0	0	63	0.95
43954767--43954841	29	2.5	32	77	12	88	32	2	1	64	1.16
43954803--43954843	16	2.6	16	84	3	57	36	0	0	63	0.95
43954820--43954978	84	1.9	79	80	10	178	32	6	4	57	1.44
43954943--43954984	18	2.4	17	88	8	57	38	2	2	57	1.25
43955182--43955265	26	3.1	27	78	13	68	29	5	4	59	1.42
43955203--43955262	28	2.1	28	85	11	79	30	6	3	60	1.39
43956079--43956111	16	2.1	16	88	5	50	18	3	12	66	1.36
43967228--43967257	14	2.1	14	93	0	51	16	10	6	66	1.41
43967093--43967502	89	4.7	89	85	3	489	27	16	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43967515--43967733	78	2.8	78	82	4	219	30	19	20	30	1.97
43967454--43967742	76	3.8	76	77	5	287	26	17	21	34	1.95
43967437--43967733	154	1.9	155	84	3	402	28	18	20	32	1.96
43967782--43967839	29	2.0	29	89	0	89	18	17	36	27	1.94
43968816--43968845	10	3.1	10	90	9	53	83	6	0	10	0.81
43969411--43969461	21	2.7	18	87	9	66	41	3	1	52	1.31
43969549--43969611	26	2.5	24	80	16	74	36	0	4	58	1.19
43969639--43969692	24	2.3	23	78	18	58	24	9	1	64	1.32
43969834--43969889	20	2.9	19	76	15	62	35	0	0	64	0.94
43969839--43969875	17	2.2	17	90	0	56	35	0	0	64	0.94
43969975--43970014	18	2.2	18	100	0	80	40	5	0	55	1.22
43970225--43970284	28	2.1	28	85	11	79	30	6	3	60	1.39
43969979--43971013	523	2.0	517	96	2	1936	30	11	6	51	1.63
43970492--43970527	18	2.0	17	89	10	54	38	2	0	58	1.13
43970727--43970810	26	3.1	27	78	13	68	29	5	4	59	1.42
43970748--43970807	28	2.1	28	85	11	79	30	6	3	60	1.39
43971330--43971413	26	3.1	27	78	13	68	29	5	4	59	1.42
43971351--43971410	28	2.1	28	85	11	79	30	6	3	60	1.39
43971494--43971572	40	2.0	40	97	0	149	32	12	5	49	1.63
43974288--43974857	131	4.3	130	81	4	475	35	17	18	28	1.94
43974471--43974864	136	3.0	132	82	5	413	34	16	18	29	1.93
43974635--43974890	136	1.9	136	86	6	367	32	16	18	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43978051--43978248	45	4.5	45	69	13	158	25	26	19	29	1.98
43977876--43978263	132	2.9	133	88	3	572	26	24	21	28	1.99
44004990--44005065	26	2.9	26	86	0	107	31	17	9	42	1.80
44005316--44005344	9	3.0	10	90	10	51	20	17	0	62	1.33
44008065--44008122	30	1.9	30	82	6	73	20	27	29	22	1.99
44010814--44010851	17	2.2	18	85	4	51	31	18	36	13	1.89
44019656--44019710	27	2.0	27	92	0	92	25	18	20	36	1.94
44030973--44031297	162	2.0	163	93	1	555	20	20	22	36	1.96
44036699--44036766	30	2.3	30	82	5	75	48	5	17	27	1.70
44038790--44038929	46	3.0	46	86	2	183	40	14	23	21	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290