genome.fa.s7.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  100348136

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  282  of  290  ( 34714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97379664--97379784	58	2.1	59	90	1	190	24	18	23	33	1.97
97379821--97379872	24	2.2	24	85	0	68	17	25	42	15	1.88
97390459--97390716	80	3.2	80	83	5	249	25	22	26	25	2.00
97390459--97390683	40	5.7	40	87	4	285	24	22	26	26	2.00
97394533--97395530	43	23.1	42	78	7	397	18	33	32	15	1.93
97394596--97395482	85	10.3	83	79	10	543	18	32	33	15	1.92
97394589--97395482	128	6.9	128	81	6	939	18	32	32	15	1.92
97395213--97395321	55	2.0	56	90	5	177	18	36	33	11	1.87
97394957--97395550	312	1.9	312	87	3	874	17	32	34	15	1.92
97396236--97396356	58	2.1	59	92	1	199	23	18	24	33	1.97
97400664--97400894	40	5.8	40	84	5	263	26	22	26	24	2.00
97400703--97400921	79	2.8	80	82	8	227	27	21	26	24	1.99
97404045--97404436	195	2.0	195	96	0	730	33	28	21	15	1.94
97405497--97405890	163	2.5	162	94	2	683	34	20	25	20	1.96
97412970--97413742	85	9.1	84	79	8	514	18	32	32	16	1.94
97413005--97413780	128	6.1	127	80	6	723	18	31	32	17	1.94
97413005--97413780	43	18.2	43	83	4	808	18	31	32	17	1.94
97415330--97415421	48	1.9	48	97	0	175	41	18	25	15	1.89
97418431--97418458	13	2.2	13	100	0	56	25	39	28	7	1.82
97418725--97418845	58	2.1	59	92	1	199	23	18	24	33	1.97
97420435--97420747	43	7.3	43	89	2	418	17	31	33	17	1.93
97426080--97426108	14	2.0	15	93	6	51	13	41	31	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97431439--97431531	43	2.2	43	84	0	114	19	40	26	12	1.88
97431516--97432632	43	26.3	43	81	4	1253	18	32	32	16	1.94
97431516--97432632	85	13.1	86	85	2	1253	18	32	32	16	1.94
97431516--97432632	552	2.0	554	94	0	1961	18	32	32	16	1.94
97431475--97432698	127	9.6	128	79	5	790	18	32	31	17	1.94
97432922--97432977	24	2.3	24	75	6	60	28	33	28	8	1.87
97433386--97433506	58	2.1	59	88	1	181	23	18	24	33	1.97
97437727--97438020	48	6.0	48	91	3	471	35	5	27	31	1.80
97437727--97438011	98	2.9	98	97	0	525	35	5	27	32	1.80
97438161--97438261	37	2.7	37	92	0	166	25	20	28	24	1.99
97448975--97449017	21	2.0	21	100	0	86	37	13	25	23	1.92
97453548--97453590	21	2.0	21	100	0	86	37	13	25	23	1.92
97458567--97458601	13	2.7	13	86	0	52	22	42	25	8	1.82
97465458--97465635	85	2.1	86	84	3	225	19	38	26	16	1.92
97465458--97465643	43	4.3	43	77	8	173	19	37	26	15	1.92
97465517--97466307	43	18.7	43	77	11	617	18	33	32	15	1.92
97465792--97466355	85	6.5	85	78	9	521	18	33	33	15	1.92
97465588--97465970	197	1.9	197	86	3	538	19	33	31	14	1.92
97466001--97466108	55	1.9	56	92	1	182	17	33	37	11	1.85
97465958--97466237	98	3.0	97	85	7	350	17	32	35	13	1.90
97465832--97466277	226	2.0	224	85	6	616	17	32	34	15	1.91
97466565--97466611	24	2.0	24	82	0	58	25	40	29	4	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97472047--97472166	58	2.1	59	88	1	179	25	17	23	34	1.96
97474780--97475062	141	2.0	141	100	0	566	18	31	24	26	1.98
97478035--97478210	46	3.8	46	79	4	210	22	20	28	28	1.98
97478032--97478202	93	1.8	93	93	0	297	22	21	28	28	1.99
97481221--97481334	58	1.9	59	85	1	158	24	17	21	36	1.94
97481853--97481901	23	2.1	23	100	0	98	8	40	32	18	1.80
97487560--97492177	43	109.0	43	78	6	3736	18	32	31	16	1.94
97487560--97492108	128	35.4	128	79	7	3601	18	32	31	16	1.94
97489644--97490340	42	16.5	42	81	4	414	19	33	30	16	1.94
97487583--97492179	85	54.2	86	76	7	3589	18	32	31	17	1.94
97490423--97490473	26	2.0	25	88	0	66	17	39	29	11	1.85
97490254--97490643	196	2.0	194	81	4	446	17	33	32	15	1.92
97490926--97491294	202	1.8	202	88	0	567	16	31	33	17	1.93
97492662--97492728	35	1.9	35	90	0	107	26	23	10	38	1.87
