genome.fa.s7.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  149  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50637267--50637333	28	2.4	28	82	9	75	31	23	13	31	1.93
50638237--50638271	18	1.9	18	88	11	54	51	14	0	34	1.42
50641750--50641781	15	2.0	17	88	11	50	37	18	12	31	1.88
50642790--50642846	29	2.0	29	96	0	105	50	15	12	21	1.76
50645618--50645879	132	2.0	132	93	0	443	36	20	18	24	1.95
50645994--50646045	26	2.0	26	96	0	95	26	28	3	40	1.74
50658163--50658362	106	1.9	106	80	6	235	48	12	8	31	1.70
50658468--50658525	19	3.0	20	76	23	61	62	5	5	27	1.38
50658570--50658596	12	2.2	12	100	0	54	66	0	0	33	0.92
50658637--50658674	19	2.0	19	89	0	58	63	0	2	34	1.09
50672175--50672212	19	2.0	19	89	0	58	63	0	2	34	1.09
50683565--50683602	20	1.9	20	88	0	58	36	31	13	18	1.89
50683701--50683749	25	2.0	25	83	0	62	40	16	8	34	1.78
50685567--50685608	6	6.8	6	91	2	57	16	21	0	61	1.34
50687490--50687530	21	2.0	21	85	0	55	17	29	14	39	1.89
50697109--50697146	18	2.1	19	85	5	51	55	0	26	18	1.43
50699323--50699574	68	3.8	66	75	11	198	24	29	16	29	1.97
50701655--50701763	49	2.2	49	81	1	130	46	5	22	25	1.73
50702392--50702451	25	2.4	25	100	0	120	68	11	5	15	1.36
50715143--50715178	14	2.7	13	91	4	54	77	0	22	0	0.76
50722804--50722858	20	2.8	20	72	25	53	14	27	18	40	1.89
50730408--50730438	12	2.5	12	94	5	53	74	6	3	16	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50734864--50734978	46	2.4	48	85	5	146	29	20	27	22	1.98
50738556--50738584	6	4.8	6	100	0	58	13	51	0	34	1.42
50739527--50739566	18	2.4	17	87	8	55	40	7	5	47	1.54
50741683--50741722	21	1.9	21	100	0	80	40	2	20	37	1.66
50741681--50741740	21	2.9	21	85	5	68	41	3	21	33	1.70
50741809--50741854	15	3.0	16	84	12	53	36	0	0	63	0.95
50742031--50742069	17	2.3	17	90	0	60	30	0	17	51	1.46
50745990--50746015	11	2.4	11	100	0	52	46	0	0	53	1.00
50747344--50747385	18	2.2	18	87	8	57	35	2	11	50	1.52
50747357--50747398	18	2.3	19	80	12	52	33	0	11	54	1.37
50748534--50748571	20	1.9	20	94	0	67	42	5	10	42	1.62
50748601--50748640	21	2.0	20	85	14	55	37	5	7	50	1.53
50749045--50749080	3	12.0	3	100	0	72	33	0	0	66	0.92
50758281--50758442	43	3.8	42	75	8	121	34	24	16	24	1.95
50771752--50771776	13	1.9	13	100	0	50	44	40	16	0	1.47
50776463--50776577	29	4.0	28	75	6	88	28	28	15	26	1.96
50776794--50776844	24	2.1	24	92	0	84	11	23	15	49	1.78
50780693--50780765	36	2.0	37	89	2	112	26	9	28	35	1.88
50792060--50792285	40	5.7	40	87	3	271	26	28	21	23	1.99
50806200--50806251	16	3.2	16	77	0	50	48	0	3	48	1.20
50806206--50806256	17	3.0	17	79	0	57	50	0	1	47	1.12
50807705--50807754	9	5.2	9	77	13	55	58	2	14	26	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50812485--50812706	121	1.8	120	85	6	315	30	31	17	20	1.95
50813627--50813719	44	2.1	45	84	6	118	27	21	17	33	1.96
50813690--50813747	29	2.0	29	100	0	116	17	20	20	41	1.90
50813719--50813895	44	4.0	43	85	9	250	27	22	22	28	1.99
50813619--50813835	117	1.9	116	89	0	335	26	22	20	30	1.98
50814193--50814237	21	2.1	21	100	0	90	0	57	17	24	1.40
50814796--50814833	19	2.1	18	85	9	51	52	0	7	39	1.31
50820417--50820456	21	1.9	21	89	0	62	47	12	7	32	1.69
50825652--50825682	15	2.1	15	93	0	53	32	9	0	58	1.31
50825715--50825756	22	1.9	22	90	0	66	40	33	7	19	1.78
50826051--50826102	25	2.1	25	96	0	95	42	21	7	28	1.80
50826261--50826336	39	2.0	38	85	7	102	40	23	5	30	1.77
50826513--50826731	41	5.4	41	92	0	332	20	23	21	35	1.96
50826513--50826772	123	2.1	122	85	4	337	19	22	21	36	1.95
50832832--50833103	9	30.0	9	69	16	107	36	1	15	46	1.55
50832832--50832935	43	2.4	45	83	10	121	36	0	16	47	1.47
50832870--50832971	51	2.0	53	90	3	163	35	0	19	45	1.51
50832834--50832988	56	2.8	56	80	14	194	36	0	17	45	1.49
50833283--50833316	16	2.1	16	88	0	50	55	8	0	35	1.31
50835765--50835931	48	3.5	48	88	0	244	26	29	19	24	1.99
50847981--50848071	14	6.6	14	71	7	69	45	32	3	18	1.66
50848338--50848671	155	2.2	155	80	8	367	31	22	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50854503--50854608	48	2.2	48	93	0	176	33	5	27	33	1.80
50854742--50854813	37	1.9	37	94	0	126	22	20	34	22	1.97
50857809--50857862	27	2.0	27	85	0	72	38	9	12	38	1.76
50858116--50858348	49	4.7	48	81	6	268	24	17	26	31	1.97
50858213--50858296	28	3.2	28	64	25	74	23	15	29	30	1.95
50858116--50858354	99	2.4	99	84	3	302	25	16	26	31	1.97
50861060--50861232	46	3.7	46	77	6	188	21	20	30	27	1.98
50869688--50869741	27	2.0	27	85	0	72	38	9	12	38	1.76
50870026--50870240	50	4.3	50	91	0	324	24	17	28	29	1.97
50869989--50870240	100	2.5	99	86	5	324	24	18	28	28	1.98
50875568--50875600	12	2.6	13	85	9	50	9	45	0	45	1.35
50876668--50876732	28	2.3	28	91	0	103	32	27	9	30	1.88
50876838--50876927	28	3.2	27	82	7	110	20	23	23	33	1.97
50876848--50876938	27	3.2	28	82	4	94	21	25	19	32	1.97
50876838--50876952	55	2.1	56	82	8	137	19	23	21	35	1.96
50877391--50877429	19	2.1	19	85	0	51	15	7	5	71	1.26
50880746--50880946	99	2.0	99	84	1	258	28	26	18	26	1.98
50880933--50881090	67	2.4	64	78	12	167	27	28	15	29	1.96
50881750--50881810	30	2.0	30	84	6	79	29	22	6	40	1.79
50884760--50885121	46	7.7	48	76	13	283	23	29	19	27	1.98
50884762--50885124	94	3.9	92	80	11	307	23	28	19	27	1.99
50892424--50892532	26	4.2	26	93	0	191	35	23	7	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50899450--50899505	26	2.2	26	96	0	103	37	25	7	30	1.82
50901650--50901716	34	2.0	34	93	0	116	49	4	23	22	1.68
50904924--50904996	30	2.5	30	86	2	103	46	10	19	23	1.81
50912394--50912614	93	2.3	92	81	9	234	25	19	28	25	1.99
50926414--50926471	30	1.9	30	85	0	80	43	8	24	24	1.82
50926675--50926721	19	2.3	20	82	10	60	36	0	14	48	1.44
50927072--50927295	50	4.5	50	78	3	261	25	19	26	28	1.99
50927072--50927295	101	2.2	101	82	3	265	25	19	26	28	1.99
50933537--50933648	27	4.2	26	83	7	134	16	23	23	37	1.93
50933537--50933648	54	2.1	54	88	3	163	16	23	23	37	1.93
50934704--50934737	10	3.3	10	84	8	50	29	8	8	52	1.62
50936020--50936045	6	4.3	6	100	0	52	46	0	38	15	1.46
50938710--50938930	46	4.8	46	83	8	279	28	28	21	21	1.99
50944251--50944362	27	4.2	26	83	7	134	16	23	23	37	1.93
50944251--50944362	54	2.1	54	88	3	163	16	23	23	37	1.93
50947027--50947062	17	2.1	17	100	0	72	55	5	22	16	1.62
50948158--50948315	33	4.8	33	86	0	208	38	10	18	32	1.85
50948158--50948315	66	2.4	66	90	0	235	38	10	18	32	1.85
50958763--50958858	50	1.9	50	85	2	131	34	23	11	30	1.90
50959913--50960082	40	4.3	39	86	5	198	25	21	27	25	1.99
50961897--50961940	15	2.9	15	86	3	52	20	11	15	52	1.74
50964289--50964348	30	2.0	30	83	0	75	40	6	26	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50964569--50964615	19	2.3	20	82	10	60	36	0	14	48	1.44
50964964--50965359	50	7.9	50	77	3	391	27	18	24	30	1.98
50964963--50965355	151	2.6	151	92	0	642	26	18	24	30	1.98
50964963--50965359	101	4.0	100	78	3	330	27	18	24	30	1.98
50965558--50965589	16	2.0	16	93	0	55	46	0	18	34	1.49
50970491--50970596	52	2.0	52	100	0	212	26	18	16	37	1.93
50977297--50977391	42	2.3	42	92	0	154	12	45	18	23	1.84
50990285--50990342	28	2.1	28	96	0	107	34	25	8	31	1.86
50990555--50990771	47	4.6	47	79	8	185	24	30	17	27	1.97
50990550--50990771	93	2.4	92	77	10	227	24	30	18	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290