97505814--97505846	17	1.9	17	100	0	66	24	30	24	21	1.99
97506185--97507838	43	38.9	43	79	4	1521	19	31	31	18	1.95
97506187--97507838	213	7.8	213	79	6	1483	19	31	31	18	1.95
97506185--97508066	255	7.4	256	76	5	1403	19	31	30	18	1.96
97506187--97507781	128	12.5	129	78	7	925	18	31	31	18	1.95
97506224--97507781	682	2.3	678	82	5	1869	18	31	31	18	1.95
97507638--97507838	84	2.4	85	78	4	201	21	31	29	17	1.96
97507857--97508020	42	3.9	41	74	8	150	22	30	28	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97506148--97508033	43	44.4	42	74	10	358	19	31	30	18	1.96
97508275--97508418	43	3.4	42	81	1	135	20	31	29	18	1.96
97508596--97508648	19	3.0	17	76	10	61	33	9	20	35	1.85
97508620--97508674	22	2.5	23	82	5	60	32	5	20	41	1.75
97510796--97510894	49	2.0	49	90	0	153	29	23	27	20	1.99
97513753--97513803	19	2.9	17	83	11	66	37	9	17	35	1.83
97513775--97513832	22	2.7	21	84	7	71	34	5	18	41	1.73
97514200--97514356	42	3.7	42	83	4	199	15	31	35	17	1.91
97515364--97515534	93	1.8	93	89	0	270	28	28	20	22	1.99
97515356--97515531	46	3.8	46	76	12	180	28	28	19	22	1.98
97515984--97516023	16	2.5	16	100	0	80	27	20	7	45	1.78
97522958--97523128	93	1.8	93	89	0	270	28	27	20	23	1.99
97524420--97525235	43	19.2	43	75	6	545	18	30	31	19	1.96
97524423--97525235	85	9.6	84	76	6	603	18	30	31	19	1.96
97524478--97525335	170	5.0	167	77	8	709	18	30	31	20	1.96
97524466--97525272	213	3.8	212	78	7	697	18	30	30	20	1.96
97525221--97525314	43	2.2	42	84	5	118	15	26	35	22	1.94
97524511--97525315	128	6.3	127	72	11	332	17	30	31	20	1.96
97536198--97536228	5	6.2	5	92	0	53	16	38	22	22	1.92
97536902--97537022	58	2.1	59	90	1	190	33	23	19	23	1.97
97540859--97540935	32	2.4	32	80	0	91	24	24	6	44	1.77
97555233--97555366	69	1.9	69	96	0	250	35	11	9	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97557603--97557640	12	3.2	12	96	0	67	7	50	23	18	1.73
97559628--97559856	114	2.0	114	96	0	422	47	10	14	28	1.76
97566881--97566941	26	2.3	26	85	0	77	40	13	16	29	1.86
97570978--97571087	42	2.6	43	79	4	116	23	20	28	27	1.99
97570939--97571095	43	3.7	43	73	10	142	24	19	28	28	1.99
97573526--97573601	40	1.9	40	88	0	116	39	34	11	14	1.83
97574020--97574065	25	1.9	24	82	8	58	8	26	15	50	1.73
97574079--97574105	8	3.4	8	100	0	54	0	40	0	59	0.98
97575519--97575614	16	5.9	16	73	4	84	22	7	34	35	1.82
97575482--97575611	33	3.9	33	79	9	115	23	7	32	36	1.84
97576374--97576456	19	4.3	19	68	17	55	60	3	0	36	1.14
97578076--97578130	20	2.8	20	88	0	83	25	29	16	29	1.97
97578463--97578611	45	3.3	45	90	0	235	41	14	18	24	1.89
97579512--97579567	20	2.8	20	97	0	103	32	17	28	21	1.96
97579714--97579874	45	3.6	45	99	0	313	26	21	16	35	1.95
97579943--97580028	45	1.9	45	97	0	163	24	20	16	38	1.93
97581453--97581535	43	1.9	44	85	2	114	27	7	19	45	1.76
97581755--97581793	20	2.0	20	94	0	69	48	0	2	48	1.15
97581891--97581931	21	2.0	21	95	4	75	43	14	9	31	1.78
97581914--97581952	14	2.7	15	84	8	53	35	17	7	38	1.79
97590705--97590747	22	2.0	22	95	0	77	6	0	6	86	0.72
97592099--97592161	30	2.1	30	93	0	108	26	4	9	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97596169--97596276	44	2.4	44	87	3	144	29	23	13	33	1.93
97596616--97596673	30	1.9	30	85	0	80	31	22	5	41	1.76
97597286--97597358	5	14.6	5	76	20	64	54	4	1	39	1.28
97597287--97597329	19	2.3	19	92	8	70	55	0	2	41	1.12
97597293--97597357	24	2.7	24	80	9	69	56	4	1	36	1.29
97601920--97601992	5	14.6	5	76	20	64	54	4	1	39	1.28
97601921--97601963	19	2.3	19	92	8	70	55	0	2	41	1.12
97601927--97601991	24	2.7	24	80	9	69	56	4	1	36	1.29
97604580--97604631	3	17.3	3	79	0	50	57	1	9	30	1.42
97608229--97608654	105	4.1	105	100	0	852	43	8	7	40	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290